version 1.173, 2015/01/03 12:06:26
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version 1.180, 2015/02/11 17:33:45
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.180 2015/02/11 17:33:45 brouard |
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Summary: Finishing move from main to function (hpijx and prevalence_limit) |
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Revision 1.179 2015/01/04 09:57:06 brouard |
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Summary: back to OS/X |
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Revision 1.178 2015/01/04 09:35:48 brouard |
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*** empty log message *** |
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Revision 1.177 2015/01/03 18:40:56 brouard |
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Summary: Still testing ilc32 on OSX |
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Revision 1.176 2015/01/03 16:45:04 brouard |
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*** empty log message *** |
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Revision 1.175 2015/01/03 16:33:42 brouard |
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*** empty log message *** |
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Revision 1.174 2015/01/03 16:15:49 brouard |
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Summary: Still in cross-compilation |
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Revision 1.173 2015/01/03 12:06:26 brouard |
Revision 1.173 2015/01/03 12:06:26 brouard |
Summary: trying to detect cross-compilation |
Summary: trying to detect cross-compilation |
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Line 620 typedef struct {
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Line 641 typedef struct {
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98p, December 2014,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char version[]="Imach version 0.98p, FĂ©vrier 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 2262 void mlikeli(FILE *ficres,double p[], in
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Line 2283 void mlikeli(FILE *ficres,double p[], in
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#endif |
#endif |
free_matrix(xi,1,npar,1,npar); |
free_matrix(xi,1,npar,1,npar); |
fclose(ficrespow); |
fclose(ficrespow); |
printf("\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
printf("#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
fprintf(ficlog,"\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
fprintf(ficlog,"#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
fprintf(ficres,"\n#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
fprintf(ficres,"#Number of iterations & function calls = %d & %d, -2 Log likelihood = %.12f\n",iter, countcallfunc,func(p)); |
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} |
} |
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Line 5495 BOOL IsWow64()
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Line 5516 BOOL IsWow64()
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return bIsWow64 != FALSE; |
return bIsWow64 != FALSE; |
} |
} |
#endif |
#endif |
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void syscompilerinfo() |
void syscompilerinfo() |
{ |
{ |
/* #include "syscompilerinfo.h"*/ |
/* #include "syscompilerinfo.h"*/ |
/* #include <gnu/libc-version.h> */ /* Only on gnu */ |
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#if defined __INTEL_COMPILER |
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#if defined(__GNUC__) |
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struct utsname sysInfo; /* For Intel on Linux and OS/X */ |
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#endif |
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#elif defined(__GNUC__) |
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#ifndef __APPLE__ |
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#include <gnu/libc-version.h> /* Only on gnu */ |
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#endif |
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struct utsname sysInfo; |
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int cross = CROSS; |
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if (cross){ |
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printf("Cross-"); |
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fprintf(ficlog, "Cross-"); |
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} |
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#endif |
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#include <stdint.h> |
#include <stdint.h> |
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printf("Compiled with:");fprintf(ficlog,"Compiled with:"); |
printf("Compiled with:");fprintf(ficlog,"Compiled with:"); |
#if defined(__clang__) |
#if defined(__clang__) |
printf(" Clang/LLVM");fprintf(ficlog," Clang/LLVM"); /* Clang/LLVM. ---------------------------------------------- */ |
printf(" Clang/LLVM");fprintf(ficlog," Clang/LLVM"); /* Clang/LLVM. ---------------------------------------------- */ |
Line 5525 void syscompilerinfo()
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Line 5564 void syscompilerinfo()
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#if defined(__SUNPRO_C) || defined(__SUNPRO_CC) |
#if defined(__SUNPRO_C) || defined(__SUNPRO_CC) |
printf(" Oracle Solaris Studio");fprintf(ficlog," Oracle Solaris Studio\n");/* Oracle Solaris Studio. ----------------------------------- */ |
printf(" Oracle Solaris Studio");fprintf(ficlog," Oracle Solaris Studio\n");/* Oracle Solaris Studio. ----------------------------------- */ |
#endif |
#endif |
printf(". ");fprintf(ficlog,". "); |
printf(" for ");fprintf(ficlog," for "); |
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// http://stackoverflow.com/questions/4605842/how-to-identify-platform-compiler-from-preprocessor-macros |
// http://stackoverflow.com/questions/4605842/how-to-identify-platform-compiler-from-preprocessor-macros |
#ifdef _WIN32 // note the underscore: without it, it's not msdn official! |
#ifdef _WIN32 // note the underscore: without it, it's not msdn official! |
// Windows (x64 and x86) |
// Windows (x64 and x86) |
printf("Windows (x64 and x86). ");fprintf(ficlog,"Windows (x64 and x86). "); |
printf("Windows (x64 and x86) ");fprintf(ficlog,"Windows (x64 and x86) "); |
#elif __unix__ // all unices, not all compilers |
#elif __unix__ // all unices, not all compilers |
// Unix |
// Unix |
printf("Unix. ");fprintf(ficlog,"Unix. "); |
printf("Unix ");fprintf(ficlog,"Unix "); |
#elif __linux__ |
#elif __linux__ |
// linux |
// linux |
printf("linux. ");fprintf(ficlog,"linux. "); |
printf("linux ");fprintf(ficlog,"linux "); |
#elif __APPLE__ |
#elif __APPLE__ |
// Mac OS, not sure if this is covered by __posix__ and/or __unix__ though... |
// Mac OS, not sure if this is covered by __posix__ and/or __unix__ though.. |
printf("Mac OS. ");fprintf(ficlog,"Mac OS. "); |
printf("Mac OS ");fprintf(ficlog,"Mac OS "); |
#endif |
#endif |
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/* __MINGW32__ */ |
/* __MINGW32__ */ |
Line 5553 void syscompilerinfo()
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Line 5592 void syscompilerinfo()
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/* _DEBUG // Defined when you compile with /LDd, /MDd, and /MTd. */ |
/* _DEBUG // Defined when you compile with /LDd, /MDd, and /MTd. */ |
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#if UINTPTR_MAX == 0xffffffff |
#if UINTPTR_MAX == 0xffffffff |
printf(" 32-bit.\n"); fprintf(ficlog," 32-bit.\n");/* 32-bit */ |
printf(" 32-bit"); fprintf(ficlog," 32-bit");/* 32-bit */ |
#elif UINTPTR_MAX == 0xffffffffffffffff |
#elif UINTPTR_MAX == 0xffffffffffffffff |
printf(" 64-bit.\n"); fprintf(ficlog," 64-bit.\n");/* 64-bit */ |
printf(" 64-bit"); fprintf(ficlog," 64-bit");/* 64-bit */ |
#else |
#else |
printf(" wtf-bit.\n"); fprintf(ficlog," wtf-bit.\n");/* wtf */ |
printf(" wtf-bit"); fprintf(ficlog," wtf-bit");/* wtf */ |
#endif |
#endif |
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/* struct utsname sysInfo; |
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if (uname(&sysInfo) != -1) { |
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printf(" %s %s %s %s %s\n",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
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fprintf(ficlog," %s %s %s %s %s\n ",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
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} |
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else |
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perror("uname() error"); |
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*/ |
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#if defined(__GNUC__) |
#if defined(__GNUC__) |
# if defined(__GNUC_PATCHLEVEL__) |
# if defined(__GNUC_PATCHLEVEL__) |
# define __GNUC_VERSION__ (__GNUC__ * 10000 \ |
# define __GNUC_VERSION__ (__GNUC__ * 10000 \ |
Line 5578 void syscompilerinfo()
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Line 5608 void syscompilerinfo()
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# define __GNUC_VERSION__ (__GNUC__ * 10000 \ |
# define __GNUC_VERSION__ (__GNUC__ * 10000 \ |
+ __GNUC_MINOR__ * 100) |
+ __GNUC_MINOR__ * 100) |
# endif |
# endif |
printf("GNU C version %d.\n", __GNUC_VERSION__); |
printf(" using GNU C version %d.\n", __GNUC_VERSION__); |
fprintf(ficlog, "GNU C version %d.\n", __GNUC_VERSION__); |
fprintf(ficlog, " using GNU C version %d.\n", __GNUC_VERSION__); |
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if (uname(&sysInfo) != -1) { |
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printf("Running on: %s %s %s %s %s\n",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
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fprintf(ficlog,"Running on: %s %s %s %s %s\n ",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
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} |
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else |
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perror("uname() error"); |
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//#ifndef __INTEL_COMPILER |
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#if !defined (__INTEL_COMPILER) && !defined(__APPLE__) |
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printf("GNU libc version: %s\n", gnu_get_libc_version()); |
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fprintf(ficlog,"GNU libc version: %s\n", gnu_get_libc_version()); |
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#endif |
#endif |
#endif |
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// void main() |
// void main() |
// { |
// { |
#if defined(_MSC_VER) |
#if defined(_MSC_VER) |
if (IsWow64()) |
if (IsWow64()){ |
printf("The process is running under WOW64.\n"); |
printf("The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
else |
fprintf(ficlog, "The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
printf("The process is not running under WOW64.\n"); |
} |
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else{ |
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printf("The process is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
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fprintf(ficlog,"The programm is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
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} |
// printf("\nPress Enter to continue..."); |
// printf("\nPress Enter to continue..."); |
// getchar(); |
// getchar(); |
// } |
// } |
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#endif |
#endif |
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/* printf("GNU libc version: %s\n", gnu_get_libc_version()); */ |
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} |
} |
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int prevalence_limit(double *p, double **prlim, double ageminpar, double agemaxpar){ |
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/*--------------- Prevalence limit (period or stable prevalence) --------------*/ |
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int i, j, k, i1 ; |
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double ftolpl = 1.e-10; |
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double age, agebase, agelim; |
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strcpy(filerespl,"pl"); |
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strcat(filerespl,fileres); |
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if((ficrespl=fopen(filerespl,"w"))==NULL) { |
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printf("Problem with period (stable) prevalence resultfile: %s\n", filerespl);return 1; |
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fprintf(ficlog,"Problem with period (stable) prevalence resultfile: %s\n", filerespl);return 1; |
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} |
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printf("Computing period (stable) prevalence: result on file '%s' \n", filerespl); |
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fprintf(ficlog,"Computing period (stable) prevalence: result on file '%s' \n", filerespl); |
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pstamp(ficrespl); |
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fprintf(ficrespl,"# Period (stable) prevalence \n"); |
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fprintf(ficrespl,"#Age "); |
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for(i=1; i<=nlstate;i++) fprintf(ficrespl,"%d-%d ",i,i); |
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fprintf(ficrespl,"\n"); |
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/* prlim=matrix(1,nlstate,1,nlstate);*/ /* back in main */ |
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agebase=ageminpar; |
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agelim=agemaxpar; |
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i1=pow(2,cptcoveff); |
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if (cptcovn < 1){i1=1;} |
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for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
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/* for(cptcov=1,k=0;cptcov<=1;cptcov++){ */ |
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//for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){ |
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k=k+1; |
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/* to clean */ |
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//printf("cptcov=%d cptcod=%d codtab=%d\n",cptcov, cptcod,codtab[cptcod][cptcov]); |
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fprintf(ficrespl,"\n#******"); |
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printf("\n#******"); |
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fprintf(ficlog,"\n#******"); |
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for(j=1;j<=cptcoveff;j++) { |
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fprintf(ficrespl," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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printf(" V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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fprintf(ficlog," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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} |
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fprintf(ficrespl,"******\n"); |
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printf("******\n"); |
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fprintf(ficlog,"******\n"); |
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fprintf(ficrespl,"#Age "); |
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for(j=1;j<=cptcoveff;j++) { |
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fprintf(ficrespl,"V%d %d",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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} |
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for(i=1; i<=nlstate;i++) fprintf(ficrespl,"%d-%d ",i,i); |
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fprintf(ficrespl,"\n"); |
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for (age=agebase; age<=agelim; age++){ |
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/* for (age=agebase; age<=agebase; age++){ */ |
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prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k); |
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fprintf(ficrespl,"%.0f ",age ); |
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for(j=1;j<=cptcoveff;j++) |
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fprintf(ficrespl,"%d %d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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for(i=1; i<=nlstate;i++) |
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fprintf(ficrespl," %.5f", prlim[i][i]); |
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fprintf(ficrespl,"\n"); |
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} /* Age */ |
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/* was end of cptcod */ |
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} /* cptcov */ |
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} |
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int hPijx(double *p, int bage, int fage){ |
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/*------------- h Pij x at various ages ------------*/ |
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int stepsize; |
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int agelim; |
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int hstepm; |
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int nhstepm; |
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int h, i, i1, j, k; |
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double agedeb; |
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double ***p3mat; |
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strcpy(filerespij,"pij"); strcat(filerespij,fileres); |
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if((ficrespij=fopen(filerespij,"w"))==NULL) { |
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printf("Problem with Pij resultfile: %s\n", filerespij); return 1; |
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fprintf(ficlog,"Problem with Pij resultfile: %s\n", filerespij); return 1; |
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} |
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printf("Computing pij: result on file '%s' \n", filerespij); |
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fprintf(ficlog,"Computing pij: result on file '%s' \n", filerespij); |
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stepsize=(int) (stepm+YEARM-1)/YEARM; |
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/*if (stepm<=24) stepsize=2;*/ |
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agelim=AGESUP; |
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hstepm=stepsize*YEARM; /* Every year of age */ |
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hstepm=hstepm/stepm; /* Typically 2 years, = 2/6 months = 4 */ |
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/* hstepm=1; aff par mois*/ |
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pstamp(ficrespij); |
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fprintf(ficrespij,"#****** h Pij x Probability to be in state j at age x+h being in i at x "); |
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i1= pow(2,cptcoveff); |
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for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
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/*for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
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k=k+1; |
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/* for (k=1; k <= (int) pow(2,cptcoveff); k++){*/ |
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fprintf(ficrespij,"\n#****** "); |
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for(j=1;j<=cptcoveff;j++) |
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fprintf(ficrespij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]); |
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fprintf(ficrespij,"******\n"); |
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for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */ |
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nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ |
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nhstepm = nhstepm/hstepm; /* Typically 40/4=10 */ |
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/* nhstepm=nhstepm*YEARM; aff par mois*/ |
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p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
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oldm=oldms;savm=savms; |
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hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k); |
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fprintf(ficrespij,"# Cov Agex agex+h hpijx with i,j="); |
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for(i=1; i<=nlstate;i++) |
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for(j=1; j<=nlstate+ndeath;j++) |
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fprintf(ficrespij," %1d-%1d",i,j); |
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fprintf(ficrespij,"\n"); |
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for (h=0; h<=nhstepm; h++){ |
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/*agedebphstep = agedeb + h*hstepm/YEARM*stepm;*/ |
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fprintf(ficrespij,"%d %3.f %3.f",k, agedeb, agedeb + h*hstepm/YEARM*stepm ); |
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for(i=1; i<=nlstate;i++) |
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for(j=1; j<=nlstate+ndeath;j++) |
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fprintf(ficrespij," %.5f", p3mat[i][j][h]); |
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fprintf(ficrespij,"\n"); |
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} |
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free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
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fprintf(ficrespij,"\n"); |
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} |
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/*}*/ |
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} |
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} |
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/***********************************************/ |
/***********************************************/ |
/**************** Main Program *****************/ |
/**************** Main Program *****************/ |
/***********************************************/ |
/***********************************************/ |
Line 6729 Interval (in months) between two waves:
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Line 6910 Interval (in months) between two waves:
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/*--------------- Prevalence limit (period or stable prevalence) --------------*/ |
/*--------------- Prevalence limit (period or stable prevalence) --------------*/ |
#include "prevlim.h" /* Use ficrespl, ficlog */ |
/*#include "prevlim.h"*/ /* Use ficrespl, ficlog */ |
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prlim=matrix(1,nlstate,1,nlstate); |
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prevalence_limit(p, prlim, ageminpar, agemaxpar); |
fclose(ficrespl); |
fclose(ficrespl); |
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#ifdef FREEEXIT2 |
#ifdef FREEEXIT2 |
Line 6737 Interval (in months) between two waves:
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Line 6920 Interval (in months) between two waves:
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#endif |
#endif |
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/*------------- h Pij x at various ages ------------*/ |
/*------------- h Pij x at various ages ------------*/ |
#include "hpijx.h" |
/*#include "hpijx.h"*/ |
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hPijx(p, bage, fage); |
fclose(ficrespij); |
fclose(ficrespij); |
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/*-------------- Variance of one-step probabilities---*/ |
/*-------------- Variance of one-step probabilities---*/ |