version 1.183, 2015/03/10 20:34:32
|
version 1.186, 2015/04/23 12:01:52
|
Line 1
|
Line 1
|
/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
|
Revision 1.186 2015/04/23 12:01:52 brouard |
|
Summary: V1*age is working now, version 0.98q1 |
|
|
|
Some codes had been disabled in order to simplify and Vn*age was |
|
working in the optimization phase, ie, giving correct MLE parameters, |
|
but, as usual, outputs were not correct and program core dumped. |
|
|
|
Revision 1.185 2015/03/11 13:26:42 brouard |
|
Summary: Inclusion of compile and links command line for Intel Compiler |
|
|
|
Revision 1.184 2015/03/11 11:52:39 brouard |
|
Summary: Back from Windows 8. Intel Compiler |
|
|
Revision 1.183 2015/03/10 20:34:32 brouard |
Revision 1.183 2015/03/10 20:34:32 brouard |
Summary: 0.98q0, trying with directest, mnbrak fixed |
Summary: 0.98q0, trying with directest, mnbrak fixed |
|
|
Line 573
|
Line 586
|
*/ |
*/ |
|
|
#define POWELL /* Instead of NLOPT */ |
#define POWELL /* Instead of NLOPT */ |
/* #define POWELLORIGINAL */ /* Don't use Directest to decide new direction but original Powell test */ |
/* #define POWELLORIGINAL /\* Don't use Directest to decide new direction but original Powell test *\/ */ |
|
/* #define MNBRAKORIGINAL /\* Don't use mnbrak fix *\/ */ |
|
|
#include <math.h> |
#include <math.h> |
#include <stdio.h> |
#include <stdio.h> |
Line 659 typedef struct {
|
Line 673 typedef struct {
|
/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
|
|
char version[]="Imach version 0.98q0, March 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char version[]="Imach version 0.98q1, April 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 823 static int split( char *path, char *dirc
|
Line 837 static int split( char *path, char *dirc
|
the name of the file (name), its extension only (ext) and its first part of the name (finame) |
the name of the file (name), its extension only (ext) and its first part of the name (finame) |
*/ |
*/ |
char *ss; /* pointer */ |
char *ss; /* pointer */ |
int l1, l2; /* length counters */ |
int l1=0, l2=0; /* length counters */ |
|
|
l1 = strlen(path ); /* length of path */ |
l1 = strlen(path ); /* length of path */ |
if ( l1 == 0 ) return( GLOCK_ERROR_NOPATH ); |
if ( l1 == 0 ) return( GLOCK_ERROR_NOPATH ); |
Line 834 static int split( char *path, char *dirc
|
Line 848 static int split( char *path, char *dirc
|
printf("Warning you should use %s as a separator\n",DIRSEPARATOR);*/ |
printf("Warning you should use %s as a separator\n",DIRSEPARATOR);*/ |
/* get current working directory */ |
/* get current working directory */ |
/* extern char* getcwd ( char *buf , int len);*/ |
/* extern char* getcwd ( char *buf , int len);*/ |
if ( getcwd( dirc, FILENAME_MAX ) == NULL ) { |
#ifdef WIN32 |
|
if (_getcwd( dirc, FILENAME_MAX ) == NULL ) { |
|
#else |
|
if (getcwd(dirc, FILENAME_MAX) == NULL) { |
|
#endif |
return( GLOCK_ERROR_GETCWD ); |
return( GLOCK_ERROR_GETCWD ); |
} |
} |
/* got dirc from getcwd*/ |
/* got dirc from getcwd*/ |
Line 845 static int split( char *path, char *dirc
|
Line 863 static int split( char *path, char *dirc
|
if ( l2 == 0 ) return( GLOCK_ERROR_NOPATH ); |
if ( l2 == 0 ) return( GLOCK_ERROR_NOPATH ); |
strcpy( name, ss ); /* save file name */ |
strcpy( name, ss ); /* save file name */ |
strncpy( dirc, path, l1 - l2 ); /* now the directory */ |
strncpy( dirc, path, l1 - l2 ); /* now the directory */ |
dirc[l1-l2] = 0; /* add zero */ |
dirc[l1-l2] = '\0'; /* add zero */ |
printf(" DIRC2 = %s \n",dirc); |
printf(" DIRC2 = %s \n",dirc); |
} |
} |
/* We add a separator at the end of dirc if not exists */ |
/* We add a separator at the end of dirc if not exists */ |
Line 1354 values at the three points, fa, fb , and
|
Line 1372 values at the three points, fa, fb , and
|
(*cx=10.098840694817, *fc=298946.631474258087), (*u=9.852501168332, fu=298948.773013752128, fparabu=298945.434711494134) */ |
(*cx=10.098840694817, *fc=298946.631474258087), (*u=9.852501168332, fu=298948.773013752128, fparabu=298945.434711494134) */ |
/* In that case, there is no bracket in the output! Routine is wrong with many consequences.*/ |
/* In that case, there is no bracket in the output! Routine is wrong with many consequences.*/ |
#endif |
#endif |
#ifdef MNBRAKORI |
#ifdef MNBRAKORIGINAL |
#else |
#else |
if (fu > *fc) { |
if (fu > *fc) { |
#ifdef DEBUG |
#ifdef DEBUG |
Line 1635 void powell(double p[], double **xi, int
|
Line 1653 void powell(double p[], double **xi, int
|
if (t < 0.0) { /* Then we use it for new direction */ |
if (t < 0.0) { /* Then we use it for new direction */ |
#else |
#else |
if (directest*t < 0.0) { /* Contradiction between both tests */ |
if (directest*t < 0.0) { /* Contradiction between both tests */ |
printf("directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt); |
printf("directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt,del); |
printf("f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
printf("f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
fprintf(ficlog,"directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt); |
fprintf(ficlog,"directest= %.12lf, t= %.12lf, f1= %.12lf,f2= %.12lf,f3= %.12lf, del= %.12lf\n",directest, t, fp,(*fret),fptt, del); |
fprintf(ficlog,"f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
fprintf(ficlog,"f1-2f2+f3= %.12lf, f1-f2-del= %.12lf, f1-f3= %.12lf\n",fp-2.0*(*fret)+fptt, fp -(*fret) -del, fp-fptt); |
} |
} |
if (directest < 0.0) { /* Then we use it for new direction */ |
if (directest < 0.0) { /* Then we use it for new direction */ |
Line 1696 double **prevalim(double **prlim, int nl
|
Line 1714 double **prevalim(double **prlim, int nl
|
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
/*printf("prevalim ij=%d k=%d Tvar[%d]=%d nbcode=%d cov=%lf codtab[%d][Tvar[%d]]=%d \n",ij,k, k, Tvar[k],nbcode[Tvar[k]][codtab[ij][Tvar[k]]],cov[2+k], ij, k, codtab[ij][Tvar[k]]);*/ |
/*printf("prevalim ij=%d k=%d Tvar[%d]=%d nbcode=%d cov=%lf codtab[%d][Tvar[%d]]=%d \n",ij,k, k, Tvar[k],nbcode[Tvar[k]][codtab[ij][Tvar[k]]],cov[2+k], ij, k, codtab[ij][Tvar[k]]);*/ |
} |
} |
/* for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ |
/*wrong? for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ |
/* for (k=1; k<=cptcovprod;k++) /\* Useless *\/ */ |
for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]*cov[2]; |
/* cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]] * nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; */ |
for (k=1; k<=cptcovprod;k++) /* Useless */ |
|
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]] * nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
|
|
/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/ |
Line 1868 double ***hpxij(double ***po, int nhstep
|
Line 1887 double ***hpxij(double ***po, int nhstep
|
cov[2]=age+((h-1)*hstepm + (d-1))*stepm/YEARM; |
cov[2]=age+((h-1)*hstepm + (d-1))*stepm/YEARM; |
for (k=1; k<=cptcovn;k++) |
for (k=1; k<=cptcovn;k++) |
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; |
for (k=1; k<=cptcovage;k++) |
for (k=1; k<=cptcovage;k++) /* Should start at cptcovn+1 */ |
cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; |
/* cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ |
|
cov[2+Tage[k]]=nbcode[Tvar[Tage[k]]][codtab[ij][Tvar[Tage[k]]]]*cov[2]; |
for (k=1; k<=cptcovprod;k++) /* Useless because included in cptcovn */ |
for (k=1; k<=cptcovprod;k++) /* Useless because included in cptcovn */ |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
|
|
Line 3096 void tricode(int *Tvar, int **nbcode, in
|
Line 3116 void tricode(int *Tvar, int **nbcode, in
|
for (k=1; k <= maxncov; k++) ncodemax[k]=0; /* Horrible constant again replaced by NCOVMAX */ |
for (k=1; k <= maxncov; k++) ncodemax[k]=0; /* Horrible constant again replaced by NCOVMAX */ |
|
|
/* Loop on covariates without age and products */ |
/* Loop on covariates without age and products */ |
for (j=1; j<=(cptcovs); j++) { /* model V1 + V2*age+ V3 + V3*V4 : V1 + V3 = 2 only */ |
for (j=1; j<=(cptcovs); j++) { /* From model V1 + V2*age+ V3 + V3*V4 keeps V1 + V3 = 2 only */ |
for (i=1; i<=imx; i++) { /* Lopp on individuals: reads the data file to get the maximum value of the |
for (i=1; i<=imx; i++) { /* Loop on individuals: reads the data file to get the maximum value of the |
modality of this covariate Vj*/ |
modality of this covariate Vj*/ |
ij=(int)(covar[Tvar[j]][i]); /* ij=0 or 1 or -1. Value of the covariate Tvar[j] for individual i |
ij=(int)(covar[Tvar[j]][i]); /* ij=0 or 1 or -1. Value of the covariate Tvar[j] for individual i |
* If product of Vn*Vm, still boolean *: |
* If product of Vn*Vm, still boolean *: |
Line 3134 void tricode(int *Tvar, int **nbcode, in
|
Line 3154 void tricode(int *Tvar, int **nbcode, in
|
} /* Ndum[-1] number of undefined modalities */ |
} /* Ndum[-1] number of undefined modalities */ |
|
|
/* j is a covariate, n=Tvar[j] of Vn; Fills nbcode */ |
/* j is a covariate, n=Tvar[j] of Vn; Fills nbcode */ |
/* For covariate j, modalities could be 1, 2, 3, 4. If Ndum[2]=0 ncodemax[j] is not 4 but 3 */ |
/* For covariate j, modalities could be 1, 2, 3, 4, 5, 6, 7. |
/* If Ndum[3}= 635; Ndum[4]=0; Ndum[5]=0; Ndum[6]=27; Ndum[7]=125; |
If Ndum[1]=0, Ndum[2]=0, Ndum[3]= 635, Ndum[4]=0, Ndum[5]=0, Ndum[6]=27, Ndum[7]=125; |
modmincovj=3; modmaxcovj = 7; |
modmincovj=3; modmaxcovj = 7; |
There are only 3 modalities non empty (or 2 if 27 is too few) : ncodemax[j]=3; |
There are only 3 modalities non empty 3, 6, 7 (or 2 if 27 is too few) : ncodemax[j]=3; |
which will be coded 0, 1, 2 which in binary on 3-1 digits are 0=00 1=01, 2=10; defining two dummy |
which will be coded 0, 1, 2 which in binary on 2=3-1 digits are 0=00 1=01, 2=10; |
variables V1_1 and V1_2. |
defining two dummy variables: variables V1_1 and V1_2. |
nbcode[Tvar[j]][ij]=k; |
nbcode[Tvar[j]][ij]=k; |
nbcode[Tvar[j]][1]=0; |
nbcode[Tvar[j]][1]=0; |
nbcode[Tvar[j]][2]=1; |
nbcode[Tvar[j]][2]=1; |
Line 3150 void tricode(int *Tvar, int **nbcode, in
|
Line 3170 void tricode(int *Tvar, int **nbcode, in
|
for (k=0; k<= cptcode; k++) { /* k=-1 ? k=0 to 1 *//* Could be 1 to 4 */ |
for (k=0; k<= cptcode; k++) { /* k=-1 ? k=0 to 1 *//* Could be 1 to 4 */ |
/*recode from 0 */ |
/*recode from 0 */ |
if (Ndum[k] != 0) { /* If at least one individual responded to this modality k */ |
if (Ndum[k] != 0) { /* If at least one individual responded to this modality k */ |
nbcode[Tvar[j]][ij]=k; /* stores the modality in an array nbcode. |
nbcode[Tvar[j]][ij]=k; /* stores the modality k in an array nbcode. |
k is a modality. If we have model=V1+V1*sex |
k is a modality. If we have model=V1+V1*sex |
then: nbcode[1][1]=0 ; nbcode[1][2]=1; nbcode[2][1]=0 ; nbcode[2][2]=1; */ |
then: nbcode[1][1]=0 ; nbcode[1][2]=1; nbcode[2][1]=0 ; nbcode[2][2]=1; */ |
ij++; |
ij++; |
Line 4027 To be simple, these graphs help to under
|
Line 4047 To be simple, these graphs help to under
|
*/ |
*/ |
/* nbcode[1][1]=0 nbcode[1][2]=1;*/ |
/* nbcode[1][1]=0 nbcode[1][2]=1;*/ |
} |
} |
for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; |
/* for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ |
|
for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=nbcode[Tvar[Tage[k]]][codtab[ij][Tvar[Tage[k]]]]*cov[2]; |
for (k=1; k<=cptcovprod;k++) |
for (k=1; k<=cptcovprod;k++) |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]]; |
|
|
Line 4520 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 4541 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
fprintf(ficgp," exp(p%d+p%d*x",i,i+1); |
ij=1;/* To be checked else nbcode[0][0] wrong */ |
ij=1;/* To be checked else nbcode[0][0] wrong */ |
for(j=3; j <=ncovmodel; j++) { |
for(j=3; j <=ncovmodel; j++) { |
/* if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { /\* Bug valgrind *\/ */ |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { /* Bug valgrind */ |
/* /\*fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]);*\/ */ |
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
/* ij++; */ |
ij++; |
/* } */ |
} |
/* else */ |
else |
fprintf(ficgp,"+p%d*%d",i+j-1,nbcode[Tvar[j-2]][codtab[jk][j-2]]); |
fprintf(ficgp,"+p%d*%d",i+j-1,nbcode[Tvar[j-2]][codtab[jk][j-2]]); |
} |
} |
fprintf(ficgp,")/(1"); |
fprintf(ficgp,")/(1"); |
Line 4533 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
Line 4554 plot [%.f:%.f] ", ageminpar, agemaxpar)
|
fprintf(ficgp,"+exp(p%d+p%d*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1); |
fprintf(ficgp,"+exp(p%d+p%d*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1); |
ij=1; |
ij=1; |
for(j=3; j <=ncovmodel; j++){ |
for(j=3; j <=ncovmodel; j++){ |
/* if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { */ |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) { |
/* fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); */ |
fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]); |
/* ij++; */ |
ij++; |
/* } */ |
} |
/* else */ |
else |
fprintf(ficgp,"+p%d*%d",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][j-2]]); |
fprintf(ficgp,"+p%d*%d",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][j-2]]); |
} |
} |
fprintf(ficgp,")"); |
fprintf(ficgp,")"); |
Line 5418 int decodemodel ( char model[], int last
|
Line 5439 int decodemodel ( char model[], int last
|
/* for (k=1; k<=cptcovn;k++) { */ |
/* for (k=1; k<=cptcovn;k++) { */ |
/* cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; */ |
/* cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]]; */ |
/* } */ |
/* } */ |
/* for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2]; */ |
/* for (k=1; k<=cptcovage;k++) cov[2+Tage[k]]=nbcode[Tvar[Tage[k]]][codtab[ij][Tvar[Tage[k]]]]*cov[2]; */ |
/* |
/* |
* Treating invertedly V2+V1+V3*age+V2*V4 is as if written V2*V4 +V3*age + V1 + V2 */ |
* Treating invertedly V2+V1+V3*age+V2*V4 is as if written V2*V4 +V3*age + V1 + V2 */ |
for(k=cptcovt; k>=1;k--) /**< Number of covariates */ |
for(k=cptcovt; k>=1;k--) /**< Number of covariates */ |
Line 5438 int decodemodel ( char model[], int last
|
Line 5459 int decodemodel ( char model[], int last
|
cutl(stre,strb,strd,'V'); /* strd=V3(input): stre="3" */ |
cutl(stre,strb,strd,'V'); /* strd=V3(input): stre="3" */ |
Tvar[k]=atoi(stre); /* V2+V1+V4+V3*age Tvar[4]=3 ; V1+V2*age Tvar[2]=2 */ |
Tvar[k]=atoi(stre); /* V2+V1+V4+V3*age Tvar[4]=3 ; V1+V2*age Tvar[2]=2 */ |
cptcovage++; /* Sums the number of covariates which include age as a product */ |
cptcovage++; /* Sums the number of covariates which include age as a product */ |
Tage[cptcovage]=k; /* Tage[1] = 4 */ |
Tage[cptcovage]=k; /* Tvar[4]=3, Tage[1] = 4 or V1+V1*age Tvar[2]=1, Tage[1]=2 */ |
/*printf("stre=%s ", stre);*/ |
/*printf("stre=%s ", stre);*/ |
} else if (strcmp(strd,"age")==0) { /* or age*Vn */ |
} else if (strcmp(strd,"age")==0) { /* or age*Vn */ |
cptcovprod--; |
cptcovprod--; |
Line 5638 BOOL IsWow64()
|
Line 5659 BOOL IsWow64()
|
void syscompilerinfo() |
void syscompilerinfo() |
{ |
{ |
/* #include "syscompilerinfo.h"*/ |
/* #include "syscompilerinfo.h"*/ |
|
/* command line Intel compiler 32bit windows, XP compatible:*/ |
|
/* /GS /W3 /Gy |
|
/Zc:wchar_t /Zi /O2 /Fd"Release\vc120.pdb" /D "WIN32" /D "NDEBUG" /D |
|
"_CONSOLE" /D "_LIB" /D "_USING_V110_SDK71_" /D "_UNICODE" /D |
|
"UNICODE" /Qipo /Zc:forScope /Gd /Oi /MT /Fa"Release\" /EHsc /nologo |
|
/Fo"Release\" /Qprof-dir "Release\" /Fp"Release\IMaCh.pch" |
|
*/ |
|
/* 64 bits */ |
|
/* |
|
/GS /W3 /Gy |
|
/Zc:wchar_t /Zi /O2 /Fd"x64\Release\vc120.pdb" /D "WIN32" /D "NDEBUG" |
|
/D "_CONSOLE" /D "_LIB" /D "_UNICODE" /D "UNICODE" /Qipo /Zc:forScope |
|
/Oi /MD /Fa"x64\Release\" /EHsc /nologo /Fo"x64\Release\" /Qprof-dir |
|
"x64\Release\" /Fp"x64\Release\IMaCh.pch" */ |
|
/* Optimization are useless and O3 is slower than O2 */ |
|
/* |
|
/GS /W3 /Gy /Zc:wchar_t /Zi /O3 /Fd"x64\Release\vc120.pdb" /D "WIN32" |
|
/D "NDEBUG" /D "_CONSOLE" /D "_LIB" /D "_UNICODE" /D "UNICODE" /Qipo |
|
/Zc:forScope /Oi /MD /Fa"x64\Release\" /EHsc /nologo /Qparallel |
|
/Fo"x64\Release\" /Qprof-dir "x64\Release\" /Fp"x64\Release\IMaCh.pch" |
|
*/ |
|
/* Link is */ /* /OUT:"visual studio |
|
2013\Projects\IMaCh\Release\IMaCh.exe" /MANIFEST /NXCOMPAT |
|
/PDB:"visual studio |
|
2013\Projects\IMaCh\Release\IMaCh.pdb" /DYNAMICBASE |
|
"kernel32.lib" "user32.lib" "gdi32.lib" "winspool.lib" |
|
"comdlg32.lib" "advapi32.lib" "shell32.lib" "ole32.lib" |
|
"oleaut32.lib" "uuid.lib" "odbc32.lib" "odbccp32.lib" |
|
/MACHINE:X86 /OPT:REF /SAFESEH /INCREMENTAL:NO |
|
/SUBSYSTEM:CONSOLE",5.01" /MANIFESTUAC:"level='asInvoker' |
|
uiAccess='false'" |
|
/ManifestFile:"Release\IMaCh.exe.intermediate.manifest" /OPT:ICF |
|
/NOLOGO /TLBID:1 |
|
*/ |
#if defined __INTEL_COMPILER |
#if defined __INTEL_COMPILER |
#if defined(__GNUC__) |
#if defined(__GNUC__) |
struct utsname sysInfo; /* For Intel on Linux and OS/X */ |
struct utsname sysInfo; /* For Intel on Linux and OS/X */ |
Line 5827 int prevalence_limit(double *p, double *
|
Line 5881 int prevalence_limit(double *p, double *
|
} /* Age */ |
} /* Age */ |
/* was end of cptcod */ |
/* was end of cptcod */ |
} /* cptcov */ |
} /* cptcov */ |
|
return 0; |
} |
} |
|
|
int hPijx(double *p, int bage, int fage){ |
int hPijx(double *p, int bage, int fage){ |
Line 5896 int hPijx(double *p, int bage, int fage)
|
Line 5951 int hPijx(double *p, int bage, int fage)
|
} |
} |
/*}*/ |
/*}*/ |
} |
} |
|
return 0; |
} |
} |
|
|
|
|
Line 6006 int main(int argc, char *argv[])
|
Line 6062 int main(int argc, char *argv[])
|
|
|
nberr=0; /* Number of errors and warnings */ |
nberr=0; /* Number of errors and warnings */ |
nbwarn=0; |
nbwarn=0; |
|
#ifdef WIN32 |
|
_getcwd(pathcd, size); |
|
#else |
getcwd(pathcd, size); |
getcwd(pathcd, size); |
|
#endif |
|
|
printf("\n%s\n%s",version,fullversion); |
printf("\n%s\n%s",version,fullversion); |
if(argc <=1){ |
if(argc <=1){ |
Line 6042 int main(int argc, char *argv[])
|
Line 6102 int main(int argc, char *argv[])
|
/* Split argv[1]=pathtot, parameter file name to get path, optionfile, extension and name */ |
/* Split argv[1]=pathtot, parameter file name to get path, optionfile, extension and name */ |
split(pathtot,path,optionfile,optionfilext,optionfilefiname); |
split(pathtot,path,optionfile,optionfilext,optionfilefiname); |
printf("\npathtot=%s,\npath=%s,\noptionfile=%s \noptionfilext=%s \noptionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname); |
printf("\npathtot=%s,\npath=%s,\noptionfile=%s \noptionfilext=%s \noptionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname); |
|
#ifdef WIN32 |
|
_chdir(path); /* Can be a relative path */ |
|
if(_getcwd(pathcd,MAXLINE) > 0) /* So pathcd is the full path */ |
|
#else |
chdir(path); /* Can be a relative path */ |
chdir(path); /* Can be a relative path */ |
if(getcwd(pathcd,MAXLINE) > 0) /* So pathcd is the full path */ |
if (getcwd(pathcd, MAXLINE) > 0) /* So pathcd is the full path */ |
printf("Current directory %s!\n",pathcd); |
#endif |
|
printf("Current directory %s!\n",pathcd); |
strcpy(command,"mkdir "); |
strcpy(command,"mkdir "); |
strcat(command,optionfilefiname); |
strcat(command,optionfilefiname); |
if((outcmd=system(command)) != 0){ |
if((outcmd=system(command)) != 0){ |
Line 6059 int main(int argc, char *argv[])
|
Line 6124 int main(int argc, char *argv[])
|
|
|
/*-------- arguments in the command line --------*/ |
/*-------- arguments in the command line --------*/ |
|
|
/* Log file */ |
/* Main Log file */ |
strcat(filelog, optionfilefiname); |
strcat(filelog, optionfilefiname); |
strcat(filelog,".log"); /* */ |
strcat(filelog,".log"); /* */ |
if((ficlog=fopen(filelog,"w"))==NULL) { |
if((ficlog=fopen(filelog,"w"))==NULL) { |
Line 6088 int main(int argc, char *argv[])
|
Line 6153 int main(int argc, char *argv[])
|
strcat(fileres, optionfilefiname); |
strcat(fileres, optionfilefiname); |
strcat(fileres,".txt"); /* Other files have txt extension */ |
strcat(fileres,".txt"); /* Other files have txt extension */ |
|
|
/*---------arguments file --------*/ |
/* Main ---------arguments file --------*/ |
|
|
if((ficpar=fopen(optionfile,"r"))==NULL) { |
if((ficpar=fopen(optionfile,"r"))==NULL) { |
printf("Problem with optionfile '%s' with errno='%s'\n",optionfile,strerror(errno)); |
printf("Problem with optionfile '%s' with errno='%s'\n",optionfile,strerror(errno)); |
Line 6123 int main(int argc, char *argv[])
|
Line 6188 int main(int argc, char *argv[])
|
|
|
fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d model=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncovcol, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model); |
fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d model=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncovcol, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model); |
numlinepar++; |
numlinepar++; |
printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncovcol, nlstate,ndeath, maxwav, mle, weightopt,model); |
/* printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncovcol, nlstate,ndeath, maxwav, mle, weightopt,model); */ |
|
printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\n",title, datafile, lastobs, firstpass,lastpass); |
|
/* |
|
|
|
|
|
|
|
*/ |
|
printf("\nftol=%e \n", ftol); |
|
printf("stepm=%d \n", stepm); |
|
printf("ncovcol=%d nlstate=%d \n", ncovcol, nlstate); |
|
printf("ndeath=%d maxwav=%d mle=%d weight=%d\n", ndeath, maxwav, mle, weightopt); |
|
printf("model=%s\n",model); |
fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficlog,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficlog,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fflush(ficlog); |
fflush(ficlog); |
Line 6171 int main(int argc, char *argv[])
|
Line 6247 int main(int argc, char *argv[])
|
goto end; |
goto end; |
exit(0); |
exit(0); |
} |
} |
else if(mle==-3) { |
else if(mle==-3) { /* Main Wizard */ |
prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
printf(" You choose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
printf(" You choose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
fprintf(ficlog," You choose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
fprintf(ficlog," You choose mle=-3, look at file %s for a template of covariance matrix \n",filereso); |
Line 6331 run imach with mle=-1 to get a correct t
|
Line 6407 run imach with mle=-1 to get a correct t
|
fprintf(ficres,"#%s\n",version); |
fprintf(ficres,"#%s\n",version); |
} /* End of mle != -3 */ |
} /* End of mle != -3 */ |
|
|
|
/* Main data |
|
*/ |
n= lastobs; |
n= lastobs; |
num=lvector(1,n); |
num=lvector(1,n); |
moisnais=vector(1,n); |
moisnais=vector(1,n); |
Line 6382 run imach with mle=-1 to get a correct t
|
Line 6459 run imach with mle=-1 to get a correct t
|
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
Tage[1=V3*age]= 4; Tage[2=age*V4] = 3 |
*/ |
*/ |
|
|
|
/* Main decodemodel */ |
|
|
if(decodemodel(model, lastobs) == 1) |
if(decodemodel(model, lastobs) == 1) |
goto end; |
goto end; |
|
|
Line 6427 run imach with mle=-1 to get a correct t
|
Line 6506 run imach with mle=-1 to get a correct t
|
Ndum =ivector(-1,NCOVMAX); |
Ndum =ivector(-1,NCOVMAX); |
if (ncovmodel > 2) |
if (ncovmodel > 2) |
tricode(Tvar,nbcode,imx, Ndum); /**< Fills nbcode[Tvar[j]][l]; */ |
tricode(Tvar,nbcode,imx, Ndum); /**< Fills nbcode[Tvar[j]][l]; */ |
|
/* Nbcode gives the value of the lth modality of jth covariate, in |
|
V2+V1*age, there are 3 covariates Tvar[2]=1 (V1).*/ |
|
/* 1 to ncodemax[j] is the maximum value of this jth covariate */ |
|
|
codtab=imatrix(1,100,1,10); /* codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) */ |
codtab=imatrix(1,100,1,10); /* codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) */ |
/*printf(" codtab[1,1],codtab[100,10]=%d,%d\n", codtab[1][1],codtab[100][10]);*/ |
/*printf(" codtab[1,1],codtab[100,10]=%d,%d\n", codtab[1][1],codtab[100][10]);*/ |
|
/* codtab gives the value 1 or 2 of the hth combination of k covariates (1 or 2).*/ |
h=0; |
h=0; |
|
|
|
|
Line 6446 run imach with mle=-1 to get a correct t
|
Line 6529 run imach with mle=-1 to get a correct t
|
if (h>m) |
if (h>m) |
h=1; |
h=1; |
/**< codtab(h,k) k = codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) + 1 |
/**< codtab(h,k) k = codtab[h,k]=( (h-1) - mod(k-1,2**(k-1) )/2**(k-1) + 1 |
* h 1 2 3 4 |
* For k=4 covariates, h goes from 1 to 2**k |
|
* codtabm(h,k)= 1 & (h-1) >> (k-1) ; |
|
* h\k 1 2 3 4 |
*______________________________ |
*______________________________ |
* 1 i=1 1 i=1 1 i=1 1 i=1 1 |
* 1 i=1 1 i=1 1 i=1 1 i=1 1 |
* 2 2 1 1 1 |
* 2 2 1 1 1 |
Line 6466 run imach with mle=-1 to get a correct t
|
Line 6551 run imach with mle=-1 to get a correct t
|
* 16 2 2 2 1 |
* 16 2 2 2 1 |
*/ |
*/ |
codtab[h][k]=j; |
codtab[h][k]=j; |
|
/* codtab[12][3]=1; */ |
/*codtab[h][Tvar[k]]=j;*/ |
/*codtab[h][Tvar[k]]=j;*/ |
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
printf("h=%d k=%d j=%d codtab[h][k]=%d Tvar[k]=%d codtab[h][Tvar[k]]=%d \n",h, k,j,codtab[h][k],Tvar[k],codtab[h][Tvar[k]]); |
} |
} |
Line 6486 run imach with mle=-1 to get a correct t
|
Line 6572 run imach with mle=-1 to get a correct t
|
|
|
|
|
|
|
/*------------ gnuplot -------------*/ |
/* Initialisation of ----------- gnuplot -------------*/ |
strcpy(optionfilegnuplot,optionfilefiname); |
strcpy(optionfilegnuplot,optionfilefiname); |
if(mle==-3) |
if(mle==-3) |
strcat(optionfilegnuplot,"-mort"); |
strcat(optionfilegnuplot,"-mort"); |
Line 6502 run imach with mle=-1 to get a correct t
|
Line 6588 run imach with mle=-1 to get a correct t
|
fprintf(ficgp,"set datafile missing 'NaNq'\n"); |
fprintf(ficgp,"set datafile missing 'NaNq'\n"); |
} |
} |
/* fclose(ficgp);*/ |
/* fclose(ficgp);*/ |
/*--------- index.htm --------*/ |
|
|
|
|
/* Initialisation of --------- index.htm --------*/ |
|
|
strcpy(optionfilehtm,optionfilefiname); /* Main html file */ |
strcpy(optionfilehtm,optionfilefiname); /* Main html file */ |
if(mle==-3) |
if(mle==-3) |
Line 6544 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 6632 Title=%s <br>Datafile=%s Firstpass=%d La
|
|
|
strcpy(pathr,path); |
strcpy(pathr,path); |
strcat(pathr,optionfilefiname); |
strcat(pathr,optionfilefiname); |
|
#ifdef WIN32 |
|
_chdir(optionfilefiname); /* Move to directory named optionfile */ |
|
#else |
chdir(optionfilefiname); /* Move to directory named optionfile */ |
chdir(optionfilefiname); /* Move to directory named optionfile */ |
|
#endif |
|
|
|
|
/* Calculates basic frequencies. Computes observed prevalence at single age |
/* Calculates basic frequencies. Computes observed prevalence at single age |
and prints on file fileres'p'. */ |
and prints on file fileres'p'. */ |
Line 6567 Interval (in months) between two waves:
|
Line 6660 Interval (in months) between two waves:
|
p=param[1][1]; /* *(*(*(param +1)+1)+0) */ |
p=param[1][1]; /* *(*(*(param +1)+1)+0) */ |
|
|
globpr=0; /* To get the number ipmx of contributions and the sum of weights*/ |
globpr=0; /* To get the number ipmx of contributions and the sum of weights*/ |
|
/* For mortality only */ |
if (mle==-3){ |
if (mle==-3){ |
ximort=matrix(1,NDIM,1,NDIM); |
ximort=matrix(1,NDIM,1,NDIM); |
/* ximort=gsl_matrix_alloc(1,NDIM,1,NDIM); */ |
/* ximort=gsl_matrix_alloc(1,NDIM,1,NDIM); */ |
cens=ivector(1,n); |
cens=ivector(1,n); |
ageexmed=vector(1,n); |
ageexmed=vector(1,n); |
agecens=vector(1,n); |
agecens=vector(1,n); |
Line 6660 Interval (in months) between two waves:
|
Line 6753 Interval (in months) between two waves:
|
|
|
/* Initialize method and iterate */ |
/* Initialize method and iterate */ |
/* p[1]=0.0268; p[NDIM]=0.083; */ |
/* p[1]=0.0268; p[NDIM]=0.083; */ |
/* gsl_vector_set(x, 0, 0.0268); */ |
/* gsl_vector_set(x, 0, 0.0268); */ |
/* gsl_vector_set(x, 1, 0.083); */ |
/* gsl_vector_set(x, 1, 0.083); */ |
gsl_vector_set(x, 0, p[1]); |
gsl_vector_set(x, 0, p[1]); |
gsl_vector_set(x, 1, p[2]); |
gsl_vector_set(x, 1, p[2]); |
|
|
Line 6778 Interval (in months) between two waves:
|
Line 6871 Interval (in months) between two waves:
|
free_ivector(dcwave,1,n); |
free_ivector(dcwave,1,n); |
free_matrix(ximort,1,NDIM,1,NDIM); |
free_matrix(ximort,1,NDIM,1,NDIM); |
#endif |
#endif |
} /* Endof if mle==-3 */ |
} /* Endof if mle==-3 mortality only */ |
|
/* Standard maximisation */ |
else{ /* For mle >=1 */ |
else{ /* For mle >=1 */ |
globpr=0;/* debug */ |
globpr=0;/* debug */ |
|
/* Computes likelihood for initial parameters */ |
likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */ |
likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */ |
printf("First Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw); |
printf("First Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw); |
for (k=1; k<=npar;k++) |
for (k=1; k<=npar;k++) |
printf(" %d %8.5f",k,p[k]); |
printf(" %d %8.5f",k,p[k]); |
printf("\n"); |
printf("\n"); |
globpr=1; /* to print the contributions */ |
globpr=1; /* again, to print the contributions */ |
likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */ |
likelione(ficres, p, npar, nlstate, &globpr, &ipmx, &sw, &fretone, funcone); /* Prints the contributions to the likelihood */ |
printf("Second Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw); |
printf("Second Likeli=%12.6f ipmx=%ld sw=%12.6f",fretone,ipmx,sw); |
for (k=1; k<=npar;k++) |
for (k=1; k<=npar;k++) |
printf(" %d %8.5f",k,p[k]); |
printf(" %d %8.5f",k,p[k]); |
printf("\n"); |
printf("\n"); |
if(mle>=1){ /* Could be 1 or 2 */ |
if(mle>=1){ /* Could be 1 or 2, Real Maximisation */ |
mlikeli(ficres,p, npar, ncovmodel, nlstate, ftol, func); |
mlikeli(ficres,p, npar, ncovmodel, nlstate, ftol, func); |
} |
} |
|
|
Line 6954 Interval (in months) between two waves:
|
Line 7048 Interval (in months) between two waves:
|
fprintf(ficres,"# agemin agemax for life expectancy, bage fage (if mle==0 ie no data nor Max likelihood).\n"); |
fprintf(ficres,"# agemin agemax for life expectancy, bage fage (if mle==0 ie no data nor Max likelihood).\n"); |
fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d\n",ageminpar,agemaxpar,bage,fage, estepm); |
fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d\n",ageminpar,agemaxpar,bage,fage, estepm); |
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d\n",ageminpar,agemaxpar,bage,fage, estepm); |
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f estepm=%d\n",ageminpar,agemaxpar,bage,fage, estepm); |
|
|
|
/* Other stuffs, more or less useful */ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
while((c=getc(ficpar))=='#' && c!= EOF){ |
ungetc(c,ficpar); |
ungetc(c,ficpar); |
fgets(line, MAXLINE, ficpar); |
fgets(line, MAXLINE, ficpar); |
Line 7027 Interval (in months) between two waves:
|
Line 7122 Interval (in months) between two waves:
|
fclose(ficres); |
fclose(ficres); |
|
|
|
|
|
/* Other results (useful)*/ |
|
|
|
|
/*--------------- Prevalence limit (period or stable prevalence) --------------*/ |
/*--------------- Prevalence limit (period or stable prevalence) --------------*/ |
/*#include "prevlim.h"*/ /* Use ficrespl, ficlog */ |
/*#include "prevlim.h"*/ /* Use ficrespl, ficlog */ |
prlim=matrix(1,nlstate,1,nlstate); |
prlim=matrix(1,nlstate,1,nlstate); |
Line 7066 Interval (in months) between two waves:
|
Line 7164 Interval (in months) between two waves:
|
/* fprintf(ficlog,"Warning %d!! You can only forecast the prevalences if the optimization\n has been performed with stepm = 1 (month) instead of %d or model=. instead of '%s'\n", erreur, stepm, model); */ |
/* fprintf(ficlog,"Warning %d!! You can only forecast the prevalences if the optimization\n has been performed with stepm = 1 (month) instead of %d or model=. instead of '%s'\n", erreur, stepm, model); */ |
/* } */ |
/* } */ |
} |
} |
|
|
|
/* ------ Other prevalence ratios------------ */ |
|
|
/* Computes prevalence between agemin (i.e minimal age computed) and no more ageminpar */ |
/* Computes prevalence between agemin (i.e minimal age computed) and no more ageminpar */ |
|
|
Line 7341 Interval (in months) between two waves:
|
Line 7440 Interval (in months) between two waves:
|
|
|
|
|
printf("Before Current directory %s!\n",pathcd); |
printf("Before Current directory %s!\n",pathcd); |
|
#ifdef WIN32 |
|
if (_chdir(pathcd) != 0) |
|
printf("Can't move to directory %s!\n",path); |
|
if(_getcwd(pathcd,MAXLINE) > 0) |
|
#else |
if(chdir(pathcd) != 0) |
if(chdir(pathcd) != 0) |
printf("Can't move to directory %s!\n",path); |
printf("Can't move to directory %s!\n", path); |
if(getcwd(pathcd,MAXLINE) > 0) |
if (getcwd(pathcd, MAXLINE) > 0) |
|
#endif |
printf("Current directory %s!\n",pathcd); |
printf("Current directory %s!\n",pathcd); |
/*strcat(plotcmd,CHARSEPARATOR);*/ |
/*strcat(plotcmd,CHARSEPARATOR);*/ |
sprintf(plotcmd,"gnuplot"); |
sprintf(plotcmd,"gnuplot"); |