version 1.187, 2015/04/29 09:11:15
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version 1.191, 2015/07/14 10:00:33
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.191 2015/07/14 10:00:33 brouard |
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Summary: Some fixes |
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Revision 1.190 2015/05/05 08:51:13 brouard |
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Summary: Adding digits in output parameters (7 digits instead of 6) |
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Fix 1+age+. |
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Revision 1.189 2015/04/30 14:45:16 brouard |
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Summary: 0.98q2 |
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Revision 1.188 2015/04/30 08:27:53 brouard |
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*** empty log message *** |
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Revision 1.187 2015/04/29 09:11:15 brouard |
Revision 1.187 2015/04/29 09:11:15 brouard |
*** empty log message *** |
*** empty log message *** |
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Line 678 typedef struct {
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Line 692 typedef struct {
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/* $Id$ */ |
/* $Id$ */ |
/* $State$ */ |
/* $State$ */ |
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char version[]="Imach version 0.98q1, April 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char version[]="Imach version 0.98q2, April 2015,INED-EUROREVES-Institut de longevite-Japan Society for the Promotion of Science (Grant-in-Aid for Scientific Research 25293121), Intel Software 2015"; |
char fullversion[]="$Revision$ $Date$"; |
char fullversion[]="$Revision$ $Date$"; |
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
Line 1439 values at the three points, fa, fb , and
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Line 1453 values at the three points, fa, fb , and
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#endif |
#endif |
#ifdef MNBRAKORIGINAL |
#ifdef MNBRAKORIGINAL |
#else |
#else |
if (fu > *fc) { |
/* if (fu > *fc) { */ |
#ifdef DEBUG |
/* #ifdef DEBUG */ |
printf("mnbrak4 fu > fc \n"); |
/* printf("mnbrak4 fu > fc \n"); */ |
fprintf(ficlog, "mnbrak4 fu > fc\n"); |
/* fprintf(ficlog, "mnbrak4 fu > fc\n"); */ |
#endif |
/* #endif */ |
/* SHFT(u,*cx,*cx,u) /\* ie a=c, c=u and u=c; in that case, next SHFT(a,b,c,u) will give a=b=b, b=c=u, c=u=c and *\/ */ |
/* /\* SHFT(u,*cx,*cx,u) /\\* ie a=c, c=u and u=c; in that case, next SHFT(a,b,c,u) will give a=b=b, b=c=u, c=u=c and *\\/ *\/ */ |
/* SHFT(*fa,*fc,fu,*fc) /\* (b, u, c) is a bracket while test fb > fc will be fu > fc will exit *\/ */ |
/* /\* SHFT(*fa,*fc,fu,*fc) /\\* (b, u, c) is a bracket while test fb > fc will be fu > fc will exit *\\/ *\/ */ |
dum=u; /* Shifting c and u */ |
/* dum=u; /\* Shifting c and u *\/ */ |
u = *cx; |
/* u = *cx; */ |
*cx = dum; |
/* *cx = dum; */ |
dum = fu; |
/* dum = fu; */ |
fu = *fc; |
/* fu = *fc; */ |
*fc =dum; |
/* *fc =dum; */ |
} else { /* end */ |
/* } else { /\* end *\/ */ |
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/* #ifdef DEBUG */ |
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/* printf("mnbrak3 fu < fc \n"); */ |
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/* fprintf(ficlog, "mnbrak3 fu < fc\n"); */ |
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/* #endif */ |
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/* dum=u; /\* Shifting c and u *\/ */ |
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/* u = *cx; */ |
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/* *cx = dum; */ |
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/* dum = fu; */ |
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/* fu = *fc; */ |
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/* *fc =dum; */ |
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/* } */ |
#ifdef DEBUG |
#ifdef DEBUG |
printf("mnbrak3 fu < fc \n"); |
printf("mnbrak34 fu < or >= fc \n"); |
fprintf(ficlog, "mnbrak3 fu < fc\n"); |
fprintf(ficlog, "mnbrak34 fu < fc\n"); |
#endif |
#endif |
dum=u; /* Shifting c and u */ |
dum=u; /* Shifting c and u */ |
u = *cx; |
u = *cx; |
*cx = dum; |
*cx = dum; |
dum = fu; |
dum = fu; |
fu = *fc; |
fu = *fc; |
*fc =dum; |
*fc =dum; |
} |
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#endif |
#endif |
} else if ((*cx-u)*(u-ulim) > 0.0) { /* u is after c but before ulim */ |
} else if ((*cx-u)*(u-ulim) > 0.0) { /* u is after c but before ulim */ |
#ifdef DEBUG |
#ifdef DEBUG |
Line 1554 void linmin(double p[], double xi[], int
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Line 1578 void linmin(double p[], double xi[], int
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} |
} |
}while(fx != fx); |
}while(fx != fx); |
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#ifdef DEBUGLINMIN |
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printf("\nLinmin after mnbrak: ax=%12.7f xx=%12.7f bx=%12.7f fa=%12.2f fx=%12.2f fb=%12.2f\n", ax,xx,bx,fa,fx,fb); |
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#endif |
*fret=brent(ax,xx,bx,f1dim,TOL,&xmin); /* Giving a bracketting triplet (ax, xx, bx), find a minimum, xmin, according to f1dim, *fret(xmin),*/ |
*fret=brent(ax,xx,bx,f1dim,TOL,&xmin); /* Giving a bracketting triplet (ax, xx, bx), find a minimum, xmin, according to f1dim, *fret(xmin),*/ |
/* fa = f(p[j] + ax * xi[j]), fx = f(p[j] + xx * xi[j]), fb = f(p[j] + bx * xi[j]) */ |
/* fa = f(p[j] + ax * xi[j]), fx = f(p[j] + xx * xi[j]), fb = f(p[j] + bx * xi[j]) */ |
/* fmin = f(p[j] + xmin * xi[j]) */ |
/* fmin = f(p[j] + xmin * xi[j]) */ |
Line 1563 void linmin(double p[], double xi[], int
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Line 1590 void linmin(double p[], double xi[], int
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printf("retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); |
printf("retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); |
fprintf(ficlog,"retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); |
fprintf(ficlog,"retour brent fret=%.12e xmin=%.12e\n",*fret,xmin); |
#endif |
#endif |
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#ifdef DEBUGLINMIN |
printf("linmin end "); |
printf("linmin end "); |
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#endif |
for (j=1;j<=n;j++) { |
for (j=1;j<=n;j++) { |
printf(" before xi[%d]=%12.8f", j,xi[j]); |
/* printf(" before xi[%d]=%12.8f", j,xi[j]); */ |
xi[j] *= xmin; /* xi rescaled by xmin: if xmin=-1.237 and xi=(1,0,...,0) xi=(-1.237,0,...,0) */ |
xi[j] *= xmin; /* xi rescaled by xmin: if xmin=-1.237 and xi=(1,0,...,0) xi=(-1.237,0,...,0) */ |
if(xxs <1.0) |
/* if(xxs <1.0) */ |
printf(" after xi[%d]=%12.8f, xmin=%12.8f, ax=%12.8f, xx=%12.8f, bx=%12.8f, xxs=%12.8f", j,xi[j], xmin, ax, xx, bx,xxs ); |
/* printf(" after xi[%d]=%12.8f, xmin=%12.8f, ax=%12.8f, xx=%12.8f, bx=%12.8f, xxs=%12.8f", j,xi[j], xmin, ax, xx, bx,xxs ); */ |
p[j] += xi[j]; /* Parameters values are updated accordingly */ |
p[j] += xi[j]; /* Parameters values are updated accordingly */ |
} |
} |
printf("\n"); |
/* printf("\n"); */ |
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#ifdef DEBUGLINMIN |
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printf("Comparing last *frec(xmin=%12.8f)=%12.8f from Brent and frec(0.)=%12.8f \n", xmin, *fret, (*func)(p)); |
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for (j=1;j<=n;j++) { |
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printf(" xi[%d]= %12.7f p[%d]= %12.7f",j,xi[j],j,p[j]); |
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if(j % ncovmodel == 0) |
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printf("\n"); |
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} |
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#endif |
free_vector(xicom,1,n); |
free_vector(xicom,1,n); |
free_vector(pcom,1,n); |
free_vector(pcom,1,n); |
} |
} |
Line 1653 void powell(double p[], double **xi, int
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Line 1690 void powell(double p[], double **xi, int
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#endif |
#endif |
printf("%d",i);fflush(stdout); /* print direction (parameter) i */ |
printf("%d",i);fflush(stdout); /* print direction (parameter) i */ |
fprintf(ficlog,"%d",i);fflush(ficlog); |
fprintf(ficlog,"%d",i);fflush(ficlog); |
linmin(p,xit,n,fret,func); /* Point p[n]. xit[n] has been loaded for direction i as input. Outputs are fret(new point p) p is updated and xit rescaled */ |
linmin(p,xit,n,fret,func); /* Point p[n]. xit[n] has been loaded for direction i as input.*/ |
if (fabs(fptt-(*fret)) > del) { /* We are keeping the max gain on each of the n directions |
/* Outputs are fret(new point p) p is updated and xit rescaled */ |
because that direction will be replaced unless the gain del is small |
if (fabs(fptt-(*fret)) > del) { /* We are keeping the max gain on each of the n directions */ |
in comparison with the 'probable' gain, mu^2, with the last average direction. |
/* because that direction will be replaced unless the gain del is small */ |
Unless the n directions are conjugate some gain in the determinant may be obtained |
/* in comparison with the 'probable' gain, mu^2, with the last average direction. */ |
with the new direction. |
/* Unless the n directions are conjugate some gain in the determinant may be obtained */ |
*/ |
/* with the new direction. */ |
del=fabs(fptt-(*fret)); |
del=fabs(fptt-(*fret)); |
ibig=i; |
ibig=i; |
} |
} |
Line 1680 void powell(double p[], double **xi, int
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Line 1717 void powell(double p[], double **xi, int
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#endif |
#endif |
} /* end loop on each direction i */ |
} /* end loop on each direction i */ |
/* Convergence test will use last linmin estimation (fret) and compare former iteration (fp) */ |
/* Convergence test will use last linmin estimation (fret) and compare former iteration (fp) */ |
/* But p and xit have been updated at the end of linmin and do not produce *fret any more! */ |
/* But p and xit have been updated at the end of linmin, *fret corresponds to new p, xit */ |
/* New value of last point Pn is not computed, P(n-1) */ |
/* New value of last point Pn is not computed, P(n-1) */ |
if (2.0*fabs(fp-(*fret)) <= ftol*(fabs(fp)+fabs(*fret))) { /* Did we reach enough precision? */ |
if (2.0*fabs(fp-(*fret)) <= ftol*(fabs(fp)+fabs(*fret))) { /* Did we reach enough precision? */ |
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/* We could compare with a chi^2. chisquare(0.95,ddl=1)=3.84 */ |
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/* By adding age*age in a model, the new -2LL should be lower and the difference follows a */ |
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/* a chisquare statistics with 1 degree. To be significant at the 95% level, it should have */ |
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/* decreased of more than 3.84 */ |
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/* By adding age*age and V1*age the gain (-2LL) should be more than 5.99 (ddl=2) */ |
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/* By using V1+V2+V3, the gain should be 7.82, compared with basic 1+age. */ |
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/* By adding 10 parameters more the gain should be 18.31 */ |
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/* Starting the program with initial values given by a former maximization will simply change */ |
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/* the scales of the directions and the directions, because the are reset to canonical directions */ |
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/* Thus the first calls to linmin will give new points and better maximizations until fp-(*fret) is */ |
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/* under the tolerance value. If the tolerance is very small 1.e-9, it could last long. */ |
#ifdef DEBUG |
#ifdef DEBUG |
int k[2],l; |
int k[2],l; |
k[0]=1; |
k[0]=1; |
Line 1756 void powell(double p[], double **xi, int
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Line 1805 void powell(double p[], double **xi, int
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} |
} |
if (directest < 0.0) { /* Then we use it for new direction */ |
if (directest < 0.0) { /* Then we use it for new direction */ |
#endif |
#endif |
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#ifdef DEBUGLINMIN |
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printf("Before linmin in direction P%d-P0\n",n); |
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for (j=1;j<=n;j++) { |
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printf("Before xit[%d]= %12.7f p[%d]= %12.7f",j,xit[j],j,p[j]); |
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if(j % ncovmodel == 0) |
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printf("\n"); |
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} |
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#endif |
linmin(p,xit,n,fret,func); /* computes minimum on the extrapolated direction: changes p and rescales xit.*/ |
linmin(p,xit,n,fret,func); /* computes minimum on the extrapolated direction: changes p and rescales xit.*/ |
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#ifdef DEBUGLINMIN |
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for (j=1;j<=n;j++) { |
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printf("After xit[%d]= %12.7f p[%d]= %12.7f",j,xit[j],j,p[j]); |
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if(j % ncovmodel == 0) |
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printf("\n"); |
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} |
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#endif |
for (j=1;j<=n;j++) { |
for (j=1;j<=n;j++) { |
xi[j][ibig]=xi[j][n]; /* Replace direction with biggest decrease by last direction n */ |
xi[j][ibig]=xi[j][n]; /* Replace direction with biggest decrease by last direction n */ |
xi[j][n]=xit[j]; /* and this nth direction by the by the average p_0 p_n */ |
xi[j][n]=xit[j]; /* and this nth direction by the by the average p_0 p_n */ |
Line 5841 BOOL IsWow64()
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Line 5905 BOOL IsWow64()
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} |
} |
#endif |
#endif |
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void syscompilerinfo() |
void syscompilerinfo(int logged) |
{ |
{ |
/* #include "syscompilerinfo.h"*/ |
/* #include "syscompilerinfo.h"*/ |
/* command line Intel compiler 32bit windows, XP compatible:*/ |
/* command line Intel compiler 32bit windows, XP compatible:*/ |
Line 5890 void syscompilerinfo()
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Line 5954 void syscompilerinfo()
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int cross = CROSS; |
int cross = CROSS; |
if (cross){ |
if (cross){ |
printf("Cross-"); |
printf("Cross-"); |
fprintf(ficlog, "Cross-"); |
if(logged) fprintf(ficlog, "Cross-"); |
} |
} |
#endif |
#endif |
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#include <stdint.h> |
#include <stdint.h> |
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printf("Compiled with:");fprintf(ficlog,"Compiled with:"); |
printf("Compiled with:");if(logged)fprintf(ficlog,"Compiled with:"); |
#if defined(__clang__) |
#if defined(__clang__) |
printf(" Clang/LLVM");fprintf(ficlog," Clang/LLVM"); /* Clang/LLVM. ---------------------------------------------- */ |
printf(" Clang/LLVM");if(logged)fprintf(ficlog," Clang/LLVM"); /* Clang/LLVM. ---------------------------------------------- */ |
#endif |
#endif |
#if defined(__ICC) || defined(__INTEL_COMPILER) |
#if defined(__ICC) || defined(__INTEL_COMPILER) |
printf(" Intel ICC/ICPC");fprintf(ficlog," Intel ICC/ICPC");/* Intel ICC/ICPC. ------------------------------------------ */ |
printf(" Intel ICC/ICPC");if(logged)fprintf(ficlog," Intel ICC/ICPC");/* Intel ICC/ICPC. ------------------------------------------ */ |
#endif |
#endif |
#if defined(__GNUC__) || defined(__GNUG__) |
#if defined(__GNUC__) || defined(__GNUG__) |
printf(" GNU GCC/G++");fprintf(ficlog," GNU GCC/G++");/* GNU GCC/G++. --------------------------------------------- */ |
printf(" GNU GCC/G++");if(logged)fprintf(ficlog," GNU GCC/G++");/* GNU GCC/G++. --------------------------------------------- */ |
#endif |
#endif |
#if defined(__HP_cc) || defined(__HP_aCC) |
#if defined(__HP_cc) || defined(__HP_aCC) |
printf(" Hewlett-Packard C/aC++");fprintf(fcilog," Hewlett-Packard C/aC++"); /* Hewlett-Packard C/aC++. ---------------------------------- */ |
printf(" Hewlett-Packard C/aC++");if(logged)fprintf(fcilog," Hewlett-Packard C/aC++"); /* Hewlett-Packard C/aC++. ---------------------------------- */ |
#endif |
#endif |
#if defined(__IBMC__) || defined(__IBMCPP__) |
#if defined(__IBMC__) || defined(__IBMCPP__) |
printf(" IBM XL C/C++"); fprintf(ficlog," IBM XL C/C++");/* IBM XL C/C++. -------------------------------------------- */ |
printf(" IBM XL C/C++"); if(logged) fprintf(ficlog," IBM XL C/C++");/* IBM XL C/C++. -------------------------------------------- */ |
#endif |
#endif |
#if defined(_MSC_VER) |
#if defined(_MSC_VER) |
printf(" Microsoft Visual Studio");fprintf(ficlog," Microsoft Visual Studio");/* Microsoft Visual Studio. --------------------------------- */ |
printf(" Microsoft Visual Studio");if(logged)fprintf(ficlog," Microsoft Visual Studio");/* Microsoft Visual Studio. --------------------------------- */ |
#endif |
#endif |
#if defined(__PGI) |
#if defined(__PGI) |
printf(" Portland Group PGCC/PGCPP");fprintf(ficlog," Portland Group PGCC/PGCPP");/* Portland Group PGCC/PGCPP. ------------------------------- */ |
printf(" Portland Group PGCC/PGCPP");if(logged) fprintf(ficlog," Portland Group PGCC/PGCPP");/* Portland Group PGCC/PGCPP. ------------------------------- */ |
#endif |
#endif |
#if defined(__SUNPRO_C) || defined(__SUNPRO_CC) |
#if defined(__SUNPRO_C) || defined(__SUNPRO_CC) |
printf(" Oracle Solaris Studio");fprintf(ficlog," Oracle Solaris Studio\n");/* Oracle Solaris Studio. ----------------------------------- */ |
printf(" Oracle Solaris Studio");if(logged)fprintf(ficlog," Oracle Solaris Studio\n");/* Oracle Solaris Studio. ----------------------------------- */ |
#endif |
#endif |
printf(" for ");fprintf(ficlog," for "); |
printf(" for "); if (logged) fprintf(ficlog, " for "); |
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// http://stackoverflow.com/questions/4605842/how-to-identify-platform-compiler-from-preprocessor-macros |
// http://stackoverflow.com/questions/4605842/how-to-identify-platform-compiler-from-preprocessor-macros |
#ifdef _WIN32 // note the underscore: without it, it's not msdn official! |
#ifdef _WIN32 // note the underscore: without it, it's not msdn official! |
// Windows (x64 and x86) |
// Windows (x64 and x86) |
printf("Windows (x64 and x86) ");fprintf(ficlog,"Windows (x64 and x86) "); |
printf("Windows (x64 and x86) ");if(logged) fprintf(ficlog,"Windows (x64 and x86) "); |
#elif __unix__ // all unices, not all compilers |
#elif __unix__ // all unices, not all compilers |
// Unix |
// Unix |
printf("Unix ");fprintf(ficlog,"Unix "); |
printf("Unix ");if(logged) fprintf(ficlog,"Unix "); |
#elif __linux__ |
#elif __linux__ |
// linux |
// linux |
printf("linux ");fprintf(ficlog,"linux "); |
printf("linux ");if(logged) fprintf(ficlog,"linux "); |
#elif __APPLE__ |
#elif __APPLE__ |
// Mac OS, not sure if this is covered by __posix__ and/or __unix__ though.. |
// Mac OS, not sure if this is covered by __posix__ and/or __unix__ though.. |
printf("Mac OS ");fprintf(ficlog,"Mac OS "); |
printf("Mac OS ");if(logged) fprintf(ficlog,"Mac OS "); |
#endif |
#endif |
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/* __MINGW32__ */ |
/* __MINGW32__ */ |
Line 5949 void syscompilerinfo()
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Line 6013 void syscompilerinfo()
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/* _DEBUG // Defined when you compile with /LDd, /MDd, and /MTd. */ |
/* _DEBUG // Defined when you compile with /LDd, /MDd, and /MTd. */ |
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#if UINTPTR_MAX == 0xffffffff |
#if UINTPTR_MAX == 0xffffffff |
printf(" 32-bit"); fprintf(ficlog," 32-bit");/* 32-bit */ |
printf(" 32-bit"); if(logged) fprintf(ficlog," 32-bit");/* 32-bit */ |
#elif UINTPTR_MAX == 0xffffffffffffffff |
#elif UINTPTR_MAX == 0xffffffffffffffff |
printf(" 64-bit"); fprintf(ficlog," 64-bit");/* 64-bit */ |
printf(" 64-bit"); if(logged) fprintf(ficlog," 64-bit");/* 64-bit */ |
#else |
#else |
printf(" wtf-bit"); fprintf(ficlog," wtf-bit");/* wtf */ |
printf(" wtf-bit"); if(logged) fprintf(ficlog," wtf-bit");/* wtf */ |
#endif |
#endif |
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#if defined(__GNUC__) |
#if defined(__GNUC__) |
Line 5966 void syscompilerinfo()
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Line 6030 void syscompilerinfo()
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+ __GNUC_MINOR__ * 100) |
+ __GNUC_MINOR__ * 100) |
# endif |
# endif |
printf(" using GNU C version %d.\n", __GNUC_VERSION__); |
printf(" using GNU C version %d.\n", __GNUC_VERSION__); |
fprintf(ficlog, " using GNU C version %d.\n", __GNUC_VERSION__); |
if(logged) fprintf(ficlog, " using GNU C version %d.\n", __GNUC_VERSION__); |
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if (uname(&sysInfo) != -1) { |
if (uname(&sysInfo) != -1) { |
printf("Running on: %s %s %s %s %s\n",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
printf("Running on: %s %s %s %s %s\n",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
fprintf(ficlog,"Running on: %s %s %s %s %s\n ",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
if(logged) fprintf(ficlog,"Running on: %s %s %s %s %s\n ",sysInfo.sysname, sysInfo.nodename, sysInfo.release, sysInfo.version, sysInfo.machine); |
} |
} |
else |
else |
perror("uname() error"); |
perror("uname() error"); |
//#ifndef __INTEL_COMPILER |
//#ifndef __INTEL_COMPILER |
#if !defined (__INTEL_COMPILER) && !defined(__APPLE__) |
#if !defined (__INTEL_COMPILER) && !defined(__APPLE__) |
printf("GNU libc version: %s\n", gnu_get_libc_version()); |
printf("GNU libc version: %s\n", gnu_get_libc_version()); |
fprintf(ficlog,"GNU libc version: %s\n", gnu_get_libc_version()); |
if(logged) fprintf(ficlog,"GNU libc version: %s\n", gnu_get_libc_version()); |
#endif |
#endif |
#endif |
#endif |
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Line 5985 void syscompilerinfo()
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Line 6049 void syscompilerinfo()
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// { |
// { |
#if defined(_MSC_VER) |
#if defined(_MSC_VER) |
if (IsWow64()){ |
if (IsWow64()){ |
printf("The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
printf("\nThe program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
fprintf(ficlog, "The program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
if (logged) fprintf(ficlog, "\nThe program (probably compiled for 32bit) is running under WOW64 (64bit) emulation.\n"); |
} |
} |
else{ |
else{ |
printf("The process is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
printf("\nThe program is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
fprintf(ficlog,"The programm is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
if (logged) fprintf(ficlog, "\nThe programm is not running under WOW64 (i.e probably on a 64bit Windows).\n"); |
} |
} |
// printf("\nPress Enter to continue..."); |
// printf("\nPress Enter to continue..."); |
// getchar(); |
// getchar(); |
Line 6166 int main(int argc, char *argv[])
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Line 6230 int main(int argc, char *argv[])
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/* FILE *fichtm; *//* Html File */ |
/* FILE *fichtm; *//* Html File */ |
/* FILE *ficgp;*/ /*Gnuplot File */ |
/* FILE *ficgp;*/ /*Gnuplot File */ |
struct stat info; |
struct stat info; |
double agedeb; |
double agedeb=0.; |
double ageminpar=1.e20,agemin=1.e20, agemaxpar=-1.e20, agemax=-1.e20; |
double ageminpar=1.e20,agemin=1.e20, agemaxpar=-1.e20, agemax=-1.e20; |
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double fret; |
double fret; |
double dum; /* Dummy variable */ |
double dum=0.; /* Dummy variable */ |
double ***p3mat; |
double ***p3mat; |
double ***mobaverage; |
double ***mobaverage; |
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Line 6180 int main(int argc, char *argv[])
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Line 6244 int main(int argc, char *argv[])
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char *tok, *val; /* pathtot */ |
char *tok, *val; /* pathtot */ |
int firstobs=1, lastobs=10; |
int firstobs=1, lastobs=10; |
int c, h , cpt; |
int c, h , cpt; |
int jl; |
int jl=0; |
int i1, j1, jk, stepsize; |
int i1, j1, jk, stepsize=0; |
int *tab; |
int *tab; |
int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilavproj=0 , prevfcast=0 ; /* moving average of prev, If prevfcast=1 prevalence projection */ |
int mobilav=0,popforecast=0; |
int mobilav=0,popforecast=0; |
int hstepm, nhstepm; |
int hstepm=0, nhstepm=0; |
int agemortsup; |
int agemortsup; |
float sumlpop=0.; |
float sumlpop=0.; |
double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jprev1=1, mprev1=1,anprev1=2000,jprev2=1, mprev2=1,anprev2=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
double jpyram=1, mpyram=1,anpyram=2000,jpyram1=1, mpyram1=1,anpyram1=2000; |
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double bage=0, fage=110, age, agelim, agebase; |
double bage=0, fage=110., age, agelim=0., agebase=0.; |
double ftolpl=FTOL; |
double ftolpl=FTOL; |
double **prlim; |
double **prlim; |
double ***param; /* Matrix of parameters */ |
double ***param; /* Matrix of parameters */ |
Line 6252 int main(int argc, char *argv[])
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Line 6316 int main(int argc, char *argv[])
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#else |
#else |
getcwd(pathcd, size); |
getcwd(pathcd, size); |
#endif |
#endif |
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syscompilerinfo(0); |
printf("\n%s\n%s",version,fullversion); |
printf("\n%s\n%s",version,fullversion); |
if(argc <=1){ |
if(argc <=1){ |
printf("\nEnter the parameter file name: "); |
printf("\nEnter the parameter file name: "); |
Line 6325 int main(int argc, char *argv[])
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Line 6389 int main(int argc, char *argv[])
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optionfilext=%s\n\ |
optionfilext=%s\n\ |
optionfilefiname='%s'\n",pathimach,pathtot,path,optionfile,optionfilext,optionfilefiname); |
optionfilefiname='%s'\n",pathimach,pathtot,path,optionfile,optionfilext,optionfilefiname); |
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syscompilerinfo(); |
syscompilerinfo(0); |
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printf("Local time (at start):%s",strstart); |
printf("Local time (at start):%s",strstart); |
fprintf(ficlog,"Local time (at start): %s",strstart); |
fprintf(ficlog,"Local time (at start): %s",strstart); |
Line 6379 int main(int argc, char *argv[])
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Line 6443 int main(int argc, char *argv[])
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fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=1+age+%s.\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=1+age+%s.\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficlog,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=1+age+%s.\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fprintf(ficlog,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=1+age+%s.\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model); |
fflush(ficlog); |
fflush(ficlog); |
if(model[0]=='#'|| model[0]== '\0'){ |
/* if(model[0]=='#'|| model[0]== '\0'){ */ |
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if(model[0]=='#'){ |
printf("Error in 'model' line: model should start with 'model=1+age+' and end with '.' \n \ |
printf("Error in 'model' line: model should start with 'model=1+age+' and end with '.' \n \ |
'model=1+age+.' or 'model=1+age+V1.' or 'model=1+age+age*age+V1+V1*age.' or \n \ |
'model=1+age+.' or 'model=1+age+V1.' or 'model=1+age+age*age+V1+V1*age.' or \n \ |
'model=1+age+V1+V2.' or 'model=1+age+V1+V2+V1*V2.' etc. \n"); \ |
'model=1+age+V1+V2.' or 'model=1+age+V1+V2+V1*V2.' etc. \n"); \ |
Line 6423 int main(int argc, char *argv[])
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Line 6488 int main(int argc, char *argv[])
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/*delti=vector(1,npar); *//* Scale of each paramater (output from hesscov)*/ |
/*delti=vector(1,npar); *//* Scale of each paramater (output from hesscov)*/ |
if(mle==-1){ /* Print a wizard for help writing covariance matrix */ |
if(mle==-1){ /* Print a wizard for help writing covariance matrix */ |
prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
prwizard(ncovmodel, nlstate, ndeath, model, ficparo); |
printf(" You choose mle=-1, look at file %s for a template of covariance matrix \n",filereso); |
printf(" You chose mle=-1, look at file %s for a template of covariance matrix \n",filereso); |
fprintf(ficlog," You choose mle=-1, look at file %s for a template of covariance matrix \n",filereso); |
fprintf(ficlog," You chose mle=-1, look at file %s for a template of covariance matrix \n",filereso); |
free_ma3x(delti3,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
free_ma3x(delti3,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel); |
fclose (ficparo); |
fclose (ficparo); |
fclose (ficlog); |
fclose (ficlog); |
Line 7090 Interval (in months) between two waves:
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Line 7155 Interval (in months) between two waves:
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fprintf(ficlog,"%d%d ",i,k); |
fprintf(ficlog,"%d%d ",i,k); |
fprintf(ficres,"%1d%1d ",i,k); |
fprintf(ficres,"%1d%1d ",i,k); |
for(j=1; j <=ncovmodel; j++){ |
for(j=1; j <=ncovmodel; j++){ |
printf("%lf ",p[jk]); |
printf("%12.7f ",p[jk]); |
fprintf(ficlog,"%lf ",p[jk]); |
fprintf(ficlog,"%12.7f ",p[jk]); |
fprintf(ficres,"%lf ",p[jk]); |
fprintf(ficres,"%12.7f ",p[jk]); |
jk++; |
jk++; |
} |
} |
printf("\n"); |
printf("\n"); |