version 1.138, 2010/04/30 18:19:40
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version 1.144, 2014/02/10 22:17:31
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.144 2014/02/10 22:17:31 brouard |
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*** empty log message *** |
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Revision 1.143 2014/01/26 09:45:38 brouard |
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Summary: Version 0.98nR (to be improved, but gives same optimization results as 0.98k. Nice, promising |
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... |
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(Module): Version 0.98nR Running ok, but output format still only works for three covariates. |
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Revision 1.142 2014/01/26 03:57:36 brouard |
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Summary: gnuplot changed plot w l 1 has to be changed to plot w l lt 2 |
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... |
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Revision 1.141 2014/01/26 02:42:01 brouard |
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* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested... |
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Revision 1.140 2011/09/02 10:37:54 brouard |
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Summary: times.h is ok with mingw32 now. |
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Revision 1.139 2010/06/14 07:50:17 brouard |
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After the theft of my laptop, I probably lost some lines of codes which were not uploaded to the CVS tree. |
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I remember having already fixed agemin agemax which are pointers now but not cvs saved. |
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Revision 1.138 2010/04/30 18:19:40 brouard |
Revision 1.138 2010/04/30 18:19:40 brouard |
*** empty log message *** |
*** empty log message *** |
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#include <errno.h> |
#include <errno.h> |
extern int errno; |
extern int errno; |
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/* #include <sys/time.h> */ |
#ifdef LINUX |
#include <time.h> |
#include <time.h> |
#include "timeval.h" |
#include "timeval.h" |
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#else |
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#include <sys/time.h> |
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#endif |
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#ifdef GSL |
#ifdef GSL |
#include <gsl/gsl_errno.h> |
#include <gsl/gsl_errno.h> |
Line 396 extern int errno;
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Line 423 extern int errno;
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/* #include <libintl.h> */ |
/* #include <libintl.h> */ |
/* #define _(String) gettext (String) */ |
/* #define _(String) gettext (String) */ |
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#define MAXLINE 256 |
#define MAXLINE 1024 /* Was 256. Overflow with 312 with 2 states and 4 covariates. Should be ok */ |
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#define GNUPLOTPROGRAM "gnuplot" |
#define GNUPLOTPROGRAM "gnuplot" |
/*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/ |
/*#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"*/ |
Line 405 extern int errno;
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Line 432 extern int errno;
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#define GLOCK_ERROR_NOPATH -1 /* empty path */ |
#define GLOCK_ERROR_NOPATH -1 /* empty path */ |
#define GLOCK_ERROR_GETCWD -2 /* cannot get cwd */ |
#define GLOCK_ERROR_GETCWD -2 /* cannot get cwd */ |
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#define MAXPARM 128 /* Maximum number of parameters for the optimization */ |
#define MAXPARM 128 /**< Maximum number of parameters for the optimization */ |
#define NPARMAX 64 /* (nlstate+ndeath-1)*nlstate*ncovmodel */ |
#define NPARMAX 64 /**< (nlstate+ndeath-1)*nlstate*ncovmodel */ |
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#define NINTERVMAX 8 |
#define NINTERVMAX 8 |
#define NLSTATEMAX 8 /* Maximum number of live states (for func) */ |
#define NLSTATEMAX 8 /**< Maximum number of live states (for func) */ |
#define NDEATHMAX 8 /* Maximum number of dead states (for func) */ |
#define NDEATHMAX 8 /**< Maximum number of dead states (for func) */ |
#define NCOVMAX 20 /* Maximum number of covariates */ |
#define NCOVMAX 20 /**< Maximum number of covariates, including generated covariates V1*V2 */ |
#define MAXN 20000 |
#define MAXN 20000 |
#define YEARM 12. /* Number of months per year */ |
#define YEARM 12. /**< Number of months per year */ |
#define AGESUP 130 |
#define AGESUP 130 |
#define AGEBASE 40 |
#define AGEBASE 40 |
#define AGEGOMP 10. /* Minimal age for Gompertz adjustment */ |
#define AGEGOMP 10. /**< Minimal age for Gompertz adjustment */ |
#ifdef UNIX |
#ifdef UNIX |
#define DIRSEPARATOR '/' |
#define DIRSEPARATOR '/' |
#define CHARSEPARATOR "/" |
#define CHARSEPARATOR "/" |
Line 430 extern int errno;
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Line 457 extern int errno;
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98m, April 2010, INED-EUROREVES-Institut de longevite "; |
char version[]="Imach version 0.98nR2, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 554 double dateintmean=0;
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Line 581 double dateintmean=0;
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double *weight; |
double *weight; |
int **s; /* Status */ |
int **s; /* Status */ |
double *agedc, **covar, idx; |
double *agedc; |
int **nbcode, *Tvar, **codtab, **Tvard, *Tprod, cptcovprod, *Tvaraff; |
double **covar; /**< covar[i,j], value of jth covariate for individual i, |
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* covar=matrix(0,NCOVMAX,1,n); |
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* cov[Tage[kk]+2]=covar[Tvar[Tage[kk]]][i]*cov[2]; */ |
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double idx; |
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int **nbcode, *Tvar; /**< model=V2 => Tvar[1]= 2 */ |
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int **codtab; /**< codtab=imatrix(1,100,1,10); */ |
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int **Tvard, *Tprod, cptcovprod, *Tvaraff; |
double *lsurv, *lpop, *tpop; |
double *lsurv, *lpop, *tpop; |
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double ftol=FTOL; /* Tolerance for computing Max Likelihood */ |
double ftol=FTOL; /**< Tolerance for computing Max Likelihood */ |
double ftolhess; /* Tolerance for computing hessian */ |
double ftolhess; /**< Tolerance for computing hessian */ |
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/**************** split *************************/ |
/**************** split *************************/ |
static int split( char *path, char *dirc, char *name, char *ext, char *finame ) |
static int split( char *path, char *dirc, char *name, char *ext, char *finame ) |
Line 1086 char *asc_diff_time(long time_sec, char
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Line 1119 char *asc_diff_time(long time_sec, char
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sec_left = (sec_left) %(60*60); |
sec_left = (sec_left) %(60*60); |
minutes = (sec_left) /60; |
minutes = (sec_left) /60; |
sec_left = (sec_left) % (60); |
sec_left = (sec_left) % (60); |
sprintf(ascdiff,"%d day(s) %d hour(s) %d minute(s) %d second(s)",days, hours, minutes, sec_left); |
sprintf(ascdiff,"%ld day(s) %ld hour(s) %ld minute(s) %ld second(s)",days, hours, minutes, sec_left); |
return ascdiff; |
return ascdiff; |
} |
} |
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Line 1276 double **prevalim(double **prlim, int nl
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Line 1309 double **prevalim(double **prlim, int nl
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/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
/*printf("ij=%d cov[3]=%lf \n",ij, cov[3]);*/ |
/*printf("ij=%d cov[3]=%lf \n",ij, cov[3]);*/ |
out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); |
out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm); /* Bug Valgrind */ |
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savm=oldm; |
savm=oldm; |
oldm=newm; |
oldm=newm; |
Line 1792 double funcone( double *x)
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Line 1825 double funcone( double *x)
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ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
/*printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
/*printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
if(globpr){ |
if(globpr){ |
fprintf(ficresilk,"%9d %6d %2d %2d %1d %1d %3d %11.6f %8.4f\ |
fprintf(ficresilk,"%9ld %6d %2d %2d %1d %1d %3d %11.6f %8.4f\ |
%11.6f %11.6f %11.6f ", \ |
%11.6f %11.6f %11.6f ", \ |
num[i],i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i], |
num[i],i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i], |
2*weight[i]*lli,out[s1][s2],savm[s1][s2]); |
2*weight[i]*lli,out[s1][s2],savm[s1][s2]); |
Line 2179 void freqsummary(char fileres[], int ia
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Line 2212 void freqsummary(char fileres[], int ia
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first=1; |
first=1; |
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for(k1=1; k1<=j;k1++){ |
for(k1=1; k1<=j ; k1++){ /* Loop on covariates */ |
for(i1=1; i1<=ncodemax[k1];i1++){ |
for(i1=1; i1<=ncodemax[k1];i1++){ /* Now it is 2 */ |
j1++; |
j1++; |
/*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); |
/*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]); |
scanf("%d", i);*/ |
scanf("%d", i);*/ |
Line 2188 void freqsummary(char fileres[], int ia
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Line 2221 void freqsummary(char fileres[], int ia
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for (jk=-5; jk<=nlstate+ndeath; jk++) |
for (jk=-5; jk<=nlstate+ndeath; jk++) |
for(m=iagemin; m <= iagemax+3; m++) |
for(m=iagemin; m <= iagemax+3; m++) |
freq[i][jk][m]=0; |
freq[i][jk][m]=0; |
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for (i=1; i<=nlstate; i++) |
for (i=1; i<=nlstate; i++) |
for(m=iagemin; m <= iagemax+3; m++) |
for(m=iagemin; m <= iagemax+3; m++) |
prop[i][m]=0; |
prop[i][m]=0; |
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dateintsum=0; |
dateintsum=0; |
k2cpt=0; |
k2cpt=0; |
for (i=1; i<=imx; i++) { |
for (i=1; i<=imx; i++) { |
bool=1; |
bool=1; |
if (cptcovn>0) { |
if (cptcovn>0) { /* Filter is here: Must be looked at for model=V1+V2+V3+V4 */ |
for (z1=1; z1<=cptcoveff; z1++) |
for (z1=1; z1<=cptcoveff; z1++) |
if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]]) |
if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]]){ |
bool=0; |
bool=0; |
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printf("bool=%d i=%d, z1=%d, i1=%d, Tvaraff[%d]=%d, covar[Tvarff][%d]=%2f, codtab[%d][%d]=%d, nbcode[Tvaraff][codtab[%d][%d]=%d, j1=%d\n", |
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bool,i,z1, i1, z1, Tvaraff[z1],i,covar[Tvaraff[z1]][i],j1,z1,codtab[j1][z1], |
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j1,z1,nbcode[Tvaraff[z1]][codtab[j1][z1]],j1); |
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/* For j1=7 in V1+V2+V3+V4 = 0 1 1 0 and codtab[7][3]=1 and nbcde[3][?]=1*/ |
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} |
} |
} |
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if (bool==1){ |
if (bool==1){ |
for(m=firstpass; m<=lastpass; m++){ |
for(m=firstpass; m<=lastpass; m++){ |
k2=anint[m][i]+(mint[m][i]/12.); |
k2=anint[m][i]+(mint[m][i]/12.); |
Line 2229 void freqsummary(char fileres[], int ia
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Line 2268 void freqsummary(char fileres[], int ia
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fprintf(ficresp, "\n#********** Variable "); |
fprintf(ficresp, "\n#********** Variable "); |
for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); |
for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); |
fprintf(ficresp, "**********\n#"); |
fprintf(ficresp, "**********\n#"); |
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fprintf(ficlog, "\n#********** Variable "); |
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for (z1=1; z1<=cptcoveff; z1++) fprintf(ficlog, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]); |
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fprintf(ficlog, "**********\n#"); |
} |
} |
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
fprintf(ficresp, " Age Prev(%d) N(%d) N",i,i); |
fprintf(ficresp, " Age Prev(%d) N(%d) N",i,i); |
Line 2534 void concatwav(int wav[], int **dh, int
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Line 2576 void concatwav(int wav[], int **dh, int
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} |
} |
jmean=sum/k; |
jmean=sum/k; |
printf("Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, num[ijmin], jmax, num[ijmax], jmean); |
printf("Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, num[ijmin], jmax, num[ijmax], jmean); |
fprintf(ficlog,"Delay (in months) between two waves Min=%d (for indiviudal %ld) Max=%d (%ld) Mean=%f\n\n ",jmin, ijmin, jmax, ijmax, jmean); |
fprintf(ficlog,"Delay (in months) between two waves Min=%d (for indiviudal %d) Max=%d (%d) Mean=%f\n\n ",jmin, ijmin, jmax, ijmax, jmean); |
} |
} |
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/*********** Tricode ****************************/ |
/*********** Tricode ****************************/ |
void tricode(int *Tvar, int **nbcode, int imx) |
void tricode(int *Tvar, int **nbcode, int imx) |
{ |
{ |
/* Uses cptcovn+2*cptcovprod as the number of covariates */ |
/**< Uses cptcovn+2*cptcovprod as the number of covariates */ |
/* Tvar[i]=atoi(stre); /* find 'n' in Vn and stores in Tvar. If model=V2+V1 Tvar[1]=2 and Tvar[2]=1 */ |
/* Tvar[i]=atoi(stre); find 'n' in Vn and stores in Tvar. If model=V2+V1 Tvar[1]=2 and Tvar[2]=1 |
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/* Boring subroutine which should only output nbcode[Tvar[j]][k] |
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/* nbcode[Tvar[j][1]= |
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*/ |
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int Ndum[20],ij=1, k=0, j=0, i=0, maxncov=NCOVMAX; |
int Ndum[20],ij=1, k=0, j=0, i=0, maxncov=NCOVMAX; |
int modmaxcovj=0; /* Modality max of covariates j */ |
int modmaxcovj=0; /* Modality max of covariates j */ |
cptcoveff=0; |
cptcoveff=0; |
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for (k=0; k<maxncov; k++) Ndum[k]=0; |
for (k=0; k < maxncov; k++) Ndum[k]=0; |
for (k=1; k<=7; k++) ncodemax[k]=0; /* Horrible constant again */ |
for (k=1; k <= maxncov; k++) ncodemax[k]=0; /* Horrible constant again replaced by NCOVMAX */ |
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for (j=1; j<=(cptcovn+2*cptcovprod); j++) { /* For each covariate j */ |
for (j=1; j<=(cptcovn+2*cptcovprod); j++) { /* For each covariate j */ |
for (i=1; i<=imx; i++) { /*reads the data file to get the maximum value of the |
for (i=1; i<=imx; i++) { /*reads the data file to get the maximum value of the |
Line 2602 void tricode(int *Tvar, int **nbcode, in
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Line 2647 void tricode(int *Tvar, int **nbcode, in
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} |
} |
} |
} |
ij--; |
ij--; |
cptcoveff=ij; /*Number of simple covariates*/ |
cptcoveff=ij; /*Number of total covariates*/ |
} |
} |
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/*********** Health Expectancies ****************/ |
/*********** Health Expectancies ****************/ |
Line 3206 void varevsij(char optionfilefiname[], d
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Line 3251 void varevsij(char optionfilefiname[], d
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/* fprintf(ficgp,"\n plot \"%s\" u 1:($3*%6.3f) not w l 1 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n plot \"%s\" u 1:($3*%6.3f) not w l 1 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)*%6.3f) t \"95\%% interval\" w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)*%6.3f) t \"95\%% interval\" w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)*%6.3f) not w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
/* fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)*%6.3f) not w l 2 ",fileresprobmorprev,YEARM/estepm); */ |
fprintf(ficgp,"\n plot \"%s\" u 1:($3) not w l 1 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n plot \"%s\" u 1:($3) not w l lt 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95\%% interval\" w l 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3+1.96*$4)) t \"95\%% interval\" w l lt 3 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)) not w l 2 ",subdirf(fileresprobmorprev)); |
fprintf(ficgp,"\n replot \"%s\" u 1:(($3-1.96*$4)) not w l lt 3 ",subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> File (multiple files are possible if covariates are present): <A href=\"%s\">%s</a>\n",subdirf(fileresprobmorprev),subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> File (multiple files are possible if covariates are present): <A href=\"%s\">%s</a>\n",subdirf(fileresprobmorprev),subdirf(fileresprobmorprev)); |
fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months. <br> <img src=\"%s%s.png\"> <br>\n", estepm,subdirf3(optionfilefiname,"varmuptjgr",digitp),digit); |
fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months. <br> <img src=\"%s%s.png\"> <br>\n", estepm,subdirf3(optionfilefiname,"varmuptjgr",digitp),digit); |
/* fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months and then divided by estepm and multiplied by %.0f in order to have the probability to die over a year <br> <img src=\"varmuptjgr%s%s.png\"> <br>\n", stepm,YEARM,digitp,digit); |
/* fprintf(fichtm,"\n<br> Probability is computed over estepm=%d months and then divided by estepm and multiplied by %.0f in order to have the probability to die over a year <br> <img src=\"varmuptjgr%s%s.png\"> <br>\n", stepm,YEARM,digitp,digit); |
Line 3803 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 3848 plot [%.f:%.f] \"%s\" every :::%d::%d u
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if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l 0,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"Period (stable) prevalence\" w l lt 1,\"%s\" every :::%d::%d u 1:($2+1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"95\%% CI\" w l 1,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
fprintf(ficgp,"\" t\"95\%% CI\" w l lt 2,\"%s\" every :::%d::%d u 1:($2-1.96*$3) \"\%%lf",subdirf2(fileres,"vpl"),k1-1,k1-1); |
for (i=1; i<= nlstate ; i ++) { |
for (i=1; i<= nlstate ; i ++) { |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
if (i==cpt) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"\" w l 1,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l 2",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1)); |
fprintf(ficgp,"\" t\"\" w l lt 2,\"%s\" every :::%d::%d u 1:($%d) t\"Observed prevalence \" w l lt 3",subdirf2(fileres,"p"),k1-1,k1-1,2+4*(cpt-1)); |
} |
} |
} |
} |
/*2 eme*/ |
/*2 eme*/ |
Line 3836 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
Line 3881 plot [%.f:%.f] \"%s\" every :::%d::%d u
|
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
fprintf(ficgp,"\" t\"\" w l 0,"); |
fprintf(ficgp,"\" t\"\" w l lt 1,"); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); |
fprintf(ficgp,"\"%s\" every :::%d::%d u 1:($2+$3*2) \"\%%lf",subdirf2(fileres,"t"),k1-1,k1-1); |
for (j=1; j<= nlstate+1 ; j ++) { |
for (j=1; j<= nlstate+1 ; j ++) { |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
if (j==i) fprintf(ficgp," \%%lf (\%%lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
else fprintf(ficgp," \%%*lf (\%%*lf)"); |
} |
} |
if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l 0"); |
if (i== (nlstate+1)) fprintf(ficgp,"\" t\"\" w l lt 1"); |
else fprintf(ficgp,"\" t\"\" w l 0,"); |
else fprintf(ficgp,"\" t\"\" w l lt 1,"); |
} |
} |
} |
} |
|
|
Line 3928 plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1
|
Line 3973 plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1
|
fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1); |
fprintf(ficgp," %f*exp(p%d+p%d*x",YEARM/stepm,i,i+1); |
else |
else |
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
ij=1; |
ij=1;/* To be checked else nbcode[0][0] wrong */ |
for(j=3; j <=ncovmodel; j++) { |
for(j=3; j <=ncovmodel; j++) { |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { /* Bug valgrind */ |
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
ij++; |
ij++; |
} |
} |
Line 4600 int readdata(char datafile[], int firsto
|
Line 4645 int readdata(char datafile[], int firsto
|
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
/* if (errno == ERANGE && (lval == LONG_MAX || lval == LONG_MIN))*/ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a status of wave %d. Setting maxwav=%d might be wrong. Exiting.\n", strb, linei,i,line,j,maxwav);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
Line 4615 int readdata(char datafile[], int firsto
|
Line 4660 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of interview (mm/yyyy or .) at wave %d. Exiting.\n",strb, linei,i, line,j);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
anint[j][i]= (double) year; |
anint[j][i]= (double) year; |
Line 4631 int readdata(char datafile[], int firsto
|
Line 4676 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of death (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
andc[i]=(double) year; |
andc[i]=(double) year; |
Line 4646 int readdata(char datafile[], int firsto
|
Line 4691 int readdata(char datafile[], int firsto
|
month=99; |
month=99; |
year=9999; |
year=9999; |
}else{ |
}else{ |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy or .). Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
if (year==9999) { |
if (year==9999) { |
printf("Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line); |
fprintf(ficlog,"Error reading data around '%s' at line number %ld for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be a date of birth (mm/yyyy) but at least the year of birth should be given. Exiting.\n",strb, linei,i,line);fflush(ficlog); |
return 1; |
return 1; |
|
|
} |
} |
Line 4664 int readdata(char datafile[], int firsto
|
Line 4709 int readdata(char datafile[], int firsto
|
errno=0; |
errno=0; |
dval=strtod(strb,&endptr); |
dval=strtod(strb,&endptr); |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%f' at line number %ld, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
printf("Error reading data around '%f' at line number %d, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fprintf(ficlog,"Error reading data around '%f' at line number %ld, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fprintf(ficlog,"Error reading data around '%f' at line number %d, \"%s\" for individual %d\nShould be a weight. Exiting.\n",dval, i,line,linei); |
fflush(ficlog); |
fflush(ficlog); |
return 1; |
return 1; |
} |
} |
Line 4680 int readdata(char datafile[], int firsto
|
Line 4725 int readdata(char datafile[], int firsto
|
errno=0; |
errno=0; |
lval=strtol(strb,&endptr,10); |
lval=strtol(strb,&endptr,10); |
if( strb[0]=='\0' || (*endptr != '\0')){ |
if( strb[0]=='\0' || (*endptr != '\0')){ |
printf("Error reading data around '%d' at line number %ld for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line); |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line); |
fprintf(ficlog,"Error reading data around '%d' at line number %ld for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\nShould be a covariate value (=0 for the reference or 1 for alternative). Exiting.\n",lval, linei,i, line);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
} |
} |
if(lval <-1 || lval >1){ |
if(lval <-1 || lval >1){ |
printf("Error reading data around '%d' at line number %ld for individual %d, '%s'\n \ |
printf("Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
Line 4695 int readdata(char datafile[], int firsto
|
Line 4740 int readdata(char datafile[], int firsto
|
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
and V1=0 V2=1 for (3). V1=1 V2=1 should not exist and the corresponding\n \ |
output of IMaCh is often meaningless.\n \ |
output of IMaCh is often meaningless.\n \ |
Exiting.\n",lval,linei, i,line,j); |
Exiting.\n",lval,linei, i,line,j); |
fprintf(ficlog,"Error reading data around '%d' at line number %ld for individual %d, '%s'\n \ |
fprintf(ficlog,"Error reading data around '%ld' at line number %d for individual %d, '%s'\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
Should be a value of %d(nth) covariate (0 should be the value for the reference and 1\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
for the alternative. IMaCh does not build design variables automatically, do it yourself.\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
For example, for multinomial values like 1, 2 and 3,\n \ |
Line 4757 int decodemodel ( char model[], int last
|
Line 4802 int decodemodel ( char model[], int last
|
fprintf(ficlog,"Error. AGE must be in lower case model=%s ",model);fflush(ficlog); |
fprintf(ficlog,"Error. AGE must be in lower case model=%s ",model);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
|
if (strstr(model,"v") !=0){ |
|
printf("Error. 'v' must be in upper case 'V' model=%s ",model); |
|
fprintf(ficlog,"Error. 'v' must be in upper case model=%s ",model);fflush(ficlog); |
|
return 1; |
|
} |
|
|
/* This loop fills the array Tvar from the string 'model'.*/ |
/* This loop fills the array Tvar from the string 'model'.*/ |
/* j is the number of + signs in the model V1+V2+V3 j=2 i=3 to 1 */ |
/* j is the number of + signs in the model V1+V2+V3 j=2 i=3 to 1 */ |
Line 4897 calandcheckages(int imx, int maxwav, dou
|
Line 4947 calandcheckages(int imx, int maxwav, dou
|
} |
} |
else if(agev[m][i] >*agemax){ |
else if(agev[m][i] >*agemax){ |
*agemax=agev[m][i]; |
*agemax=agev[m][i]; |
/* printf(" anint[%d][%d]=%.0f annais[%d]=%.0f, agemax=%.0f\n",m,i,anint[m][i], i,annais[i], agemax);*/ |
printf(" Max anint[%d][%d]=%.0f annais[%d]=%.0f, agemax=%.2f\n",m,i,anint[m][i], i,annais[i], *agemax); |
} |
} |
/*agev[m][i]=anint[m][i]-annais[i];*/ |
/*agev[m][i]=anint[m][i]-annais[i];*/ |
/* agev[m][i] = age[i]+2*m;*/ |
/* agev[m][i] = age[i]+2*m;*/ |
Line 4931 calandcheckages(int imx, int maxwav, dou
|
Line 4981 calandcheckages(int imx, int maxwav, dou
|
}*/ |
}*/ |
|
|
|
|
printf("Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, agemin, agemax); |
printf("Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, agemin, agemax); |
fprintf(ficlog,"Total number of individuals= %d, Agemin = %.2f, Agemax= %.2f\n\n", imx, *agemin, *agemax); |
|
|
return (0); |
return (0); |
endread: |
endread: |
Line 5153 int main(int argc, char *argv[])
|
Line 5203 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5169 int main(int argc, char *argv[])
|
Line 5219 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line, stdout); |
|
//puts(line); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5222 int main(int argc, char *argv[])
|
Line 5273 int main(int argc, char *argv[])
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5272 run imach with mle=-1 to get a correct t
|
Line 5323 run imach with mle=-1 to get a correct t
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5313 run imach with mle=-1 to get a correct t
|
Line 5364 run imach with mle=-1 to get a correct t
|
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
numlinepar++; |
numlinepar++; |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
fputs(line,ficlog); |
fputs(line,ficlog); |
} |
} |
Line 5381 run imach with mle=-1 to get a correct t
|
Line 5432 run imach with mle=-1 to get a correct t
|
anint=matrix(1,maxwav,1,n); |
anint=matrix(1,maxwav,1,n); |
s=imatrix(1,maxwav+1,1,n); /* s[i][j] health state for wave i and individual j */ |
s=imatrix(1,maxwav+1,1,n); /* s[i][j] health state for wave i and individual j */ |
tab=ivector(1,NCOVMAX); |
tab=ivector(1,NCOVMAX); |
ncodemax=ivector(1,8); /* hard coded ? */ |
ncodemax=ivector(1,NCOVMAX); /* Number of code per covariate; if O and 1 only, 2**ncov; V1+V2+V3+V4=>16 */ |
|
|
/* Reads data from file datafile */ |
/* Reads data from file datafile */ |
if (readdata(datafile, firstobs, lastobs, &imx)==1) |
if (readdata(datafile, firstobs, lastobs, &imx)==1) |
Line 5404 run imach with mle=-1 to get a correct t
|
Line 5455 run imach with mle=-1 to get a correct t
|
ncovcol + k1 |
ncovcol + k1 |
If already ncovcol=4 and model=V2+V1+V1*V4+age*V3 |
If already ncovcol=4 and model=V2+V1+V1*V4+age*V3 |
Tvar[3=V1*V4]=4+1 etc */ |
Tvar[3=V1*V4]=4+1 etc */ |
Tprod=ivector(1,15); |
Tprod=ivector(1,15); /* Gives the position of a product */ |
/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 |
/* Tprod[k1=1]=3(=V1*V4) for V2+V1+V1*V4+age*V3 |
if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) |
if V2+V1+V1*V4+age*V3+V3*V2 TProd[k1=2]=5 (V3*V2) |
*/ |
*/ |
Tvaraff=ivector(1,15); |
Tvaraff=ivector(1,15); |
Tvard=imatrix(1,15,1,2); /* For V3*V2 Tvard[k1=2][1]=3 (V3) Tvard[k1=2][2]=2(V2) */ |
Tvard=imatrix(1,15,1,2); /* n=Tvard[k1][1] and m=Tvard[k1][2] gives the couple n,m of the k1 th product Vn*Vm |
|
* For V3*V2 (in V2+V1+V1*V4+age*V3+V3*V2), V3*V2 position is 2nd. |
|
* Tvard[k1=2][1]=3 (V3) Tvard[k1=2][2]=2(V2) */ |
Tage=ivector(1,15); /* Gives the covariate id of covariates associated with age: V2 + V1 + age*V4 + V3*age |
Tage=ivector(1,15); /* Gives the covariate id of covariates associated with age: V2 + V1 + age*V4 + V3*age |
4 covariates (3 plus signs) |
4 covariates (3 plus signs) |
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
Line 5458 run imach with mle=-1 to get a correct t
|
Line 5511 run imach with mle=-1 to get a correct t
|
ncodemax[1]=1; |
ncodemax[1]=1; |
if (cptcovn > 0) tricode(Tvar,nbcode,imx); |
if (cptcovn > 0) tricode(Tvar,nbcode,imx); |
|
|
codtab=imatrix(1,100,1,10); /* Cross tabulation to get the order of |
codtab=imatrix(1,100,1,10); /**< codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) |
the estimations*/ |
*/ |
h=0; |
h=0; |
m=pow(2,cptcoveff); |
m=pow(2,cptcoveff); |
|
|
for(k=1;k<=cptcoveff; k++){ /* scans any effective covariate */ |
for(k=1;k<=cptcoveff; k++){ /* scans any effective covariate */ |
for(i=1; i <=(m/pow(2,k));i++){ /* i=1 to 8/1=8; i=1 to 8/2=4; i=1 to 8/8=1 */ |
for(i=1; i <=pow(2,cptcoveff-k);i++){ /* i=1 to 8/1=8; i=1 to 8/2=4; i=1 to 8/8=1 */ |
for(j=1; j <= ncodemax[k]; j++){ /* For each modality of this covariate */ |
for(j=1; j <= ncodemax[k]; j++){ /* For each modality of this covariate ncodemax=2*/ |
for(cpt=1; cpt <=(m/pow(2,cptcoveff+1-k)); cpt++){ /* cpt=1 to 8/2**(3+1-1 or 3+1-3) =1 or 4 */ |
for(cpt=1; cpt <=pow(2,k-1); cpt++){ /* cpt=1 to 8/2**(3+1-1 or 3+1-3) =1 or 4 */ |
h++; |
h++; |
if (h>m) { |
if (h>m) |
h=1; |
h=1; |
codtab[h][k]=j; |
/**< codtab(h,k) k = codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) + 1 |
codtab[h][Tvar[k]]=j; |
* h 1 2 3 4 |
} |
*______________________________ |
|
* 1 i=1 1 i=1 1 i=1 1 i=1 1 |
|
* 2 2 1 1 1 |
|
* 3 i=2 1 2 1 1 |
|
* 4 2 2 1 1 |
|
* 5 i=3 1 i=2 1 2 1 |
|
* 6 2 1 2 1 |
|
* 7 i=4 1 2 2 1 |
|
* 8 2 2 2 1 |
|
* 9 i=5 1 i=3 1 i=2 1 1 |
|
* 10 2 1 1 1 |
|
* 11 i=6 1 2 1 1 |
|
* 12 2 2 1 1 |
|
* 13 i=7 1 i=4 1 2 1 |
|
* 14 2 1 2 1 |
|
* 15 i=8 1 2 2 1 |
|
* 16 2 2 2 1 |
|
*/ |
|
codtab[h][k]=j; |
|
codtab[h][Tvar[k]]=j; |
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
} |
} |
} |
} |
Line 5500 run imach with mle=-1 to get a correct t
|
Line 5572 run imach with mle=-1 to get a correct t
|
else{ |
else{ |
fprintf(ficgp,"\n# %s\n", version); |
fprintf(ficgp,"\n# %s\n", version); |
fprintf(ficgp,"# %s\n", optionfilegnuplot); |
fprintf(ficgp,"# %s\n", optionfilegnuplot); |
fprintf(ficgp,"set missing 'NaNq'\n"); |
//fprintf(ficgp,"set missing 'NaNq'\n"); |
|
fprintf(ficgp,"set datafile missing 'NaNq'\n"); |
} |
} |
/* fclose(ficgp);*/ |
/* fclose(ficgp);*/ |
/*--------- index.htm --------*/ |
/*--------- index.htm --------*/ |
Line 5939 Interval (in months) between two waves:
|
Line 6012 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5959 Interval (in months) between two waves:
|
Line 6032 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5973 Interval (in months) between two waves:
|
Line 6046 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 5989 Interval (in months) between two waves:
|
Line 6062 Interval (in months) between two waves:
|
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
puts(line); |
fputs(line,stdout); |
fputs(line,ficparo); |
fputs(line,ficparo); |
} |
} |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
Line 6049 Interval (in months) between two waves:
|
Line 6122 Interval (in months) between two waves:
|
agebase=ageminpar; |
agebase=ageminpar; |
agelim=agemaxpar; |
agelim=agemaxpar; |
ftolpl=1.e-10; |
ftolpl=1.e-10; |
i1=cptcoveff; |
i1=pow(2,cptcoveff); |
if (cptcovn < 1){i1=1;} |
if (cptcovn < 1){i1=1;} |
|
|
for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
//for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
k=k+1; |
k=k+1; |
/* to clean */ |
/* to clean */ |
printf("cptcov=%d cptcod=%d codtab=%d nbcode=%d\n",cptcov, cptcod,codtab[cptcod][cptcov],nbcode); |
//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtab[cptcod][cptcov]); |
fprintf(ficrespl,"\n#******"); |
fprintf(ficrespl,"\n#******"); |
printf("\n#******"); |
printf("\n#******"); |
fprintf(ficlog,"\n#******"); |
fprintf(ficlog,"\n#******"); |
Line 6077 Interval (in months) between two waves:
|
Line 6150 Interval (in months) between two waves:
|
for(i=1; i<=nlstate;i++) |
for(i=1; i<=nlstate;i++) |
fprintf(ficrespl," %.5f", prlim[i][i]); |
fprintf(ficrespl," %.5f", prlim[i][i]); |
fprintf(ficrespl,"\n"); |
fprintf(ficrespl,"\n"); |
} |
} /* Age */ |
} |
/* was end of cptcod */ |
} |
} /* cptcov */ |
fclose(ficrespl); |
fclose(ficrespl); |
|
|
/*------------- h Pij x at various ages ------------*/ |
/*------------- h Pij x at various ages ------------*/ |
Line 6366 Interval (in months) between two waves:
|
Line 6439 Interval (in months) between two waves:
|
/*---------- End : free ----------------*/ |
/*---------- End : free ----------------*/ |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
free_ma3x(probs,1,AGESUP,1,NCOVMAX, 1,NCOVMAX); |
|
|
} /* mle==-3 arrives here for freeing */ |
} /* mle==-3 arrives here for freeing */ |
endfree: |
endfree: |
free_matrix(prlim,1,nlstate,1,nlstate); |
free_matrix(prlim,1,nlstate,1,nlstate); /*here or after loop ? */ |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(pmmij,1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
Line 6410 Interval (in months) between two waves:
|
Line 6482 Interval (in months) between two waves:
|
fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
|
|
printf("Total time was %d Sec.\n", end_time.tv_sec -start_time.tv_sec); |
printf("Total time was %ld Sec.\n", end_time.tv_sec -start_time.tv_sec); |
fprintf(ficlog,"Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
fprintf(ficlog,"Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout)); |
fprintf(ficlog,"Total time was %d Sec.\n", end_time.tv_sec -start_time.tv_sec); |
fprintf(ficlog,"Total time was %ld Sec.\n", end_time.tv_sec -start_time.tv_sec); |
/* printf("Total time was %d uSec.\n", total_usecs);*/ |
/* printf("Total time was %d uSec.\n", total_usecs);*/ |
/* if(fileappend(fichtm,optionfilehtm)){ */ |
/* if(fileappend(fichtm,optionfilehtm)){ */ |
fprintf(fichtm,"<br>Local time at start %s<br>Local time at end %s<br>\n</body></html>",strstart, strtend); |
fprintf(fichtm,"<br>Local time at start %s<br>Local time at end %s<br>\n</body></html>",strstart, strtend); |