version 1.137, 2010/04/29 18:11:38
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version 1.142, 2014/01/26 03:57:36
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.142 2014/01/26 03:57:36 brouard |
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Summary: gnuplot changed plot w l 1 has to be changed to plot w l lt 2 |
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... |
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Revision 1.141 2014/01/26 02:42:01 brouard |
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... |
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Revision 1.140 2011/09/02 10:37:54 brouard |
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Summary: times.h is ok with mingw32 now. |
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Revision 1.139 2010/06/14 07:50:17 brouard |
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After the theft of my laptop, I probably lost some lines of codes which were not uploaded to the CVS tree. |
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I remember having already fixed agemin agemax which are pointers now but not cvs saved. |
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Revision 1.138 2010/04/30 18:19:40 brouard |
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*** empty log message *** |
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Revision 1.137 2010/04/29 18:11:38 brouard |
Revision 1.137 2010/04/29 18:11:38 brouard |
(Module): Checking covariates for more complex models |
(Module): Checking covariates for more complex models |
than V1+V2. A lot of change to be done. Unstable. |
than V1+V2. A lot of change to be done. Unstable. |
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Line 399
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#include <errno.h> |
#include <errno.h> |
extern int errno; |
extern int errno; |
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/* #include <sys/time.h> */ |
#ifdef LINUX |
#include <time.h> |
#include <time.h> |
#include "timeval.h" |
#include "timeval.h" |
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#else |
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#include <sys/time.h> |
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#endif |
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#ifdef GSL |
#ifdef GSL |
#include <gsl/gsl_errno.h> |
#include <gsl/gsl_errno.h> |
Line 393 extern int errno;
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Line 414 extern int errno;
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/* #include <libintl.h> */ |
/* #include <libintl.h> */ |
/* #define _(String) gettext (String) */ |
/* #define _(String) gettext (String) */ |
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#define MAXLINE 256 |
#define MAXLINE 1024 /* Was 256. Overflow with 312 with 2 states and 4 covariates. Should be ok */ |
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#define GNUPLOTPROGRAM "gnuplot" |
#define GNUPLOTPROGRAM "gnuplot" |
/*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/ |
/*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/ |
Line 427 extern int errno;
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Line 448 extern int errno;
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98m, April 2010, INED-EUROREVES-Institut de longevite "; |
char version[]="Imach version 0.98nR, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 551 double dateintmean=0;
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Line 572 double dateintmean=0;
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double *weight; |
double *weight; |
int **s; /* Status */ |
int **s; /* Status */ |
double *agedc, **covar, idx; |
double *agedc; |
int **nbcode, *Tvar, **codtab, **Tvard, *Tprod, cptcovprod, *Tvaraff; |
double **covar; /**< covar[i,j], value of jth covariate for individual i, |
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* covar=matrix(0,NCOVMAX,1,n); |
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* cov[Tage[kk]+2]=covar[Tvar[Tage[kk]]][i]*cov[2]; */ |
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double idx; |
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int **nbcode, *Tvar; /**< model=V2 => Tvar[1]= 2 */ |
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int **codtab; /**< codtab=imatrix(1,100,1,10); */ |
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int **Tvard, *Tprod, cptcovprod, *Tvaraff; |
double *lsurv, *lpop, *tpop; |
double *lsurv, *lpop, *tpop; |
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double ftol=FTOL; /* Tolerance for computing Max Likelihood */ |
double ftol=FTOL; /* Tolerance for computing Max Likelihood */ |
Line 1083 char *asc_diff_time(long time_sec, char
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Line 1110 char *asc_diff_time(long time_sec, char
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sec_left = (sec_left) %(60*60); |
sec_left = (sec_left) %(60*60); |
minutes = (sec_left) /60; |
minutes = (sec_left) /60; |
sec_left = (sec_left) % (60); |
sec_left = (sec_left) % (60); |
sprintf(ascdiff,"%d day(s) %d hour(s) %d minute(s) %d second(s)",days, hours, minutes, sec_left); |
sprintf(ascdiff,"%ld day(s) %ld hour(s) %ld minute(s) %ld second(s)",days, hours, minutes, sec_left); |
return ascdiff; |
return ascdiff; |
} |
} |
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Line 1260 double **prevalim(double **prlim, int nl
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Line 1287 double **prevalim(double **prlim, int nl
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for(agefin=age-stepm/YEARM; agefin>=age-delaymax; agefin=agefin-stepm/YEARM){ |
for(agefin=age-stepm/YEARM; agefin>=age-delaymax; agefin=agefin-stepm/YEARM){ |
newm=savm; |
newm=savm; |
/* Covariates have to be included here again */ |
/* Covariates have to be included here again */ |
cov[2]=agefin; |
cov[2]=agefin; |
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for (k=1; k<=cptcovn;k++) { |
for (k=1; k<=cptcovn;k++) { |
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
/* printf("ij=%d k=%d Tvar[k]=%d nbcode=%d cov=%lf codtab[ij][Tvar[k]]=%d \n",ij,k, Tvar[k],nbcode[Tvar[k]][codtab[ij][Tvar[k]]],cov[2+k], codtab[ij][Tvar[k]]);*/ |
/* printf("ij=%d k=%d Tvar[k]=%d nbcode=%d cov=%lf codtab[ij][Tvar[k]]=%d \n",ij,k, Tvar[k],nbcode[Tvar[k]][codtab[ij][Tvar[k]]],cov[2+k], codtab[ij][Tvar[k]]);*/ |
} |
} |
for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; |
for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; |
for (k=1; k<=cptcovprod;k++) |
for (k=1; k<=cptcovprod;k++) |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]] * nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]] * nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
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/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
/*printf("ij=%d cov[3]=%lf \n",ij, cov[3]);*/ |
/*printf("ij=%d cov[3]=%lf \n",ij, cov[3]);*/ |
out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); |
out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); /* Bug Valgrind */ |
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savm=oldm; |
savm=oldm; |
oldm=newm; |
oldm=newm; |
maxmax=0.; |
maxmax=0.; |
Line 1301 double **prevalim(double **prlim, int nl
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Line 1328 double **prevalim(double **prlim, int nl
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double **pmij(double **ps, double *cov, int ncovmodel, double *x, int nlstate ) |
double **pmij(double **ps, double *cov, int ncovmodel, double *x, int nlstate ) |
{ |
{ |
double s1, s2; |
/* According to parameters values stored in x and the covariate's values stored in cov, |
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computes the probability to be observed in state j being in state i by appying the |
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model to the ncovmodel covariates (including constant and age). |
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lnpijopii=ln(pij/pii)= aij+bij*age+cij*v1+dij*v2+... = sum_nc=1^ncovmodel xij(nc)*cov[nc] |
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and, according on how parameters are entered, the position of the coefficient xij(nc) of the |
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ncth covariate in the global vector x is given by the formula: |
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j<i nc+((i-1)*(nlstate+ndeath-1)+j-1)*ncovmodel |
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j>=i nc + ((i-1)*(nlstate+ndeath-1)+(j-2))*ncovmodel |
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Computes ln(pij/pii) (lnpijopii), deduces pij/pii by exponentiation, |
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sums on j different of i to get 1-pii/pii, deduces pii, and then all pij. |
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Outputs ps[i][j] the probability to be observed in j being in j according to |
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the values of the covariates cov[nc] and corresponding parameter values x[nc+shiftij] |
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*/ |
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double s1, lnpijopii; |
/*double t34;*/ |
/*double t34;*/ |
int i,j,j1, nc, ii, jj; |
int i,j,j1, nc, ii, jj; |
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for(i=1; i<= nlstate; i++){ |
for(i=1; i<= nlstate; i++){ |
for(j=1; j<i;j++){ |
for(j=1; j<i;j++){ |
for (nc=1, s2=0.;nc <=ncovmodel; nc++){ |
for (nc=1, lnpijopii=0.;nc <=ncovmodel; nc++){ |
/*s2 += param[i][j][nc]*cov[nc];*/ |
/*lnpijopii += param[i][j][nc]*cov[nc];*/ |
s2 += x[(i-1)*nlstate*ncovmodel+(j-1)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc]; |
lnpijopii += x[nc+((i-1)*(nlstate+ndeath-1)+j-1)*ncovmodel]*cov[nc]; |
/* printf("Int j<i s1=%.17e, s2=%.17e\n",s1,s2); */ |
/* printf("Int j<i s1=%.17e, lnpijopii=%.17e\n",s1,lnpijopii); */ |
} |
} |
ps[i][j]=s2; |
ps[i][j]=lnpijopii; /* In fact ln(pij/pii) */ |
/* printf("s1=%.17e, s2=%.17e\n",s1,s2); */ |
/* printf("s1=%.17e, lnpijopii=%.17e\n",s1,lnpijopii); */ |
} |
} |
for(j=i+1; j<=nlstate+ndeath;j++){ |
for(j=i+1; j<=nlstate+ndeath;j++){ |
for (nc=1, s2=0.;nc <=ncovmodel; nc++){ |
for (nc=1, lnpijopii=0.;nc <=ncovmodel; nc++){ |
s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc]; |
/*lnpijopii += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc];*/ |
/* printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2); */ |
lnpijopii += x[nc + ((i-1)*(nlstate+ndeath-1)+(j-2))*ncovmodel]*cov[nc]; |
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/* printf("Int j>i s1=%.17e, lnpijopii=%.17e %lx %lx\n",s1,lnpijopii,s1,lnpijopii); */ |
} |
} |
ps[i][j]=s2; |
ps[i][j]=lnpijopii; /* In fact ln(pij/pii) */ |
} |
} |
} |
} |
/*ps[3][2]=1;*/ |
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for(i=1; i<= nlstate; i++){ |
for(i=1; i<= nlstate; i++){ |
s1=0; |
s1=0; |
for(j=1; j<i; j++){ |
for(j=1; j<i; j++){ |
s1+=exp(ps[i][j]); |
s1+=exp(ps[i][j]); /* In fact sums pij/pii */ |
/*printf("debug1 %d %d ps=%lf exp(ps)=%lf s1+=%lf\n",i,j,ps[i][j],exp(ps[i][j]),s1); */ |
/*printf("debug1 %d %d ps=%lf exp(ps)=%lf s1+=%lf\n",i,j,ps[i][j],exp(ps[i][j]),s1); */ |
} |
} |
for(j=i+1; j<=nlstate+ndeath; j++){ |
for(j=i+1; j<=nlstate+ndeath; j++){ |
s1+=exp(ps[i][j]); |
s1+=exp(ps[i][j]); /* In fact sums pij/pii */ |
/*printf("debug2 %d %d ps=%lf exp(ps)=%lf s1+=%lf\n",i,j,ps[i][j],exp(ps[i][j]),s1); */ |
/*printf("debug2 %d %d ps=%lf exp(ps)=%lf s1+=%lf\n",i,j,ps[i][j],exp(ps[i][j]),s1); */ |
} |
} |
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/* s1= sum_{j<>i} pij/pii=(1-pii)/pii and thus pii is known from s1 */ |
ps[i][i]=1./(s1+1.); |
ps[i][i]=1./(s1+1.); |
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/* Computing other pijs */ |
for(j=1; j<i; j++) |
for(j=1; j<i; j++) |
ps[i][j]= exp(ps[i][j])*ps[i][i]; |
ps[i][j]= exp(ps[i][j])*ps[i][i]; |
for(j=i+1; j<=nlstate+ndeath; j++) |
for(j=i+1; j<=nlstate+ndeath; j++) |
Line 1466 double func( double *x)
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Line 1508 double func( double *x)
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if(mle==1){ |
if(mle==1){ |
for (i=1,ipmx=0, sw=0.; i<=imx; i++){ |
for (i=1,ipmx=0, sw=0.; i<=imx; i++){ |
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/* Computes the values of the ncovmodel covariates of the model |
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depending if the covariates are fixed or variying (age dependent) and stores them in cov[] |
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Then computes with function pmij which return a matrix p[i][j] giving the elementary probability |
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to be observed in j being in i according to the model. |
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*/ |
for (k=1; k<=cptcovn;k++) cov[2+k]=covar[Tvar[k]][i]; |
for (k=1; k<=cptcovn;k++) cov[2+k]=covar[Tvar[k]][i]; |
/* In model V2+V1*V4+age*V3+V3*V2 Tvar[1] is V2, Tvar[2=V1*V4] |
/* In model V2+V1*V4+age*V3+V3*V2 Tvar[1] is V2, Tvar[2=V1*V4] |
is 6, Tvar[3=age*V3] should not been computed because of age Tvar[4=V3*V2] |
is 6, Tvar[3=age*V3] should not be computed because of age Tvar[4=V3*V2] |
has been calculated etc */ |
has been calculated etc */ |
for(mi=1; mi<= wav[i]-1; mi++){ |
for(mi=1; mi<= wav[i]-1; mi++){ |
for (ii=1;ii<=nlstate+ndeath;ii++) |
for (ii=1;ii<=nlstate+ndeath;ii++) |
Line 1769 double funcone( double *x)
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Line 1816 double funcone( double *x)
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ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
/*printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
/*printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
if(globpr){ |
if(globpr){ |
fprintf(ficresilk,"%9d %6d %2d %2d %1d %1d %3d %11.6f %8.4f\ |
fprintf(ficresilk,"%9ld %6d %2d %2d %1d %1d %3d %11.6f %8.4f\ |
%11.6f %11.6f %11.6f ", \ |
%11.6f %11.6f %11.6f ", \ |
num[i],i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i], |
num[i],i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i], |
2*weight[i]*lli,out[s1][s2],savm[s1][s2]); |
2*weight[i]*lli,out[s1][s2],savm[s1][s2]); |
Line 2511 void concatwav(int wav[], int **dh, int
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Line 2558 void concatwav(int wav[], int **dh, int
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} |
} |
jmean=sum/k; |
jmean=sum/k; |
printf("Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, num[ijmin], jmax, num[ijmax], jmean); |
printf("Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, num[ijmin], jmax, num[ijmax], jmean); |
fprintf(ficlog,"Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, ijmin, jmax, ijmax, jmean); |
fprintf(ficlog,"Delay (in months) between two waves Min=%d (for indiviudal %d) Max=%d (%d) Mean=%f\n\n ",jmin, ijmin, jmax, ijmax, jmean); |
} |
} |
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/*********** Tricode ****************************/ |
/*********** Tricode ****************************/ |
Line 3183 void varevsij(char optionfilefiname[], d
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Line 3230 void varevsij(char optionfilefiname[], d
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/* fprintf(ficgp,"\n plot \"%s\" u 1:($3*%6.3f) not w l 1 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n plot \"%s\" u 1:($3*%6.3f) not w l 1 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)*%6.3f) t \"95\%% interval\" w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)*%6.3f) t \"95\%% interval\" w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)*%6.3f) not w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)*%6.3f) not w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
fprintf(ficgp,"\n plot \"%s\" u 1:($3) not w l 1 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n plot \"%s\" u 1:($3) not w l lt 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95\%% interval\" w l 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95\%% interval\" w l lt 3 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)) not w l 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)) not w l lt 3 ",subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> File (multiple files are possible if covariates are present): <A href=\"%s\">%s</a>\n",subdirf(fileresprobmorprev),subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> File (multiple files are possible if covariates are present): <A href=\"%s\">%s</a>\n",subdirf(fileresprobmorprev),subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months. <br> <img src=\"%s%s.png\"> <br>\n", estepm,subdirf3(optionfilefiname,"varmuptjgr",digitp),digit); |
fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months. <br> <img src=\"%s%s.png\"> <br>\n", estepm,subdirf3(optionfilefiname,"varmuptjgr",digitp),digit); |
/* fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months and then divided by estepm and multiplied by %.0f in order to have the probability to die over a year <br> <img src=\"varmuptjgr%s%s.png\"> <br>\n", stepm,YEARM,digitp,digit); |
/* fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months and then divided by estepm and multiplied by %.0f in order to have the probability to die over a year <br> <img src=\"varmuptjgr%s%s.png\"> <br>\n", stepm,YEARM,digitp,digit); |
Line 3780 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 3827 plot [%.f:%.f] \"%s\" every :::%d::%d u
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if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 1,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"95\%% CI\" w l 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"95\%% CI\" w l lt 2,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"\" w l 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l 2",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1)); |
fprintf(ficgp,"\" t\"\" w l lt 2,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l lt 3",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1)); |
} |
} |
} |
} |
/*2 eme*/ |
/*2 eme*/ |
Line 3813 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
Line 3860 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"\" w l 0,"); |
fprintf(ficgp,"\" t\"\" w l lt 1,"); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); |
for (j=1; j<= nlstate+1 ; j ++) { |
for (j=1; j<= nlstate+1 ; j ++) { |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l 0"); |
if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 1"); |
else fprintf(ficgp,"\" t\"\" w l 0,"); |
else fprintf(ficgp,"\" t\"\" w l lt 1,"); |
} |
} |
} |
} |
|
|
Line 3905 plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1
|
Line 3952 plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1
|
fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1); |
fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1); |
else |
else |
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
ij=1; |
ij=1;/* To be checked else nbcode[0][0] wrong */ |
for(j=3; j <=ncovmodel; j++) { |
for(j=3; j <=ncovmodel; j++) { |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { /* Bug valgrind */ |
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
ij++; |
ij++; |
} |
} |
Line 4577 int readdata(char datafile[], int firsto
|
Line 4624 int readdata(char datafile[], int firsto
|
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
Line 4592 int readdata(char datafile[], int firsto
|
Line 4639 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
anint[j][i]= (double) year; |
anint[j][i]= (double) year; |
Line 4608 int readdata(char datafile[], int firsto
|
Line 4655 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
andc[i]=(double) year; |
andc[i]=(double) year; |
Line 4623 int readdata(char datafile[], int firsto
|
Line 4670 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
if (year==9999) { |
if (year==9999) { |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
|
|
} |
} |
Line 4641 int readdata(char datafile[], int firsto
|
Line 4688 int readdata(char datafile[], int firsto
|
errno=0; |
errno=0; |
dval=strtod(strb,&endptr); |
dval=strtod(strb,&endptr); |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%f' at line number %ld, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
printf("Error reading data around '%f' at line number %d, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fprintf(ficlog,"Error reading data around '%f' at line number %ld, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fprintf(ficlog,"Error reading data around '%f' at line number %d, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fflush(ficlog); |
fflush(ficlog); |
return 1; |
return 1; |
} |
} |
Line 4657 int readdata(char datafile[], int firsto
|
Line 4704 int readdata(char datafile[], int firsto
|
errno=0; |
errno=0; |
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%d' at line number %ld for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line); |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line); |
fprintf(ficlog,"Error reading data around '%d' at line number %ld for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
if(lval <-1 || lval >1){ |
if(lval <-1 || lval >1){ |
printf("Error reading data around '%d' at line number %ld for individual %d, '%s'\n \ |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
Line 4672 int readdata(char datafile[], int firsto
|
Line 4719 int readdata(char datafile[], int firsto
|
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
output of IMaCh is often meaningless.\n \ |
output of IMaCh is often meaningless.\n \ |
Exiting.\n",lval,linei, i,line,j); |
Exiting.\n",lval,linei, i,line,j); |
fprintf(ficlog,"Error reading data around '%d' at line number %ld for individual %d, '%s'\n \ |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
Line 4734 int decodemodel ( char model[], int last
|
Line 4781 int decodemodel ( char model[], int last
|
fprintf(ficlog,"Error. AGE must be in lower case model=%s ",model);fflush(ficlog); |
fprintf(ficlog,"Error. AGE must be in lower case model=%s ",model);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
|
if (strstr(model,"v") !=0){ |
|
printf("Error. 'v' must be in upper case 'V' model=%s ",model); |
|
fprintf(ficlog,"Error. 'v' must be in upper case model=%s ",model);fflush(ficlog); |
|
return 1; |
|
} |
|
|
/* This loop fills the array Tvar from the string 'model'.*/ |
/* This loop fills the array Tvar from the string 'model'.*/ |
/* j is the number of + signs in the model V1+V2+V3 j=2 i=3 to 1 */ |
/* j is the number of + signs in the model V1+V2+V3 j=2 i=3 to 1 */ |
Line 4874 calandcheckages(int imx, int maxwav, dou
|
Line 4926 calandcheckages(int imx, int maxwav, dou
|
} |
} |
else if(agev[m][i] >*agemax){ |
else if(agev[m][i] >*agemax){ |
*agemax=agev[m][i]; |
*agemax=agev[m][i]; |
/* printf(" anint[%d][%d]=%.0f annais[%d]=%.0f, agemax=%.0f\n",m,i,anint[m][i], i,annais[i], agemax);*/ |
printf(" Max anint[%d][%d]=%.0f annais[%d]=%.0f, agemax=%.2f\n",m,i,anint[m][i], i,annais[i], *agemax); |
} |
} |
/*agev[m][i]=anint[m][i]-annais[i];*/ |
/*agev[m][i]=anint[m][i]-annais[i];*/ |
/* agev[m][i] = age[i]+2*m;*/ |
/* agev[m][i] = age[i]+2*m;*/ |
Line 4908 calandcheckages(int imx, int maxwav, dou
|
Line 4960 calandcheckages(int imx, int maxwav, dou
|
}*/ |
}*/ |
|
|
|
|
printf("Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, agemin, agemax); |
printf("Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, agemin, agemax); |
fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
|
|
return (0); |
return (0); |
endread: |
endread: |
Line 5130 int main(int argc, char *argv[])
|
Line 5182 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5146 int main(int argc, char *argv[])
|
Line 5198 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line, stdout); |
|
//puts(line); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5199 int main(int argc, char *argv[])
|
Line 5252 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5249 run imach with mle=-1 to get a correct t
|
Line 5302 run imach with mle=-1 to get a correct t
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5290 run imach with mle=-1 to get a correct t
|
Line 5343 run imach with mle=-1 to get a correct t
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5381 run imach with mle=-1 to get a correct t
|
Line 5434 run imach with mle=-1 to get a correct t
|
ncovcol + k1 |
ncovcol + k1 |
If already ncovcol=4 and model=V2+V1+V1*V4+age*V3 |
If already ncovcol=4 and model=V2+V1+V1*V4+age*V3 |
Tvar[3=V1*V4]=4+1 etc */ |
Tvar[3=V1*V4]=4+1 etc */ |
Tprod=ivector(1,15); |
Tprod=ivector(1,15); /* Gives the position of a product */ |
/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 |
/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 |
if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) |
if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) |
*/ |
*/ |
Tvaraff=ivector(1,15); |
Tvaraff=ivector(1,15); |
Tvard=imatrix(1,15,1,2); /* For V3*V2 Tvard[k1=2][1]=3 (V3) Tvard[k1=2][2]=2(V2) */ |
Tvard=imatrix(1,15,1,2); /* n=Tvard[k1][1] and m=Tvard[k1][2] gives the couple n,m of the k1 th product Vn*Vm |
|
* For V3*V2 (in V2+V1+V1*V4+age*V3+V3*V2), V3*V2 position is 2nd. |
|
* Tvard[k1=2][1]=3 (V3) Tvard[k1=2][2]=2(V2) */ |
Tage=ivector(1,15); /* Gives the covariate id of covariates associated with age: V2 + V1 + age*V4 + V3*age |
Tage=ivector(1,15); /* Gives the covariate id of covariates associated with age: V2 + V1 + age*V4 + V3*age |
4 covariates (3 plus signs) |
4 covariates (3 plus signs) |
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
Line 5445 run imach with mle=-1 to get a correct t
|
Line 5500 run imach with mle=-1 to get a correct t
|
for(j=1; j <= ncodemax[k]; j++){ /* For each modality of this covariate */ |
for(j=1; j <= ncodemax[k]; j++){ /* For each modality of this covariate */ |
for(cpt=1; cpt <=(m/pow(2,cptcoveff+1-k)); cpt++){ /* cpt=1 to 8/2**(3+1-1 or 3+1-3) =1 or 4 */ |
for(cpt=1; cpt <=(m/pow(2,cptcoveff+1-k)); cpt++){ /* cpt=1 to 8/2**(3+1-1 or 3+1-3) =1 or 4 */ |
h++; |
h++; |
if (h>m) { |
if (h>m) |
h=1; |
h=1; |
codtab[h][k]=j; |
codtab[h][k]=j; |
codtab[h][Tvar[k]]=j; |
codtab[h][Tvar[k]]=j; |
} |
|
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
} |
} |
} |
} |
Line 5477 run imach with mle=-1 to get a correct t
|
Line 5531 run imach with mle=-1 to get a correct t
|
else{ |
else{ |
fprintf(ficgp,"\n# %s\n", version); |
fprintf(ficgp,"\n# %s\n", version); |
fprintf(ficgp,"# %s\n", optionfilegnuplot); |
fprintf(ficgp,"# %s\n", optionfilegnuplot); |
fprintf(ficgp,"set missing 'NaNq'\n"); |
//fprintf(ficgp,"set missing 'NaNq'\n"); |
|
fprintf(ficgp,"set datafile missing 'NaNq'\n"); |
} |
} |
/* fclose(ficgp);*/ |
/* fclose(ficgp);*/ |
/*--------- index.htm --------*/ |
/*--------- index.htm --------*/ |
Line 5916 Interval (in months) between two waves:
|
Line 5971 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5936 Interval (in months) between two waves:
|
Line 5991 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5950 Interval (in months) between two waves:
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Line 6005 Interval (in months) between two waves:
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while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5966 Interval (in months) between two waves:
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Line 6021 Interval (in months) between two waves:
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while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 6343 Interval (in months) between two waves:
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Line 6398 Interval (in months) between two waves:
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/*---------- End : free ----------------*/ |
/*---------- End : free ----------------*/ |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
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} /* mle==-3 arrives here for freeing */ |
} /* mle==-3 arrives here for freeing */ |
endfree: |
endfree: |
free_matrix(prlim,1,nlstate,1,nlstate); |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
Line 6387 Interval (in months) between two waves:
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Line 6441 Interval (in months) between two waves:
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fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
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printf("Total time was %d Sec.\n", end_time.tv_sec -start_time.tv_sec); |
printf("Total time was %ld Sec.\n", end_time.tv_sec -start_time.tv_sec); |
fprintf(ficlog,"Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
fprintf(ficlog,"Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
fprintf(ficlog,"Total time was %d Sec.\n", end_time.tv_sec -start_time.tv_sec); |
fprintf(ficlog,"Total time was %ld Sec.\n", end_time.tv_sec -start_time.tv_sec); |
/* printf("Total time was %d uSec.\n", total_usecs);*/ |
/* printf("Total time was %d uSec.\n", total_usecs);*/ |
/* if(fileappend(fichtm,optionfilehtm)){ */ |
/* if(fileappend(fichtm,optionfilehtm)){ */ |
fprintf(fichtm,"<br>Local time at start %s<br>Local time at end %s<br>\n</body></html>",strstart, strtend); |
fprintf(fichtm,"<br>Local time at start %s<br>Local time at end %s<br>\n</body></html>",strstart, strtend); |