version 1.145, 2014/06/10 21:23:15
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version 1.153, 2014/06/20 16:45:46
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.153 2014/06/20 16:45:46 brouard |
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Summary: If 3 live state, convergence to period prevalence on same graph |
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Author: Brouard |
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Revision 1.152 2014/06/18 17:54:09 brouard |
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Summary: open browser, use gnuplot on same dir than imach if not found in the path |
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Revision 1.151 2014/06/18 16:43:30 brouard |
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*** empty log message *** |
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Revision 1.150 2014/06/18 16:42:35 brouard |
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Summary: If gnuplot is not in the path try on same directory than imach binary (OSX) |
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Author: brouard |
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Revision 1.149 2014/06/18 15:51:14 brouard |
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Summary: Some fixes in parameter files errors |
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Author: Nicolas Brouard |
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Revision 1.148 2014/06/17 17:38:48 brouard |
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Summary: Nothing new |
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Author: Brouard |
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Just a new packaging for OS/X version 0.98nS |
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Revision 1.147 2014/06/16 10:33:11 brouard |
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*** empty log message *** |
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Revision 1.146 2014/06/16 10:20:28 brouard |
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Summary: Merge |
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Author: Brouard |
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Merge, before building revised version. |
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Revision 1.145 2014/06/10 21:23:15 brouard |
Revision 1.145 2014/06/10 21:23:15 brouard |
Summary: Debugging with valgrind |
Summary: Debugging with valgrind |
Author: Nicolas Brouard |
Author: Nicolas Brouard |
Line 480 extern int errno;
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Line 513 extern int errno;
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98nR2, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char version[]="Imach version 0.98nT, January 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121)"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 3961 void printinggnuplot(char fileres[], cha
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Line 3994 void printinggnuplot(char fileres[], cha
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strcpy(dirfileres,optionfilefiname); |
strcpy(dirfileres,optionfilefiname); |
strcpy(optfileres,"vpl"); |
strcpy(optfileres,"vpl"); |
/* 1eme*/ |
/* 1eme*/ |
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fprintf(ficgp,"\n# 1st: Period (stable) prevalence with CI: 'vpl' files\n"); |
for (cpt=1; cpt<= nlstate ; cpt ++) { |
for (cpt=1; cpt<= nlstate ; cpt ++) { |
for (k1=1; k1<= m ; k1 ++) { /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
for (k1=1; k1<= m ; k1 ++) { /* plot [100000000000000000000:-100000000000000000000] "mysbiaspar/vplrmysbiaspar.txt to check */ |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"v"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"v"),cpt,k1); |
Line 3988 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 4022 plot [%.f:%.f] \"%s\" every :::%d::%d u
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} |
} |
} |
} |
/*2 eme*/ |
/*2 eme*/ |
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fprintf(ficgp,"\n# 2nd: Total life expectancy with CI: 't' files\n"); |
for (k1=1; k1<= m ; k1 ++) { |
for (k1=1; k1<= m ; k1 ++) { |
fprintf(ficgp,"\nset out \"%s%d.png\" \n",subdirf2(optionfilefiname,"e"),k1); |
fprintf(ficgp,"\nset out \"%s%d.png\" \n",subdirf2(optionfilefiname,"e"),k1); |
fprintf(ficgp,"set ylabel \"Years\" \nset ter png small size 320, 240\nplot [%.f:%.f] ",ageminpar,fage); |
fprintf(ficgp,"set ylabel \"Years\" \nset ter png small size 320, 240\nplot [%.f:%.f] ",ageminpar,fage); |
Line 4045 plot [%.f:%.f] \"%s\" every :::%d::%d u
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Line 4079 plot [%.f:%.f] \"%s\" every :::%d::%d u
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} |
} |
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/* CV preval stable (period) */ |
/* CV preval stable (period) */ |
for (k1=1; k1<= m ; k1 ++) { |
for (k1=1; k1<= m ; k1 ++) { /* For each multivariate if any */ |
for (cpt=1; cpt<=nlstate ; cpt ++) { |
for (cpt=1; cpt<=nlstate ; cpt ++) { /* For each life state */ |
k=3; |
k=3; |
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fprintf(ficgp,"\n#\n#\n#CV preval stable (period): 'pij' files, cov=%d state=%d",k1, cpt); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
fprintf(ficgp,"\nset out \"%s%d_%d.png\" \n",subdirf2(optionfilefiname,"p"),cpt,k1); |
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l=(nlstate+ndeath)*(cpt-1)+1; |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \n\ |
set ter png small size 320, 240\n\ |
set ter png small size 320, 240\n\ |
unset log y\n\ |
unset log y\n\ |
plot [%.f:%.f] \"%s\" u ($1==%d ? ($3):1/0):($%d/($%d",ageminpar,agemaxpar,subdirf2(fileres,"pij"),k1,k+cpt+1,k+1); |
plot [%.f:%.f] ", ageminpar, agemaxpar); |
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for (i=1; i<= nlstate ; i ++){ |
for (i=1; i< nlstate ; i ++) |
if(i==1) |
fprintf(ficgp,"+$%d",k+i+1); |
fprintf(ficgp,"\"%s\"",subdirf2(fileres,"pij")); |
fprintf(ficgp,")) t\"prev(%d,%d)\" w l",cpt,cpt+1); |
else |
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fprintf(ficgp,", '' "); |
l=3+(nlstate+ndeath)*cpt; |
fprintf(ficgp," u ($1==%d ? ($3):1/0):($%d/($%d",k1,k+l,k+l); |
fprintf(ficgp,",\"%s\" u ($1==%d ? ($3):1/0):($%d/($%d",subdirf2(fileres,"pij"),k1,l+cpt+1,l+1); |
for (j=1; j<= (nlstate-1) ; j ++) |
for (i=1; i< nlstate ; i ++) { |
fprintf(ficgp,"+$%d",k+l+j); |
l=3+(nlstate+ndeath)*cpt; |
fprintf(ficgp,")) t \"prev(%d,%d)\" w l",i,cpt); |
fprintf(ficgp,"+$%d",l+i+1); |
} /* nlstate */ |
} |
fprintf(ficgp,"\n"); |
fprintf(ficgp,")) t\"prev(%d,%d)\" w l\n",cpt+1,cpt+1); |
} /* end cpt state*/ |
} |
} /* end covariate */ |
} |
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/* proba elementaires */ |
/* proba elementaires */ |
for(i=1,jk=1; i <=nlstate; i++){ |
for(i=1,jk=1; i <=nlstate; i++){ |
Line 5370 int main(int argc, char *argv[])
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Line 5405 int main(int argc, char *argv[])
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/*---------arguments file --------*/ |
/*---------arguments file --------*/ |
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if((ficpar=fopen(optionfile,"r"))==NULL) { |
if((ficpar=fopen(optionfile,"r"))==NULL) { |
printf("Problem with optionfile %s\n",optionfile); |
printf("Problem with optionfile %s with errno=%s\n",optionfile,strerror(errno)); |
fprintf(ficlog,"Problem with optionfile %s\n",optionfile); |
fprintf(ficlog,"Problem with optionfile %s with errno=%s\n",optionfile,strerror(errno)); |
fflush(ficlog); |
fflush(ficlog); |
goto end; |
/* goto end; */ |
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exit(70); |
} |
} |
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Line 6643 Interval (in months) between two waves:
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Line 6679 Interval (in months) between two waves:
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printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
printf("Starting graphs with: %s\n",plotcmd);fflush(stdout); |
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if((outcmd=system(plotcmd)) != 0){ |
if((outcmd=system(plotcmd)) != 0){ |
printf("\n Problem with gnuplot\n"); |
printf("\n Problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
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printf("\n Trying on same directory\n"); |
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sprintf(plotcmd,"%sgnuplot %s", pathimach, optionfilegnuplot); |
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if((outcmd=system(plotcmd)) != 0) |
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printf("\n Still a problem with gnuplot command %s, err=%d\n", plotcmd, outcmd); |
} |
} |
printf(" Wait..."); |
printf(" Wait..."); |
while (z[0] != 'q') { |
while (z[0] != 'q') { |
Line 6652 Interval (in months) between two waves:
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Line 6692 Interval (in months) between two waves:
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scanf("%s",z); |
scanf("%s",z); |
/* if (z[0] == 'c') system("./imach"); */ |
/* if (z[0] == 'c') system("./imach"); */ |
if (z[0] == 'e') { |
if (z[0] == 'e') { |
printf("Starting browser with: %s",optionfilehtm);fflush(stdout); |
#ifdef OSX |
system(optionfilehtm); |
sprintf(pplotcmd, "open %s", optionfilehtm); |
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#else |
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sprintf(pplotcmd, "%s", optionfilehtm); |
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#endif |
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printf("Starting browser with: %s",pplotcmd);fflush(stdout); |
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system(pplotcmd); |
} |
} |
else if (z[0] == 'g') system(plotcmd); |
else if (z[0] == 'g') system(plotcmd); |
else if (z[0] == 'q') exit(0); |
else if (z[0] == 'q') exit(0); |