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version 1.4, 2001/05/02 17:34:41
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version 1.20, 2002/02/20 17:22:01
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Line 8
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Line 8
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| Health expectancies are computed from the transistions observed between
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Health expectancies are computed from the transistions observed between
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| waves and are computed for each degree of severity of disability (number
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waves and are computed for each degree of severity of disability (number
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| of life states). More degrees you consider, more time is necessary to
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of life states). More degrees you consider, more time is necessary to
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| reach the Maximum Likelihood of the parameters involved in the model.
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reach the Maximum Likelihood of the parameters involved in the model.
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| The simplest model is the multinomial logistic model where pij is
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The simplest model is the multinomial logistic model where pij is
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| the probabibility to be observed in state j at the second wave conditional
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the probabibility to be observed in state j at the second wave conditional
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| to be observed in state i at the first wave. Therefore the model is:
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to be observed in state i at the first wave. Therefore the model is:
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Line 22
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Line 22
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| delay between waves is not identical for each individual, or if some
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delay between waves is not identical for each individual, or if some
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| individual missed an interview, the information is not rounded or lost, but
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individual missed an interview, the information is not rounded or lost, but
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| taken into account using an interpolation or extrapolation.
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taken into account using an interpolation or extrapolation.
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| hPijx is the probability to be
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hPijx is the probability to be
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| observed in state i at age x+h conditional to the observed state i at age
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observed in state i at age x+h conditional to the observed state i at age
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| x. The delay 'h' can be split into an exact number (nh*stepm) of
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x. The delay 'h' can be split into an exact number (nh*stepm) of
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| unobserved intermediate states. This elementary transition (by month or
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unobserved intermediate states. This elementary transition (by month or
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Line 51
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Line 51
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| #define FILENAMELENGTH 80
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#define FILENAMELENGTH 80
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| /*#define DEBUG*/
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/*#define DEBUG*/
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| #define windows
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#define windows
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| |
#define GLOCK_ERROR_NOPATH -1 /* empty path */
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| |
#define GLOCK_ERROR_GETCWD -2 /* cannot get cwd */
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| #define MAXPARM 30 /* Maximum number of parameters for the optimization */
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#define MAXPARM 30 /* Maximum number of parameters for the optimization */
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| #define NPARMAX 64 /* (nlstate+ndeath-1)*nlstate*ncovmodel */
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#define NPARMAX 64 /* (nlstate+ndeath-1)*nlstate*ncovmodel */
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Line 66
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Line 68
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| int nvar;
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int nvar;
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| static int cptcov;
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int cptcovn, cptcovage=0, cptcoveff=0,cptcov;
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| int cptcovn;
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| int npar=NPARMAX;
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int npar=NPARMAX;
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| int nlstate=2; /* Number of live states */
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int nlstate=2; /* Number of live states */
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| int ndeath=1; /* Number of dead states */
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int ndeath=1; /* Number of dead states */
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| int ncovmodel, ncov; /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */
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int ncovmodel, ncov; /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */
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| |
int popbased=0;
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| int *wav; /* Number of waves for this individuual 0 is possible */
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int *wav; /* Number of waves for this individuual 0 is possible */
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| int maxwav; /* Maxim number of waves */
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int maxwav; /* Maxim number of waves */
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| |
int jmin, jmax; /* min, max spacing between 2 waves */
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| int mle, weightopt;
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int mle, weightopt;
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| int **mw; /* mw[mi][i] is number of the mi wave for this individual */
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int **mw; /* mw[mi][i] is number of the mi wave for this individual */
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| int **dh; /* dh[mi][i] is number of steps between mi,mi+1 for this individual */
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int **dh; /* dh[mi][i] is number of steps between mi,mi+1 for this individual */
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| |
double jmean; /* Mean space between 2 waves */
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| double **oldm, **newm, **savm; /* Working pointers to matrices */
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double **oldm, **newm, **savm; /* Working pointers to matrices */
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| double **oldms, **newms, **savms; /* Fixed working pointers to matrices */
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double **oldms, **newms, **savms; /* Fixed working pointers to matrices */
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| FILE *fic,*ficpar, *ficparo,*ficres, *ficrespl, *ficrespij, *ficrest;
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FILE *fic,*ficpar, *ficparo,*ficres, *ficrespl, *ficrespij, *ficrest,*ficresf;
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| FILE *ficgp, *fichtm;
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FILE *ficgp, *fichtm,*ficresprob,*ficpop;
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| FILE *ficreseij;
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FILE *ficreseij;
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| char filerese[FILENAMELENGTH];
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char filerese[FILENAMELENGTH];
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| FILE *ficresvij;
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FILE *ficresvij;
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Line 89 FILE *ficreseij;
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Line 93 FILE *ficreseij;
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| FILE *ficresvpl;
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FILE *ficresvpl;
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| char fileresvpl[FILENAMELENGTH];
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char fileresvpl[FILENAMELENGTH];
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| #define NR_END 1
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#define NR_END 1
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| #define FREE_ARG char*
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#define FREE_ARG char*
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| #define FTOL 1.0e-10
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#define FTOL 1.0e-10
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Line 125 int stepm;
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Line 126 int stepm;
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| /* Stepm, step in month: minimum step interpolation*/
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/* Stepm, step in month: minimum step interpolation*/
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| int m,nb;
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int m,nb;
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| int *num, firstpass=0, lastpass=4,*cod, *ncodemax;
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int *num, firstpass=0, lastpass=4,*cod, *ncodemax, *Tage;
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| double **agev,*moisnais, *annais, *moisdc, *andc,**mint, **anint;
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double **agev,*moisnais, *annais, *moisdc, *andc,**mint, **anint;
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| double **pmmij;
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double **pmmij, ***probs, ***mobaverage;
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double dateintmean=0;
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| double *weight;
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double *weight;
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| int **s; /* Status */
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int **s; /* Status */
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| double *agedc, **covar, idx;
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double *agedc, **covar, idx;
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| int **nbcode, *Tcode, *Tvar, **codtab;
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int **nbcode, *Tcode, *Tvar, **codtab, **Tvard, *Tprod, cptcovprod, *Tvaraff;
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| double ftol=FTOL; /* Tolerance for computing Max Likelihood */
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double ftol=FTOL; /* Tolerance for computing Max Likelihood */
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| double ftolhess; /* Tolerance for computing hessian */
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double ftolhess; /* Tolerance for computing hessian */
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/**************** split *************************/
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static int split( char *path, char *dirc, char *name )
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{
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char *s; /* pointer */
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int l1, l2; /* length counters */
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l1 = strlen( path ); /* length of path */
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if ( l1 == 0 ) return( GLOCK_ERROR_NOPATH );
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s = strrchr( path, '\\' ); /* find last / */
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if ( s == NULL ) { /* no directory, so use current */
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#if defined(__bsd__) /* get current working directory */
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extern char *getwd( );
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if ( getwd( dirc ) == NULL ) {
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#else
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extern char *getcwd( );
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if ( getcwd( dirc, FILENAME_MAX ) == NULL ) {
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#endif
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return( GLOCK_ERROR_GETCWD );
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}
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strcpy( name, path ); /* we've got it */
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} else { /* strip direcotry from path */
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s++; /* after this, the filename */
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l2 = strlen( s ); /* length of filename */
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if ( l2 == 0 ) return( GLOCK_ERROR_NOPATH );
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strcpy( name, s ); /* save file name */
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strncpy( dirc, path, l1 - l2 ); /* now the directory */
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dirc[l1-l2] = 0; /* add zero */
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}
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l1 = strlen( dirc ); /* length of directory */
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if ( dirc[l1-1] != '\\' ) { dirc[l1] = '\\'; dirc[l1+1] = 0; }
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return( 0 ); /* we're done */
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}
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| |
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| /******************************************/
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/******************************************/
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Line 166 int nbocc(char *s, char occ)
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Line 203 int nbocc(char *s, char occ)
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| void cutv(char *u,char *v, char*t, char occ)
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void cutv(char *u,char *v, char*t, char occ)
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| {
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{
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| int i,lg,j,p;
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int i,lg,j,p=0;
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| i=0;
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i=0;
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| for(j=0; j<=strlen(t)-1; j++) {
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for(j=0; j<=strlen(t)-1; j++) {
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| if((t[j]!= occ) && (t[j+1]== occ)) p=j+1;
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if((t[j]!= occ) && (t[j+1]== occ)) p=j+1;
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Line 175 void cutv(char *u,char *v, char*t, char
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Line 212 void cutv(char *u,char *v, char*t, char
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| lg=strlen(t);
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lg=strlen(t);
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| for(j=0; j<p; j++) {
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for(j=0; j<p; j++) {
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| (u[j] = t[j]);
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(u[j] = t[j]);
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| u[p]='\0';
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| }
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}
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u[p]='\0';
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| for(j=0; j<= lg; j++) {
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for(j=0; j<= lg; j++) {
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| if (j>=(p+1))(v[j-p-1] = t[j]);
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if (j>=(p+1))(v[j-p-1] = t[j]);
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Line 613 double **prevalim(double **prlim, int nl
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Line 650 double **prevalim(double **prlim, int nl
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| for (j=1;j<=nlstate+ndeath;j++){
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for (j=1;j<=nlstate+ndeath;j++){
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| oldm[ii][j]=(ii==j ? 1.0 : 0.0);
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oldm[ii][j]=(ii==j ? 1.0 : 0.0);
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| }
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}
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| /* Even if hstepm = 1, at least one multiplication by the unit matrix */
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cov[1]=1.;
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/* Even if hstepm = 1, at least one multiplication by the unit matrix */
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| for(agefin=age-stepm/YEARM; agefin>=age-delaymax; agefin=agefin-stepm/YEARM){
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for(agefin=age-stepm/YEARM; agefin>=age-delaymax; agefin=agefin-stepm/YEARM){
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| newm=savm;
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newm=savm;
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| /* Covariates have to be included here again */
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/* Covariates have to be included here again */
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| cov[1]=1.;
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cov[2]=agefin;
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| cov[2]=agefin;
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| if (cptcovn>0){
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for (k=1; k<=cptcovn;k++) {
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| for (k=1; k<=cptcovn;k++) {cov[2+k]=nbcode[Tvar[k]][codtab[ij][k]];/*printf("Tcode[ij]=%d nbcode=%d\n",Tcode[ij],nbcode[k][Tcode[ij]]);*/}
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cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]];
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| }
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/*printf("ij=%d Tvar[k]=%d nbcode=%d cov=%lf\n",ij, Tvar[k],nbcode[Tvar[k]][codtab[ij][Tvar[k]]],cov[2+k]);*/
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}
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for (k=1; k<=cptcovage;k++)
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cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2];
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for (k=1; k<=cptcovprod;k++)
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cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]];
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/*printf("ij=%d cptcovprod=%d tvar=%d ", ij, cptcovprod, Tvar[1]);*/
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/*printf("ij=%d cov[3]=%lf cov[4]=%lf \n",ij, cov[3],cov[4]);*/
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| |
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| out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm);
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out=matprod2(newm, pmij(pmmij,cov,ncovmodel,x,nlstate),1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath, oldm);
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| savm=oldm;
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savm=oldm;
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Line 646 double **prevalim(double **prlim, int nl
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Line 695 double **prevalim(double **prlim, int nl
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| }
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}
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| }
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}
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| /*************** transition probabilities **********/
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/*************** transition probabilities ***************/
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| double **pmij(double **ps, double *cov, int ncovmodel, double *x, int nlstate )
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double **pmij(double **ps, double *cov, int ncovmodel, double *x, int nlstate )
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| {
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{
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Line 669 double **pmij(double **ps, double *cov,
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Line 718 double **pmij(double **ps, double *cov,
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| s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc];
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s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc];
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| /*printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2);*/
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/*printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2);*/
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| }
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}
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| ps[i][j]=s2;
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ps[i][j]=(s2);
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| }
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}
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| }
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}
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/*ps[3][2]=1;*/
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| for(i=1; i<= nlstate; i++){
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for(i=1; i<= nlstate; i++){
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| s1=0;
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s1=0;
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| for(j=1; j<i; j++)
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for(j=1; j<i; j++)
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Line 693 double **pmij(double **ps, double *cov,
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Line 744 double **pmij(double **ps, double *cov,
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| }
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}
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| }
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}
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| |
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| /* for(ii=1; ii<= nlstate+ndeath; ii++){
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/* for(ii=1; ii<= nlstate+ndeath; ii++){
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| for(jj=1; jj<= nlstate+ndeath; jj++){
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for(jj=1; jj<= nlstate+ndeath; jj++){
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| printf("%lf ",ps[ii][jj]);
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printf("%lf ",ps[ii][jj]);
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Line 710 double **pmij(double **ps, double *cov,
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Line 762 double **pmij(double **ps, double *cov,
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| double **matprod2(double **out, double **in,long nrl, long nrh, long ncl, long nch, long ncolol, long ncoloh, double **b)
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double **matprod2(double **out, double **in,long nrl, long nrh, long ncl, long nch, long ncolol, long ncoloh, double **b)
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| {
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{
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| /* Computes the matric product of in(1,nrh-nrl+1)(1,nch-ncl+1) times
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/* Computes the matrix product of in(1,nrh-nrl+1)(1,nch-ncl+1) times
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| b(1,nch-ncl+1)(1,ncoloh-ncolol+1) into out(...) */
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b(1,nch-ncl+1)(1,ncoloh-ncolol+1) into out(...) */
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| /* in, b, out are matrice of pointers which should have been initialized
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/* in, b, out are matrice of pointers which should have been initialized
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| before: only the contents of out is modified. The function returns
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before: only the contents of out is modified. The function returns
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Line 756 double ***hpxij(double ***po, int nhstep
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Line 808 double ***hpxij(double ***po, int nhstep
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| /* Covariates have to be included here again */
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/* Covariates have to be included here again */
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| cov[1]=1.;
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cov[1]=1.;
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| cov[2]=age+((h-1)*hstepm + (d-1))*stepm/YEARM;
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cov[2]=age+((h-1)*hstepm + (d-1))*stepm/YEARM;
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| if (cptcovn>0){
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for (k=1; k<=cptcovn;k++) cov[2+k]=nbcode[Tvar[k]][codtab[ij][Tvar[k]]];
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| for (k=1; k<=cptcovn;k++) cov[2+k]=nbcode[Tvar[k]][codtab[ij][k]];
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for (k=1; k<=cptcovage;k++)
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| }
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cov[2+Tage[k]]=cov[2+Tage[k]]*cov[2];
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for (k=1; k<=cptcovprod;k++)
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cov[2+Tprod[k]]=nbcode[Tvard[k][1]][codtab[ij][Tvard[k][1]]]*nbcode[Tvard[k][2]][codtab[ij][Tvard[k][2]]];
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| |
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| |
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| /*printf("hxi cptcov=%d cptcode=%d\n",cptcov,cptcode);*/
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/*printf("hxi cptcov=%d cptcode=%d\n",cptcov,cptcode);*/
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| /*printf("h=%d d=%d age=%f cov=%f\n",h,d,age,cov[2]);*/
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/*printf("h=%d d=%d age=%f cov=%f\n",h,d,age,cov[2]);*/
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| out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath,
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out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath,1,nlstate+ndeath,
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Line 780 double ***hpxij(double ***po, int nhstep
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Line 836 double ***hpxij(double ***po, int nhstep
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| /*************** log-likelihood *************/
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/*************** log-likelihood *************/
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| double func( double *x)
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double func( double *x)
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| {
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{
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| int i, ii, j, k, mi, d;
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int i, ii, j, k, mi, d, kk;
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| double l, ll[NLSTATEMAX], cov[NCOVMAX];
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double l, ll[NLSTATEMAX], cov[NCOVMAX];
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| double **out;
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double **out;
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| double sw; /* Sum of weights */
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double sw; /* Sum of weights */
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Line 790 double func( double *x)
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Line 846 double func( double *x)
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| /* We are differentiating ll according to initial status */
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/* We are differentiating ll according to initial status */
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| /* for (i=1;i<=npar;i++) printf("%f ", x[i]);*/
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/* for (i=1;i<=npar;i++) printf("%f ", x[i]);*/
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| /*for(i=1;i<imx;i++)
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/*for(i=1;i<imx;i++)
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| printf(" %d\n",s[4][i]);
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printf(" %d\n",s[4][i]);
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| */
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*/
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cov[1]=1.;
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|
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| for(k=1; k<=nlstate; k++) ll[k]=0.;
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for(k=1; k<=nlstate; k++) ll[k]=0.;
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| for (i=1,ipmx=0, sw=0.; i<=imx; i++){
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for (i=1,ipmx=0, sw=0.; i<=imx; i++){
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| for(mi=1; mi<= wav[i]-1; mi++){
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for (k=1; k<=cptcovn;k++) cov[2+k]=covar[Tvar[k]][i];
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for(mi=1; mi<= wav[i]-1; mi++){
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| for (ii=1;ii<=nlstate+ndeath;ii++)
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for (ii=1;ii<=nlstate+ndeath;ii++)
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| for (j=1;j<=nlstate+ndeath;j++) oldm[ii][j]=(ii==j ? 1.0 : 0.0);
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for (j=1;j<=nlstate+ndeath;j++) oldm[ii][j]=(ii==j ? 1.0 : 0.0);
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| for(d=0; d<dh[mi][i]; d++){
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for(d=0; d<dh[mi][i]; d++){
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| newm=savm;
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newm=savm;
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| cov[1]=1.;
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cov[2]=agev[mw[mi][i]][i]+d*stepm/YEARM;
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| cov[2]=agev[mw[mi][i]][i]+d*stepm/YEARM;
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for (kk=1; kk<=cptcovage;kk++) {
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| if (cptcovn>0){
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cov[Tage[kk]+2]=covar[Tvar[Tage[kk]]][i]*cov[2];
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| for (k=1; k<=cptcovn;k++) cov[2+k]=covar[1+k-1][i];
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}
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| }
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| out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath,
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out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath,
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| 1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate));
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1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate));
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| savm=oldm;
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savm=oldm;
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| oldm=newm;
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oldm=newm;
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|
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|
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| } /* end mult */
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} /* end mult */
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|
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| lli=log(out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);
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lli=log(out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);
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| /* printf(" %f ",out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);*/
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/* printf(" %f ",out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);*/
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| ipmx +=1;
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ipmx +=1;
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|
Line 860 void hesscov(double **matcov, double p[]
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Line 918 void hesscov(double **matcov, double p[]
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| void lubksb(double **a, int npar, int *indx, double b[]) ;
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void lubksb(double **a, int npar, int *indx, double b[]) ;
|
| void ludcmp(double **a, int npar, int *indx, double *d) ;
|
void ludcmp(double **a, int npar, int *indx, double *d) ;
|
|
|
|
|
|
|
| hess=matrix(1,npar,1,npar);
|
hess=matrix(1,npar,1,npar);
|
|
|
|
| printf("\nCalculation of the hessian matrix. Wait...\n");
|
printf("\nCalculation of the hessian matrix. Wait...\n");
|
|
Line 868 void hesscov(double **matcov, double p[]
|
Line 925 void hesscov(double **matcov, double p[]
|
| printf("%d",i);fflush(stdout);
|
printf("%d",i);fflush(stdout);
|
| hess[i][i]=hessii(p,ftolhess,i,delti);
|
hess[i][i]=hessii(p,ftolhess,i,delti);
|
| /*printf(" %f ",p[i]);*/
|
/*printf(" %f ",p[i]);*/
|
| |
/*printf(" %lf ",hess[i][i]);*/
|
| }
|
}
|
|
|
|
| for (i=1;i<=npar;i++) {
|
for (i=1;i<=npar;i++) {
|
| for (j=1;j<=npar;j++) {
|
for (j=1;j<=npar;j++) {
|
| if (j>i) {
|
if (j>i) {
|
| printf(".%d%d",i,j);fflush(stdout);
|
printf(".%d%d",i,j);fflush(stdout);
|
| hess[i][j]=hessij(p,delti,i,j);
|
hess[i][j]=hessij(p,delti,i,j);
|
| hess[j][i]=hess[i][j];
|
hess[j][i]=hess[i][j];
|
| |
/*printf(" %lf ",hess[i][j]);*/
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
Line 979 double hessii( double x[], double delta,
|
Line 1038 double hessii( double x[], double delta,
|
| }
|
}
|
| }
|
}
|
| delti[theta]=delts;
|
delti[theta]=delts;
|
| return res;
|
return res;
|
|
|
|
| }
|
}
|
|
|
|
|
Line 1092 void lubksb(double **a, int n, int *indx
|
Line 1151 void lubksb(double **a, int n, int *indx
|
| }
|
}
|
|
|
|
| /************ Frequencies ********************/
|
/************ Frequencies ********************/
|
| void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax)
|
void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax,double **mint,double **anint, double dateprev1,double dateprev2)
|
| { /* Some frequencies */
|
{ /* Some frequencies */
|
|
|
|
| int i, m, jk, k1, i1, j1, bool, z1,z2,j;
|
int i, m, jk, k1,i1, j1, bool, z1,z2,j;
|
| double ***freq; /* Frequencies */
|
double ***freq; /* Frequencies */
|
| double *pp;
|
double *pp;
|
| double pos;
|
double pos, k2, dateintsum=0,k2cpt=0;
|
| FILE *ficresp;
|
FILE *ficresp;
|
| char fileresp[FILENAMELENGTH];
|
char fileresp[FILENAMELENGTH];
|
|
|
|
| pp=vector(1,nlstate);
|
pp=vector(1,nlstate);
|
|
|
probs= ma3x(1,AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
| strcpy(fileresp,"p");
|
strcpy(fileresp,"p");
|
| strcat(fileresp,fileres);
|
strcat(fileresp,fileres);
|
| if((ficresp=fopen(fileresp,"w"))==NULL) {
|
if((ficresp=fopen(fileresp,"w"))==NULL) {
|
|
Line 1113 void freqsummary(char fileres[], int ag
|
Line 1172 void freqsummary(char fileres[], int ag
|
| freq= ma3x(-1,nlstate+ndeath,-1,nlstate+ndeath,agemin,agemax+3);
|
freq= ma3x(-1,nlstate+ndeath,-1,nlstate+ndeath,agemin,agemax+3);
|
| j1=0;
|
j1=0;
|
|
|
|
| j=cptcovn;
|
j=cptcoveff;
|
| if (cptcovn<1) {j=1;ncodemax[1]=1;}
|
if (cptcovn<1) {j=1;ncodemax[1]=1;}
|
|
|
|
| for(k1=1; k1<=j;k1++){
|
for(k1=1; k1<=j;k1++){
|
| for(i1=1; i1<=ncodemax[k1];i1++){
|
for(i1=1; i1<=ncodemax[k1];i1++){
|
| j1++;
|
j1++;
|
|
|
/*printf("cptcoveff=%d Tvaraff=%d", cptcoveff,Tvaraff[1]);
|
| |
scanf("%d", i);*/
|
| for (i=-1; i<=nlstate+ndeath; i++)
|
for (i=-1; i<=nlstate+ndeath; i++)
|
| for (jk=-1; jk<=nlstate+ndeath; jk++)
|
for (jk=-1; jk<=nlstate+ndeath; jk++)
|
| for(m=agemin; m <= agemax+3; m++)
|
for(m=agemin; m <= agemax+3; m++)
|
| freq[i][jk][m]=0;
|
freq[i][jk][m]=0;
|
|
|
|
| |
dateintsum=0;
|
| |
k2cpt=0;
|
| for (i=1; i<=imx; i++) {
|
for (i=1; i<=imx; i++) {
|
| bool=1;
|
bool=1;
|
| if (cptcovn>0) {
|
if (cptcovn>0) {
|
| for (z1=1; z1<=cptcovn; z1++)
|
for (z1=1; z1<=cptcoveff; z1++)
|
| if (covar[Tvar[z1]][i]!= nbcode[Tvar[z1]][codtab[j1][z1]]) bool=0;
|
if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]])
|
| |
bool=0;
|
| }
|
}
|
| if (bool==1) {
|
if (bool==1) {
|
| for(m=firstpass; m<=lastpass-1; m++){
|
for(m=firstpass; m<=lastpass; m++){
|
| if(agev[m][i]==0) agev[m][i]=agemax+1;
|
k2=anint[m][i]+(mint[m][i]/12.);
|
| if(agev[m][i]==1) agev[m][i]=agemax+2;
|
if ((k2>=dateprev1) && (k2<=dateprev2)) {
|
| freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
|
if(agev[m][i]==0) agev[m][i]=agemax+1;
|
| freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
|
if(agev[m][i]==1) agev[m][i]=agemax+2;
|
| |
freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
|
| |
freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
|
| |
if ((agev[m][i]>1) && (agev[m][i]< (agemax+3))) {
|
| |
dateintsum=dateintsum+k2;
|
| |
k2cpt++;
|
| |
}
|
| |
|
| |
}
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| if (cptcovn>0) {
|
if (cptcovn>0) {
|
| fprintf(ficresp, "\n#Variable");
|
fprintf(ficresp, "\n#********** Variable ");
|
| for (z1=1; z1<=cptcovn; z1++) fprintf(ficresp, " V%d=%d",Tvar[z1],nbcode[Tvar[z1]][codtab[j1][z1]]);
|
for (z1=1; z1<=cptcoveff; z1++) fprintf(ficresp, "V%d=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtab[j1][z1]]);
|
| }
|
fprintf(ficresp, "**********\n#");
|
| fprintf(ficresp, "\n#");
|
}
|
| for(i=1; i<=nlstate;i++)
|
for(i=1; i<=nlstate;i++)
|
| fprintf(ficresp, " Age Prev(%d) N(%d) N",i,i);
|
fprintf(ficresp, " Age Prev(%d) N(%d) N",i,i);
|
| fprintf(ficresp, "\n");
|
fprintf(ficresp, "\n");
|
|
Line 1156 void freqsummary(char fileres[], int ag
|
Line 1227 void freqsummary(char fileres[], int ag
|
| printf("Age %d", i);
|
printf("Age %d", i);
|
| for(jk=1; jk <=nlstate ; jk++){
|
for(jk=1; jk <=nlstate ; jk++){
|
| for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
|
for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
|
| pp[jk] += freq[jk][m][i];
|
pp[jk] += freq[jk][m][i];
|
| }
|
}
|
| for(jk=1; jk <=nlstate ; jk++){
|
for(jk=1; jk <=nlstate ; jk++){
|
| for(m=-1, pos=0; m <=0 ; m++)
|
for(m=-1, pos=0; m <=0 ; m++)
|
|
Line 1166 void freqsummary(char fileres[], int ag
|
Line 1237 void freqsummary(char fileres[], int ag
|
| else
|
else
|
| printf(" %d.=%.0f loss[%d]=NaNQ%%",jk,pp[jk],jk);
|
printf(" %d.=%.0f loss[%d]=NaNQ%%",jk,pp[jk],jk);
|
| }
|
}
|
| for(jk=1; jk <=nlstate ; jk++){
|
|
| for(m=1, pp[jk]=0; m <=nlstate+ndeath; m++)
|
for(jk=1; jk <=nlstate ; jk++){
|
| |
for(m=0, pp[jk]=0; m <=nlstate+ndeath; m++)
|
| pp[jk] += freq[jk][m][i];
|
pp[jk] += freq[jk][m][i];
|
| }
|
}
|
| |
|
| for(jk=1,pos=0; jk <=nlstate ; jk++)
|
for(jk=1,pos=0; jk <=nlstate ; jk++)
|
| pos += pp[jk];
|
pos += pp[jk];
|
| for(jk=1; jk <=nlstate ; jk++){
|
for(jk=1; jk <=nlstate ; jk++){
|
|
Line 1178 void freqsummary(char fileres[], int ag
|
Line 1251 void freqsummary(char fileres[], int ag
|
| else
|
else
|
| printf(" %d.=%.0f prev[%d]=NaNQ%%",jk,pp[jk],jk);
|
printf(" %d.=%.0f prev[%d]=NaNQ%%",jk,pp[jk],jk);
|
| if( i <= (int) agemax){
|
if( i <= (int) agemax){
|
| if(pos>=1.e-5)
|
if(pos>=1.e-5){
|
| fprintf(ficresp," %d %.5f %.0f %.0f",i,pp[jk]/pos, pp[jk],pos);
|
fprintf(ficresp," %d %.5f %.0f %.0f",i,pp[jk]/pos, pp[jk],pos);
|
| |
probs[i][jk][j1]= pp[jk]/pos;
|
| |
/*printf("\ni=%d jk=%d j1=%d %.5f %.0f %.0f %f",i,jk,j1,pp[jk]/pos, pp[jk],pos,probs[i][jk][j1]);*/
|
| |
}
|
| else
|
else
|
| fprintf(ficresp," %d NaNq %.0f %.0f",i,pp[jk],pos);
|
fprintf(ficresp," %d NaNq %.0f %.0f",i,pp[jk],pos);
|
| }
|
}
|
|
Line 1193 void freqsummary(char fileres[], int ag
|
Line 1269 void freqsummary(char fileres[], int ag
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| |
dateintmean=dateintsum/k2cpt;
|
|
|
|
| fclose(ficresp);
|
fclose(ficresp);
|
| free_ma3x(freq,-1,nlstate+ndeath,-1,nlstate+ndeath,(int) agemin,(int) agemax+3);
|
free_ma3x(freq,-1,nlstate+ndeath,-1,nlstate+ndeath,(int) agemin,(int) agemax+3);
|
| free_vector(pp,1,nlstate);
|
free_vector(pp,1,nlstate);
|
|
|
|
| |
/* End of Freq */
|
| |
}
|
| |
|
| |
/************ Prevalence ********************/
|
| |
void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax,double **mint,double **anint, double dateprev1,double dateprev2, double calagedate)
|
| |
{ /* Some frequencies */
|
| |
|
| |
int i, m, jk, k1, i1, j1, bool, z1,z2,j;
|
| |
double ***freq; /* Frequencies */
|
| |
double *pp;
|
| |
double pos, k2;
|
| |
|
| |
pp=vector(1,nlstate);
|
| |
probs= ma3x(1,AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
| |
|
| |
freq=ma3x(-1,nlstate+ndeath,-1,nlstate+ndeath,agemin,agemax+3);
|
| |
j1=0;
|
| |
|
| |
j=cptcoveff;
|
| |
if (cptcovn<1) {j=1;ncodemax[1]=1;}
|
| |
|
| |
for(k1=1; k1<=j;k1++){
|
| |
for(i1=1; i1<=ncodemax[k1];i1++){
|
| |
j1++;
|
| |
|
| |
for (i=-1; i<=nlstate+ndeath; i++)
|
| |
for (jk=-1; jk<=nlstate+ndeath; jk++)
|
| |
for(m=agemin; m <= agemax+3; m++)
|
| |
freq[i][jk][m]=0;
|
| |
|
| |
for (i=1; i<=imx; i++) {
|
| |
bool=1;
|
| |
if (cptcovn>0) {
|
| |
for (z1=1; z1<=cptcoveff; z1++)
|
| |
if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]])
|
| |
bool=0;
|
| |
}
|
| |
if (bool==1) {
|
| |
for(m=firstpass; m<=lastpass; m++){
|
| |
k2=anint[m][i]+(mint[m][i]/12.);
|
| |
if ((k2>=dateprev1) && (k2<=dateprev2)) {
|
| |
if(agev[m][i]==0) agev[m][i]=agemax+1;
|
| |
if(agev[m][i]==1) agev[m][i]=agemax+2;
|
| |
freq[s[m][i]][s[m+1][i]][(int)(agev[m][i]+1-((int)calagedate %12)/12.)] += weight[i];
|
| |
freq[s[m][i]][s[m+1][i]][(int)(agemax+3+1)] += weight[i];
|
| |
}
|
| |
}
|
| |
}
|
| |
}
|
| |
|
| |
for(i=(int)agemin; i <= (int)agemax+3; i++){
|
| |
for(jk=1; jk <=nlstate ; jk++){
|
| |
for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
|
| |
pp[jk] += freq[jk][m][i];
|
| |
}
|
| |
for(jk=1; jk <=nlstate ; jk++){
|
| |
for(m=-1, pos=0; m <=0 ; m++)
|
| |
pos += freq[jk][m][i];
|
| |
}
|
| |
|
| |
for(jk=1; jk <=nlstate ; jk++){
|
| |
for(m=0, pp[jk]=0; m <=nlstate+ndeath; m++)
|
| |
pp[jk] += freq[jk][m][i];
|
| |
}
|
| |
|
| |
for(jk=1,pos=0; jk <=nlstate ; jk++) pos += pp[jk];
|
| |
|
| |
for(jk=1; jk <=nlstate ; jk++){
|
| |
if( i <= (int) agemax){
|
| |
if(pos>=1.e-5){
|
| |
probs[i][jk][j1]= pp[jk]/pos;
|
| |
}
|
| |
}
|
| |
}
|
| |
|
| |
}
|
| |
}
|
| |
}
|
| |
|
| |
|
| |
free_ma3x(freq,-1,nlstate+ndeath,-1,nlstate+ndeath,(int) agemin,(int) agemax+3);
|
| |
free_vector(pp,1,nlstate);
|
| |
|
| } /* End of Freq */
|
} /* End of Freq */
|
|
|
|
| /************* Waves Concatenation ***************/
|
/************* Waves Concatenation ***************/
|
|
Line 1212 void concatwav(int wav[], int **dh, int
|
Line 1372 void concatwav(int wav[], int **dh, int
|
| */
|
*/
|
|
|
|
| int i, mi, m;
|
int i, mi, m;
|
| int j, k=0,jk, ju, jl,jmin=1e+5, jmax=-1;
|
/* int j, k=0,jk, ju, jl,jmin=1e+5, jmax=-1;
|
| float sum=0.;
|
double sum=0., jmean=0.;*/
|
|
|
|
| |
int j, k=0,jk, ju, jl;
|
| |
double sum=0.;
|
| |
jmin=1e+5;
|
| |
jmax=-1;
|
| |
jmean=0.;
|
| for(i=1; i<=imx; i++){
|
for(i=1; i<=imx; i++){
|
| mi=0;
|
mi=0;
|
| m=firstpass;
|
m=firstpass;
|
|
Line 1244 float sum=0.;
|
Line 1409 float sum=0.;
|
| dh[mi][i]=1;
|
dh[mi][i]=1;
|
| else{
|
else{
|
| if (s[mw[mi+1][i]][i] > nlstate) {
|
if (s[mw[mi+1][i]][i] > nlstate) {
|
| |
if (agedc[i] < 2*AGESUP) {
|
| j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12);
|
j= rint(agedc[i]*12-agev[mw[mi][i]][i]*12);
|
| if(j=0) j=1; /* Survives at least one month after exam */
|
if(j==0) j=1; /* Survives at least one month after exam */
|
| |
k=k+1;
|
| |
if (j >= jmax) jmax=j;
|
| |
if (j <= jmin) jmin=j;
|
| |
sum=sum+j;
|
| |
/* if (j<10) printf("j=%d num=%d ",j,i); */
|
| |
}
|
| }
|
}
|
| else{
|
else{
|
| j= rint( (agev[mw[mi+1][i]][i]*12 - agev[mw[mi][i]][i]*12));
|
j= rint( (agev[mw[mi+1][i]][i]*12 - agev[mw[mi][i]][i]*12));
|
| k=k+1;
|
k=k+1;
|
| if (j >= jmax) jmax=j;
|
if (j >= jmax) jmax=j;
|
| else if (j <= jmin)jmin=j;
|
else if (j <= jmin)jmin=j;
|
| |
/* if (j<10) printf("j=%d jmin=%d num=%d ",j,jmin,i); */
|
| sum=sum+j;
|
sum=sum+j;
|
| }
|
}
|
| jk= j/stepm;
|
jk= j/stepm;
|
|
Line 1266 float sum=0.;
|
Line 1439 float sum=0.;
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| printf("Delay (in months) between two waves Min=%d Max=%d Mean=%f\n\n ",jmin, jmax,sum/k);
|
jmean=sum/k;
|
| }
|
printf("Delay (in months) between two waves Min=%d Max=%d Mean=%f\n\n ",jmin, jmax,jmean);
|
| |
}
|
| /*********** Tricode ****************************/
|
/*********** Tricode ****************************/
|
| void tricode(int *Tvar, int **nbcode, int imx)
|
void tricode(int *Tvar, int **nbcode, int imx)
|
| {
|
{
|
| int Ndum[80],ij, k, j, i;
|
int Ndum[20],ij=1, k, j, i;
|
| int cptcode=0;
|
int cptcode=0;
|
| for (k=0; k<79; k++) Ndum[k]=0;
|
cptcoveff=0;
|
| |
|
| |
for (k=0; k<19; k++) Ndum[k]=0;
|
| for (k=1; k<=7; k++) ncodemax[k]=0;
|
for (k=1; k<=7; k++) ncodemax[k]=0;
|
|
|
|
| for (j=1; j<=cptcovn; j++) {
|
for (j=1; j<=(cptcovn+2*cptcovprod); j++) {
|
| for (i=1; i<=imx; i++) {
|
for (i=1; i<=imx; i++) {
|
| ij=(int)(covar[Tvar[j]][i]);
|
ij=(int)(covar[Tvar[j]][i]);
|
| Ndum[ij]++;
|
Ndum[ij]++;
|
| |
/*printf("i=%d ij=%d Ndum[ij]=%d imx=%d",i,ij,Ndum[ij],imx);*/
|
| if (ij > cptcode) cptcode=ij;
|
if (ij > cptcode) cptcode=ij;
|
| }
|
}
|
| /*printf("cptcode=%d cptcovn=%d ",cptcode,cptcovn);*/
|
|
| for (i=0; i<=cptcode; i++) {
|
for (i=0; i<=cptcode; i++) {
|
| if(Ndum[i]!=0) ncodemax[j]++;
|
if(Ndum[i]!=0) ncodemax[j]++;
|
| }
|
}
|
|
|
|
| ij=1;
|
ij=1;
|
| |
|
| |
|
| for (i=1; i<=ncodemax[j]; i++) {
|
for (i=1; i<=ncodemax[j]; i++) {
|
| for (k=0; k<=79; k++) {
|
for (k=0; k<=19; k++) {
|
| if (Ndum[k] != 0) {
|
if (Ndum[k] != 0) {
|
| nbcode[Tvar[j]][ij]=k;
|
nbcode[Tvar[j]][ij]=k;
|
| ij++;
|
ij++;
|
|
Line 1297 void tricode(int *Tvar, int **nbcode, in
|
Line 1475 void tricode(int *Tvar, int **nbcode, in
|
| if (ij > ncodemax[j]) break;
|
if (ij > ncodemax[j]) break;
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
|
|
| }
|
for (k=0; k<19; k++) Ndum[k]=0;
|
| |
|
| |
for (i=1; i<=ncovmodel-2; i++) {
|
| |
ij=Tvar[i];
|
| |
Ndum[ij]++;
|
| |
}
|
| |
|
| |
ij=1;
|
| |
for (i=1; i<=10; i++) {
|
| |
if((Ndum[i]!=0) && (i<=ncov)){
|
| |
Tvaraff[ij]=i;
|
| |
ij++;
|
| |
}
|
| |
}
|
| |
|
| |
cptcoveff=ij-1;
|
| |
}
|
|
|
|
| /*********** Health Expectancies ****************/
|
/*********** Health Expectancies ****************/
|
|
|
|
|
Line 1360 void varevsij(char fileres[], double ***
|
Line 1554 void varevsij(char fileres[], double ***
|
| double **dnewm,**doldm;
|
double **dnewm,**doldm;
|
| int i, j, nhstepm, hstepm, h;
|
int i, j, nhstepm, hstepm, h;
|
| int k, cptcode;
|
int k, cptcode;
|
| double *xp;
|
double *xp;
|
| double **gp, **gm;
|
double **gp, **gm;
|
| double ***gradg, ***trgradg;
|
double ***gradg, ***trgradg;
|
| double ***p3mat;
|
double ***p3mat;
|
|
Line 1396 void varevsij(char fileres[], double ***
|
Line 1590 void varevsij(char fileres[], double ***
|
| }
|
}
|
| hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij);
|
hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij);
|
| prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij);
|
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij);
|
| |
|
| |
if (popbased==1) {
|
| |
for(i=1; i<=nlstate;i++)
|
| |
prlim[i][i]=probs[(int)age][i][ij];
|
| |
}
|
| |
|
| for(j=1; j<= nlstate; j++){
|
for(j=1; j<= nlstate; j++){
|
| for(h=0; h<=nhstepm; h++){
|
for(h=0; h<=nhstepm; h++){
|
| for(i=1, gp[h][j]=0.;i<=nlstate;i++)
|
for(i=1, gp[h][j]=0.;i<=nlstate;i++)
|
|
Line 1407 void varevsij(char fileres[], double ***
|
Line 1607 void varevsij(char fileres[], double ***
|
| xp[i] = x[i] - (i==theta ?delti[theta]:0);
|
xp[i] = x[i] - (i==theta ?delti[theta]:0);
|
| hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij);
|
hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij);
|
| prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij);
|
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ij);
|
| |
|
| |
if (popbased==1) {
|
| |
for(i=1; i<=nlstate;i++)
|
| |
prlim[i][i]=probs[(int)age][i][ij];
|
| |
}
|
| |
|
| for(j=1; j<= nlstate; j++){
|
for(j=1; j<= nlstate; j++){
|
| for(h=0; h<=nhstepm; h++){
|
for(h=0; h<=nhstepm; h++){
|
| for(i=1, gm[h][j]=0.;i<=nlstate;i++)
|
for(i=1, gm[h][j]=0.;i<=nlstate;i++)
|
| gm[h][j] += prlim[i][i]*p3mat[i][j][h];
|
gm[h][j] += prlim[i][i]*p3mat[i][j][h];
|
| }
|
}
|
| }
|
}
|
| |
|
| for(j=1; j<= nlstate; j++)
|
for(j=1; j<= nlstate; j++)
|
| for(h=0; h<=nhstepm; h++){
|
for(h=0; h<=nhstepm; h++){
|
| gradg[h][theta][j]= (gp[h][j]-gm[h][j])/2./delti[theta];
|
gradg[h][theta][j]= (gp[h][j]-gm[h][j])/2./delti[theta];
|
|
Line 1542 void varprevlim(char fileres[], double *
|
Line 1749 void varprevlim(char fileres[], double *
|
|
|
|
| }
|
}
|
|
|
|
| |
/************ Variance of one-step probabilities ******************/
|
| |
void varprob(char fileres[], double **matcov, double x[], double delti[], int nlstate, double bage, double fage, int ij)
|
| |
{
|
| |
int i, j;
|
| |
int k=0, cptcode;
|
| |
double **dnewm,**doldm;
|
| |
double *xp;
|
| |
double *gp, *gm;
|
| |
double **gradg, **trgradg;
|
| |
double age,agelim, cov[NCOVMAX];
|
| |
int theta;
|
| |
char fileresprob[FILENAMELENGTH];
|
|
|
|
| |
strcpy(fileresprob,"prob");
|
| |
strcat(fileresprob,fileres);
|
| |
if((ficresprob=fopen(fileresprob,"w"))==NULL) {
|
| |
printf("Problem with resultfile: %s\n", fileresprob);
|
| |
}
|
| |
printf("Computing variance of one-step probabilities: result on file '%s' \n",fileresprob);
|
| |
|
| |
|
| |
xp=vector(1,npar);
|
| |
dnewm=matrix(1,(nlstate+ndeath)*(nlstate+ndeath),1,npar);
|
| |
doldm=matrix(1,(nlstate+ndeath)*(nlstate+ndeath),1,(nlstate+ndeath)*(nlstate+ndeath));
|
| |
|
| |
cov[1]=1;
|
| |
for (age=bage; age<=fage; age ++){
|
| |
cov[2]=age;
|
| |
gradg=matrix(1,npar,1,9);
|
| |
trgradg=matrix(1,9,1,npar);
|
| |
gp=vector(1,(nlstate+ndeath)*(nlstate+ndeath));
|
| |
gm=vector(1,(nlstate+ndeath)*(nlstate+ndeath));
|
| |
|
| |
for(theta=1; theta <=npar; theta++){
|
| |
for(i=1; i<=npar; i++)
|
| |
xp[i] = x[i] + (i==theta ?delti[theta]:0);
|
| |
|
| |
pmij(pmmij,cov,ncovmodel,xp,nlstate);
|
| |
|
| |
k=0;
|
| |
for(i=1; i<= (nlstate+ndeath); i++){
|
| |
for(j=1; j<=(nlstate+ndeath);j++){
|
| |
k=k+1;
|
| |
gp[k]=pmmij[i][j];
|
| |
}
|
| |
}
|
| |
|
| |
for(i=1; i<=npar; i++)
|
| |
xp[i] = x[i] - (i==theta ?delti[theta]:0);
|
| |
|
| |
|
| |
pmij(pmmij,cov,ncovmodel,xp,nlstate);
|
| |
k=0;
|
| |
for(i=1; i<=(nlstate+ndeath); i++){
|
| |
for(j=1; j<=(nlstate+ndeath);j++){
|
| |
k=k+1;
|
| |
gm[k]=pmmij[i][j];
|
| |
}
|
| |
}
|
| |
|
| |
for(i=1; i<= (nlstate+ndeath)*(nlstate+ndeath); i++)
|
| |
gradg[theta][i]=(gp[i]-gm[i])/2./delti[theta];
|
| |
}
|
| |
|
| |
for(j=1; j<=(nlstate+ndeath)*(nlstate+ndeath);j++)
|
| |
for(theta=1; theta <=npar; theta++)
|
| |
trgradg[j][theta]=gradg[theta][j];
|
| |
|
| |
matprod2(dnewm,trgradg,1,9,1,npar,1,npar,matcov);
|
| |
matprod2(doldm,dnewm,1,9,1,npar,1,9,gradg);
|
| |
|
| |
pmij(pmmij,cov,ncovmodel,x,nlstate);
|
| |
|
| |
k=0;
|
| |
for(i=1; i<=(nlstate+ndeath); i++){
|
| |
for(j=1; j<=(nlstate+ndeath);j++){
|
| |
k=k+1;
|
| |
gm[k]=pmmij[i][j];
|
| |
}
|
| |
}
|
| |
|
| |
/*printf("\n%d ",(int)age);
|
| |
for (i=1; i<=(nlstate+ndeath)*(nlstate+ndeath-1);i++){
|
| |
|
| |
|
| |
printf("%e [%e ;%e] ",gm[i],gm[i]-2*sqrt(doldm[i][i]),gm[i]+2*sqrt(doldm[i][i]));
|
| |
}*/
|
| |
|
| |
fprintf(ficresprob,"\n%d ",(int)age);
|
| |
|
| |
for (i=1; i<=(nlstate+ndeath)*(nlstate+ndeath-1);i++){
|
| |
if (i== 2) fprintf(ficresprob,"%.3e %.3e ",gm[i],doldm[i][i]);
|
| |
if (i== 4) fprintf(ficresprob,"%.3e %.3e ",gm[i],doldm[i][i]);
|
| |
}
|
| |
|
| |
free_vector(gp,1,(nlstate+ndeath)*(nlstate+ndeath));
|
| |
free_vector(gm,1,(nlstate+ndeath)*(nlstate+ndeath));
|
| |
free_matrix(trgradg,1,(nlstate+ndeath)*(nlstate+ndeath),1,npar);
|
| |
free_matrix(gradg,1,(nlstate+ndeath)*(nlstate+ndeath),1,npar);
|
| |
}
|
| |
free_vector(xp,1,npar);
|
| |
fclose(ficresprob);
|
| |
exit(0);
|
| |
}
|
|
|
|
| /***********************************************/
|
/***********************************************/
|
| /**************** Main Program *****************/
|
/**************** Main Program *****************/
|
|
Line 1552 void varprevlim(char fileres[], double *
|
Line 1862 void varprevlim(char fileres[], double *
|
| int main()
|
int main()
|
| {
|
{
|
|
|
|
| int i,j, k, n=MAXN,iter,m,size,cptcode, aaa, cptcod;
|
int i,j, k, n=MAXN,iter,m,size,cptcode, cptcod;
|
| double agedeb, agefin,hf;
|
double agedeb, agefin,hf;
|
| double agemin=1.e20, agemax=-1.e20;
|
double agemin=1.e20, agemax=-1.e20;
|
|
|
|
|
Line 1564 int main()
|
Line 1874 int main()
|
| int *indx;
|
int *indx;
|
| char line[MAXLINE], linepar[MAXLINE];
|
char line[MAXLINE], linepar[MAXLINE];
|
| char title[MAXLINE];
|
char title[MAXLINE];
|
| char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH];
|
char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH];
|
| char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH];
|
char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], fileresf[FILENAMELENGTH];
|
| char filerest[FILENAMELENGTH];
|
char filerest[FILENAMELENGTH];
|
| char fileregp[FILENAMELENGTH];
|
char fileregp[FILENAMELENGTH];
|
| |
char popfile[FILENAMELENGTH];
|
| char path[80],pathc[80],pathcd[80],pathtot[80],model[20];
|
char path[80],pathc[80],pathcd[80],pathtot[80],model[20];
|
| int firstobs=1, lastobs=10;
|
int firstobs=1, lastobs=10;
|
| int sdeb, sfin; /* Status at beginning and end */
|
int sdeb, sfin; /* Status at beginning and end */
|
| int c, h , cpt,l;
|
int c, h , cpt,l;
|
| int ju,jl, mi;
|
int ju,jl, mi;
|
| int i1,j1, k1,jk,aa,bb, stepsize;
|
int i1,j1, k1,k2,k3,jk,aa,bb, stepsize, ij;
|
| int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;
|
int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;
|
|
|
int mobilav=0,popforecast=0;
|
| int hstepm, nhstepm;
|
int hstepm, nhstepm;
|
| |
int *popage;/*boolprev=0 if date and zero if wave*/
|
| |
double jprev1, mprev1,anprev1,jprev2, mprev2,anprev2;
|
| |
|
| double bage, fage, age, agelim, agebase;
|
double bage, fage, age, agelim, agebase;
|
| double ftolpl=FTOL;
|
double ftolpl=FTOL;
|
| double **prlim;
|
double **prlim;
|
|
Line 1589 int main()
|
Line 1903 int main()
|
| double ***eij, ***vareij;
|
double ***eij, ***vareij;
|
| double **varpl; /* Variances of prevalence limits by age */
|
double **varpl; /* Variances of prevalence limits by age */
|
| double *epj, vepp;
|
double *epj, vepp;
|
| char version[80]="Imach version 0.64, May 2000, INED-EUROREVES ";
|
double kk1, kk2;
|
| |
double *popeffectif,*popcount;
|
| |
double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,jprojmean,mprojmean,anprojmean, calagedate;
|
| |
double yp,yp1,yp2;
|
| |
|
| |
char version[80]="Imach version 64b, May 2001, INED-EUROREVES ";
|
| char *alph[]={"a","a","b","c","d","e"}, str[4];
|
char *alph[]={"a","a","b","c","d","e"}, str[4];
|
| |
|
| |
|
| char z[1]="c", occ;
|
char z[1]="c", occ;
|
| #include <sys/time.h>
|
#include <sys/time.h>
|
| #include <time.h>
|
#include <time.h>
|
| char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];
|
char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];
|
| |
|
| /* long total_usecs;
|
/* long total_usecs;
|
| struct timeval start_time, end_time;
|
struct timeval start_time, end_time;
|
|
|
|
| gettimeofday(&start_time, (struct timezone*)0); */ /* at first time */
|
gettimeofday(&start_time, (struct timezone*)0); */ /* at first time */
|
|
|
|
|
|
|
| printf("\nIMACH, Version 0.64a");
|
printf("\nIMACH, Version 0.7");
|
| printf("\nEnter the parameter file name: ");
|
printf("\nEnter the parameter file name: ");
|
|
|
|
| #ifdef windows
|
#ifdef windows
|
| scanf("%s",pathtot);
|
scanf("%s",pathtot);
|
| cygwin_split_path(pathtot,path,optionfile);
|
getcwd(pathcd, size);
|
| printf("pathtot=%s, path=%s, optionfile=%s\n",pathtot,path,optionfile);
|
/*cygwin_split_path(pathtot,path,optionfile);
|
| chdir(path);
|
printf("pathtot=%s, path=%s, optionfile=%s\n",pathtot,path,optionfile);*/
|
|
|
/* cutv(path,optionfile,pathtot,'\\');*/
|
| /*size=30;
|
|
| getcwd(pathcd, size);
|
split(pathtot, path,optionfile);
|
| printf("pathcd=%s, path=%s, optionfile=%s\n",pathcd,path,optionfile);
|
|
| cutv(path,optionfile,pathtot,'\\');
|
|
| chdir(path);
|
chdir(path);
|
| replace(pathc,path);
|
replace(pathc,path);
|
| printf("pathtot=%s, path=%s, optionfile=%s\n",pathtot,path,optionfile);
|
|
| */
|
|
| #endif
|
#endif
|
| #ifdef unix
|
#ifdef unix
|
| scanf("%s",optionfile);
|
scanf("%s",optionfile);
|
|
Line 1653 int main()
|
Line 1971 int main()
|
| fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncov, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model);
|
fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncov, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model);
|
| printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate,ndeath, maxwav, mle, weightopt,model);
|
printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate,ndeath, maxwav, mle, weightopt,model);
|
| fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncov,nlstate,ndeath,maxwav, mle, weightopt,model);
|
fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncov,nlstate,ndeath,maxwav, mle, weightopt,model);
|
|
|
while((c=getc(ficpar))=='#' && c!= EOF){
|
| covar=matrix(1,NCOVMAX,1,n);
|
ungetc(c,ficpar);
|
| if (strlen(model)<=1) cptcovn=0;
|
fgets(line, MAXLINE, ficpar);
|
| else {
|
puts(line);
|
| j=0;
|
fputs(line,ficparo);
|
| j=nbocc(model,'+');
|
|
| cptcovn=j+1;
|
|
| }
|
}
|
| |
ungetc(c,ficpar);
|
| |
|
| |
|
| |
covar=matrix(0,NCOVMAX,1,n);
|
| |
cptcovn=0;
|
| |
if (strlen(model)>1) cptcovn=nbocc(model,'+')+1;
|
|
|
|
| ncovmodel=2+cptcovn;
|
ncovmodel=2+cptcovn;
|
| nvar=ncovmodel-1; /* Suppressing age as a basic covariate */
|
nvar=ncovmodel-1; /* Suppressing age as a basic covariate */
|
|
Line 1691 int main()
|
Line 2013 int main()
|
| fprintf(ficparo,"\n");
|
fprintf(ficparo,"\n");
|
| }
|
}
|
|
|
|
| npar= (nlstate+ndeath-1)*nlstate*ncovmodel;
|
npar= (nlstate+ndeath-1)*nlstate*ncovmodel;
|
| |
|
| p=param[1][1];
|
p=param[1][1];
|
|
|
|
| /* Reads comments: lines beginning with '#' */
|
/* Reads comments: lines beginning with '#' */
|
|
Line 1752 int main()
|
Line 2075 int main()
|
| printf("\n");
|
printf("\n");
|
|
|
|
|
|
|
| if(mle==1){
|
|
| /*-------- data file ----------*/
|
/*-------- data file ----------*/
|
| if((ficres =fopen(fileres,"w"))==NULL) {
|
if((ficres =fopen(fileres,"w"))==NULL) {
|
| printf("Problem with resultfile: %s\n", fileres);goto end;
|
printf("Problem with resultfile: %s\n", fileres);goto end;
|
|
Line 1782 int main()
|
Line 2104 int main()
|
| tab=ivector(1,NCOVMAX);
|
tab=ivector(1,NCOVMAX);
|
| ncodemax=ivector(1,8);
|
ncodemax=ivector(1,8);
|
|
|
|
| i=1;
|
i=1;
|
| while (fgets(line, MAXLINE, fic) != NULL) {
|
while (fgets(line, MAXLINE, fic) != NULL) {
|
| if ((i >= firstobs) && (i <=lastobs)) {
|
if ((i >= firstobs) && (i <=lastobs)) {
|
|
|
|
|
Line 1804 int main()
|
Line 2126 int main()
|
| cutv(stra, strb,line,' '); covar[j][i]=(double)(atoi(strb)); strcpy(line,stra);
|
cutv(stra, strb,line,' '); covar[j][i]=(double)(atoi(strb)); strcpy(line,stra);
|
| }
|
}
|
| num[i]=atol(stra);
|
num[i]=atol(stra);
|
|
|
|
| /*printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]), (mint[5][i]), (anint[5][i]), (s[5][i]), (mint[6][i]), (anint[6][i]), (s[6][i]));*/
|
/*if((s[2][i]==2) && (s[3][i]==-1)&&(s[4][i]==9)){
|
| |
printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]),weight[i], (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i])); ij=ij+1;}*/
|
|
|
|
| i=i+1;
|
i=i+1;
|
| }
|
}
|
| }
|
}
|
|
|
/* printf("ii=%d", ij);
|
| /*scanf("%d",i);*/
|
scanf("%d",i);*/
|
| imx=i-1; /* Number of individuals */
|
imx=i-1; /* Number of individuals */
|
|
|
|
| |
/* for (i=1; i<=imx; i++){
|
| |
if ((s[1][i]==3) && (s[2][i]==2)) s[2][i]=3;
|
| |
if ((s[2][i]==3) && (s[3][i]==2)) s[3][i]=3;
|
| |
if ((s[3][i]==3) && (s[4][i]==2)) s[4][i]=3;
|
| |
}
|
| |
|
| |
for (i=1; i<=imx; i++)
|
| |
if (covar[1][i]==0) printf("%d %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]), (mint[2][i]), (anint[2][i]), (s[2][i]), (mint[3][i]), (anint[3][i]), (s[3][i]), (mint[4][i]), (anint[4][i]), (s[4][i]));*/
|
| |
|
| /* Calculation of the number of parameter from char model*/
|
/* Calculation of the number of parameter from char model*/
|
| Tvar=ivector(1,8);
|
Tvar=ivector(1,15);
|
| |
Tprod=ivector(1,15);
|
| |
Tvaraff=ivector(1,15);
|
| |
Tvard=imatrix(1,15,1,2);
|
| |
Tage=ivector(1,15);
|
|
|
|
| if (strlen(model) >1){
|
if (strlen(model) >1){
|
| j=0;
|
j=0, j1=0, k1=1, k2=1;
|
| j=nbocc(model,'+');
|
j=nbocc(model,'+');
|
| |
j1=nbocc(model,'*');
|
| cptcovn=j+1;
|
cptcovn=j+1;
|
| |
cptcovprod=j1;
|
| |
|
|
|
|
| strcpy(modelsav,model);
|
strcpy(modelsav,model);
|
| if (j==0) {
|
if ((strcmp(model,"age")==0) || (strcmp(model,"age*age")==0)){
|
| cutv(stra,strb,modelsav,'V'); Tvar[1]=atoi(strb);
|
printf("Error. Non available option model=%s ",model);
|
| |
goto end;
|
| }
|
}
|
| else {
|
|
| for(i=j; i>=1;i--){
|
for(i=(j+1); i>=1;i--){
|
| cutv(stra,strb,modelsav,'+');
|
cutv(stra,strb,modelsav,'+');
|
| if (strchr(strb,'*')) {
|
if (nbocc(modelsav,'+')==0) strcpy(strb,modelsav);
|
| cutv(strd,strc,strb,'*');
|
/* printf("i=%d a=%s b=%s sav=%s\n",i, stra,strb,modelsav);*/
|
| cutv(strb,stre,strc,'V');Tvar[i+1]=ncov+1;
|
/*scanf("%d",i);*/
|
| |
if (strchr(strb,'*')) {
|
| |
cutv(strd,strc,strb,'*');
|
| |
if (strcmp(strc,"age")==0) {
|
| |
cptcovprod--;
|
| |
cutv(strb,stre,strd,'V');
|
| |
Tvar[i]=atoi(stre);
|
| |
cptcovage++;
|
| |
Tage[cptcovage]=i;
|
| |
/*printf("stre=%s ", stre);*/
|
| |
}
|
| |
else if (strcmp(strd,"age")==0) {
|
| |
cptcovprod--;
|
| |
cutv(strb,stre,strc,'V');
|
| |
Tvar[i]=atoi(stre);
|
| |
cptcovage++;
|
| |
Tage[cptcovage]=i;
|
| |
}
|
| |
else {
|
| |
cutv(strb,stre,strc,'V');
|
| |
Tvar[i]=ncov+k1;
|
| cutv(strb,strc,strd,'V');
|
cutv(strb,strc,strd,'V');
|
| |
Tprod[k1]=i;
|
| |
Tvard[k1][1]=atoi(strc);
|
| |
Tvard[k1][2]=atoi(stre);
|
| |
Tvar[cptcovn+k2]=Tvard[k1][1];
|
| |
Tvar[cptcovn+k2+1]=Tvard[k1][2];
|
| for (k=1; k<=lastobs;k++)
|
for (k=1; k<=lastobs;k++)
|
| covar[ncov+1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k];
|
covar[ncov+k1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k];
|
| |
k1++;
|
| |
k2=k2+2;
|
| }
|
}
|
| else {cutv(strd,strc,strb,'V');
|
|
| Tvar[i+1]=atoi(strc);
|
|
| }
|
|
| strcpy(modelsav,stra);
|
|
| }
|
}
|
| cutv(strd,strc,stra,'V');
|
else {
|
| Tvar[1]=atoi(strc);
|
/*printf("d=%s c=%s b=%s\n", strd,strc,strb);*/
|
| |
/* scanf("%d",i);*/
|
| |
cutv(strd,strc,strb,'V');
|
| |
Tvar[i]=atoi(strc);
|
| |
}
|
| |
strcpy(modelsav,stra);
|
| |
/*printf("a=%s b=%s sav=%s\n", stra,strb,modelsav);
|
| |
scanf("%d",i);*/
|
| }
|
}
|
| }
|
}
|
| /*printf("tvar=%d ",Tvar[1]);
|
|
| scanf("%d ",i);*/
|
/*printf("tvar1=%d tvar2=%d tvar3=%d cptcovage=%d Tage=%d",Tvar[1],Tvar[2],Tvar[3],cptcovage,Tage[1]);
|
| |
printf("cptcovprod=%d ", cptcovprod);
|
| |
scanf("%d ",i);*/
|
| fclose(fic);
|
fclose(fic);
|
|
|
|
| |
/* if(mle==1){*/
|
| if (weightopt != 1) { /* Maximisation without weights*/
|
if (weightopt != 1) { /* Maximisation without weights*/
|
| for(i=1;i<=n;i++) weight[i]=1.0;
|
for(i=1;i<=n;i++) weight[i]=1.0;
|
| }
|
}
|
| /*-calculation of age at interview from date of interview and age at death -*/
|
/*-calculation of age at interview from date of interview and age at death -*/
|
| agev=matrix(1,maxwav,1,imx);
|
agev=matrix(1,maxwav,1,imx);
|
| |
|
| |
for (i=1; i<=imx; i++)
|
| |
for(m=2; (m<= maxwav); m++)
|
| |
if ((mint[m][i]== 99) && (s[m][i] <= nlstate)){
|
| |
anint[m][i]=9999;
|
| |
s[m][i]=-1;
|
| |
}
|
|
|
|
| for (i=1; i<=imx; i++) {
|
for (i=1; i<=imx; i++) {
|
| agedc[i]=(moisdc[i]/12.+andc[i])-(moisnais[i]/12.+annais[i]);
|
agedc[i]=(moisdc[i]/12.+andc[i])-(moisnais[i]/12.+annais[i]);
|
|
Line 1863 int main()
|
Line 2243 int main()
|
| if(agedc[i]>0)
|
if(agedc[i]>0)
|
| if(moisdc[i]!=99 && andc[i]!=9999)
|
if(moisdc[i]!=99 && andc[i]!=9999)
|
| agev[m][i]=agedc[i];
|
agev[m][i]=agedc[i];
|
| else{
|
else {
|
| |
if (andc[i]!=9999){
|
| printf("Warning negative age at death: %d line:%d\n",num[i],i);
|
printf("Warning negative age at death: %d line:%d\n",num[i],i);
|
| agev[m][i]=-1;
|
agev[m][i]=-1;
|
| |
}
|
| }
|
}
|
| }
|
}
|
| else if(s[m][i] !=9){ /* Should no more exist */
|
else if(s[m][i] !=9){ /* Should no more exist */
|
|
Line 1908 printf("Total number of individuals= %d,
|
Line 2290 printf("Total number of individuals= %d,
|
| free_imatrix(outcome,1,maxwav+1,1,n);
|
free_imatrix(outcome,1,maxwav+1,1,n);
|
| free_vector(moisnais,1,n);
|
free_vector(moisnais,1,n);
|
| free_vector(annais,1,n);
|
free_vector(annais,1,n);
|
| free_matrix(mint,1,maxwav,1,n);
|
/* free_matrix(mint,1,maxwav,1,n);
|
| free_matrix(anint,1,maxwav,1,n);
|
free_matrix(anint,1,maxwav,1,n);*/
|
| free_vector(moisdc,1,n);
|
free_vector(moisdc,1,n);
|
| free_vector(andc,1,n);
|
free_vector(andc,1,n);
|
|
|
|
|
Line 1922 printf("Total number of individuals= %d,
|
Line 2304 printf("Total number of individuals= %d,
|
| concatwav(wav, dh, mw, s, agedc, agev, firstpass, lastpass, imx, nlstate, stepm);
|
concatwav(wav, dh, mw, s, agedc, agev, firstpass, lastpass, imx, nlstate, stepm);
|
|
|
|
|
|
|
| Tcode=ivector(1,100);
|
Tcode=ivector(1,100);
|
| nbcode=imatrix(1,nvar,1,8);
|
nbcode=imatrix(0,NCOVMAX,0,NCOVMAX);
|
| ncodemax[1]=1;
|
ncodemax[1]=1;
|
| if (cptcovn > 0) tricode(Tvar,nbcode,imx);
|
if (cptcovn > 0) tricode(Tvar,nbcode,imx);
|
|
|
|
| codtab=imatrix(1,100,1,10);
|
codtab=imatrix(1,100,1,10);
|
| h=0;
|
h=0;
|
| m=pow(2,cptcovn);
|
m=pow(2,cptcoveff);
|
|
|
|
| for(k=1;k<=cptcovn; k++){
|
for(k=1;k<=cptcoveff; k++){
|
| for(i=1; i <=(m/pow(2,k));i++){
|
for(i=1; i <=(m/pow(2,k));i++){
|
| for(j=1; j <= ncodemax[k]; j++){
|
for(j=1; j <= ncodemax[k]; j++){
|
| for(cpt=1; cpt <=(m/pow(2,cptcovn+1-k)); cpt++){
|
for(cpt=1; cpt <=(m/pow(2,cptcoveff+1-k)); cpt++){
|
| h++;
|
h++;
|
| if (h>m) h=1;codtab[h][k]=j;
|
if (h>m) h=1;codtab[h][k]=j;
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
|
|
| /*for(i=1; i <=m ;i++){
|
|
| for(k=1; k <=cptcovn; k++){
|
|
| printf("i=%d k=%d %d ",i,k,codtab[i][k]);
|
|
| }
|
|
| printf("\n");
|
|
| }*/
|
|
| /*scanf("%d",i);*/
|
|
|
|
|
| /* Calculates basic frequencies. Computes observed prevalence at single age
|
/* Calculates basic frequencies. Computes observed prevalence at single age
|
| and prints on file fileres'p'. */
|
and prints on file fileres'p'. */
|
| freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax);
|
|
|
|
|
|
|
|
| /*scanf("%d ",i);*/
|
|
|
|
|
|
|
|
| |
|
| |
|
| pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
| oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
| newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
newms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
| savms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
savms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
|
| oldm=oldms; newm=newms; savm=savms; /* Keeps fixed addresses to free */
|
oldm=oldms; newm=newms; savm=savms; /* Keeps fixed addresses to free */
|
|
|
|
| /* For Powell, parameters are in a vector p[] starting at p[1]
|
/* For Powell, parameters are in a vector p[] starting at p[1]
|
| so we point p on param[1][1] so that p[1] maps on param[1][1][1] */
|
so we point p on param[1][1] so that p[1] maps on param[1][1][1] */
|
| p=param[1][1]; /* *(*(*(param +1)+1)+0) */
|
p=param[1][1]; /* *(*(*(param +1)+1)+0) */
|
|
|
|
| mlikeli(ficres,p, npar, ncovmodel, nlstate, ftol, func);
|
|
|
|
|
| |
if(mle==1){
|
| |
mlikeli(ficres,p, npar, ncovmodel, nlstate, ftol, func);
|
| |
}
|
|
|
|
| /*--------- results files --------------*/
|
/*--------- results files --------------*/
|
| fprintf(ficres,"\ntitle=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model);
|
fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model);
|
|
|
|
| |
|
| jk=1;
|
jk=1;
|
| fprintf(ficres,"# Parameters\n");
|
fprintf(ficres,"# Parameters\n");
|
| printf("# Parameters\n");
|
printf("# Parameters\n");
|
|
Line 1993 Tcode=ivector(1,100);
|
Line 2366 Tcode=ivector(1,100);
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
|
if(mle==1){
|
| /* Computing hessian and covariance matrix */
|
/* Computing hessian and covariance matrix */
|
| ftolhess=ftol; /* Usually correct */
|
ftolhess=ftol; /* Usually correct */
|
| hesscov(matcov, p, npar, delti, ftolhess, func);
|
hesscov(matcov, p, npar, delti, ftolhess, func);
|
| |
}
|
| fprintf(ficres,"# Scales\n");
|
fprintf(ficres,"# Scales\n");
|
| printf("# Scales\n");
|
printf("# Scales\n");
|
| for(i=1,jk=1; i <=nlstate; i++){
|
for(i=1,jk=1; i <=nlstate; i++){
|
|
Line 2013 Tcode=ivector(1,100);
|
Line 2387 Tcode=ivector(1,100);
|
| fprintf(ficres,"\n");
|
fprintf(ficres,"\n");
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
|
|
| k=1;
|
k=1;
|
| fprintf(ficres,"# Covariance\n");
|
fprintf(ficres,"# Covariance\n");
|
|
Line 2049 Tcode=ivector(1,100);
|
Line 2423 Tcode=ivector(1,100);
|
| fage = agemax;
|
fage = agemax;
|
| }
|
}
|
|
|
|
| fprintf(ficres,"# agemin agemax for life expectancy, bage fage (if mle==0 ie no data nor Max likelihood).\n");
|
fprintf(ficres,"# agemin agemax for life expectancy.\n");
|
| |
|
| fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
| /*------------ gnuplot -------------*/
|
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
| |
|
| |
while((c=getc(ficpar))=='#' && c!= EOF){
|
| |
ungetc(c,ficpar);
|
| |
fgets(line, MAXLINE, ficpar);
|
| |
puts(line);
|
| |
fputs(line,ficparo);
|
| |
}
|
| |
ungetc(c,ficpar);
|
| |
|
| |
fscanf(ficpar,"begin-prev-date=%lf/%lf/%lf end-prev-date=%lf/%lf/%lf mob_average=%d\n",&jprev1, &mprev1,&anprev1,&jprev2, &mprev2,&anprev2,&mobilav);
|
| |
fprintf(ficparo,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mob_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav);
|
| |
fprintf(ficres,"begin-prev-date=%.lf/%.lf/%.lf end-prev-date=%.lf/%.lf/%.lf mob_average=%d\n",jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,mobilav);
|
| |
|
| |
while((c=getc(ficpar))=='#' && c!= EOF){
|
| |
ungetc(c,ficpar);
|
| |
fgets(line, MAXLINE, ficpar);
|
| |
puts(line);
|
| |
fputs(line,ficparo);
|
| |
}
|
| |
ungetc(c,ficpar);
|
| |
|
| |
|
| |
dateprev1=anprev1+mprev1/12.+jprev1/365.;
|
| |
dateprev2=anprev2+mprev2/12.+jprev2/365.;
|
| |
|
| |
fscanf(ficpar,"pop_based=%d\n",&popbased);
|
| |
fprintf(ficparo,"pop_based=%d\n",popbased);
|
| |
fprintf(ficres,"pop_based=%d\n",popbased);
|
| |
|
| |
while((c=getc(ficpar))=='#' && c!= EOF){
|
| |
ungetc(c,ficpar);
|
| |
fgets(line, MAXLINE, ficpar);
|
| |
puts(line);
|
| |
fputs(line,ficparo);
|
| |
}
|
| |
ungetc(c,ficpar);
|
| |
fscanf(ficpar,"popforecast=%d popfile=%s starting-proj-date=%lf/%lf/%lf final-proj-date=%lf/%lf/%lf\n",&popforecast,popfile,&jproj1,&mproj1,&anproj1,&jproj2,&mproj2,&anproj2);
|
| |
fprintf(ficparo,"popforecast=%d popfile=%s starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf\n",popforecast,popfile,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2);
|
| |
fprintf(ficres,"popforecast=%d popfile=%s starting-proj-date=%.lf/%.lf/%.lf final-proj-date=%.lf/%.lf/%.lf\n",popforecast,popfile,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2);
|
| |
|
| |
freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2);
|
| |
|
| |
/*------------ gnuplot -------------*/
|
| chdir(pathcd);
|
chdir(pathcd);
|
| if((ficgp=fopen("graph.plt","w"))==NULL) {
|
if((ficgp=fopen("graph.plt","w"))==NULL) {
|
| printf("Problem with file graph.plt");goto end;
|
printf("Problem with file graph.gp");goto end;
|
| }
|
}
|
| #ifdef windows
|
#ifdef windows
|
| fprintf(ficgp,"cd \"%s\" \n",pathc);
|
fprintf(ficgp,"cd \"%s\" \n",pathc);
|
| #endif
|
#endif
|
| m=pow(2,cptcovn);
|
m=pow(2,cptcoveff);
|
|
|
|
| /* 1eme*/
|
/* 1eme*/
|
| for (cpt=1; cpt<= nlstate ; cpt ++) {
|
for (cpt=1; cpt<= nlstate ; cpt ++) {
|
|
Line 2126 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
Line 2544 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
|
|
|
| /*3eme*/
|
/*3eme*/
|
|
|
|
| for (k1=1; k1<= m ; k1 ++) {
|
for (k1=1; k1<= m ; k1 ++) {
|
| for (cpt=1; cpt<= nlstate ; cpt ++) {
|
for (cpt=1; cpt<= nlstate ; cpt ++) {
|
| k=2+nlstate*(cpt-1);
|
k=2+nlstate*(cpt-1);
|
| fprintf(ficgp,"set ter gif small size 400,300\nplot [%.f:%.f] \"e%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",agemin,fage,fileres,k1-1,k1-1,k,cpt);
|
fprintf(ficgp,"set ter gif small size 400,300\nplot [%.f:%.f] \"e%s\" every :::%d::%d u 1:%d t \"e%d1\" w l",agemin,fage,fileres,k1-1,k1-1,k,cpt);
|
|
Line 2135 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
Line 2553 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
| }
|
}
|
| fprintf(ficgp,"\nset out \"exp%s%d%d.gif\" \nreplot\n\n",strtok(optionfile, "."),cpt,k1);
|
fprintf(ficgp,"\nset out \"exp%s%d%d.gif\" \nreplot\n\n",strtok(optionfile, "."),cpt,k1);
|
| }
|
}
|
| }
|
}
|
|
|
|
| /* CV preval stat */
|
/* CV preval stat */
|
| for (k1=1; k1<= m ; k1 ++) {
|
for (k1=1; k1<= m ; k1 ++) {
|
| for (cpt=1; cpt<nlstate ; cpt ++) {
|
for (cpt=1; cpt<nlstate ; cpt ++) {
|
| k=3;
|
k=3;
|
| fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \nset ter gif small size 400,300\nplot [%.f:%.f] \"pij%s\" u ($1==%d ? ($3):1/0):($%d/($%d",agemin,agemax,fileres,k1,k+cpt+1,k+1);
|
fprintf(ficgp,"set xlabel \"Age\" \nset ylabel \"Probability\" \nset ter gif small size 400,300\nplot [%.f:%.f] \"pij%s\" u ($1==%d ? ($3):1/0):($%d/($%d",agemin,agemax,fileres,k1,k+cpt+1,k+1);
|
|
Line 2155 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
Line 2573 fprintf(ficgp,"\nset out \"v%s%d%d.gif\"
|
| fprintf(ficgp,")) t\"prev(%d,%d)\" w l\n",cpt+1,cpt+1);
|
fprintf(ficgp,")) t\"prev(%d,%d)\" w l\n",cpt+1,cpt+1);
|
| fprintf(ficgp,"set out \"p%s%d%d.gif\" \nreplot\n\n",strtok(optionfile, "."),cpt,k1);
|
fprintf(ficgp,"set out \"p%s%d%d.gif\" \nreplot\n\n",strtok(optionfile, "."),cpt,k1);
|
| }
|
}
|
| }
|
}
|
|
|
|
| /* proba elementaires */
|
/* proba elementaires */
|
| for(i=1,jk=1; i <=nlstate; i++){
|
for(i=1,jk=1; i <=nlstate; i++){
|
| for(k=1; k <=(nlstate+ndeath); k++){
|
for(k=1; k <=(nlstate+ndeath); k++){
|
| if (k != i) {
|
if (k != i) {
|
| /* fprintf(ficgp,"%1d%1d ",i,k);*/
|
|
| for(j=1; j <=ncovmodel; j++){
|
for(j=1; j <=ncovmodel; j++){
|
| fprintf(ficgp,"%s%1d%1d=%f ",alph[j],i,k,p[jk]);
|
/*fprintf(ficgp,"%s%1d%1d=%f ",alph[j],i,k,p[jk]);*/
|
| |
/*fprintf(ficgp,"%s",alph[1]);*/
|
| |
fprintf(ficgp,"p%d=%f ",jk,p[jk]);
|
| jk++;
|
jk++;
|
| fprintf(ficgp,"\n");
|
fprintf(ficgp,"\n");
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| |
|
| for(jk=1; jk <=m; jk++) {
|
for(jk=1; jk <=m; jk++) {
|
| fprintf(ficgp,"\nset ter gif small size 400,300\nset log y\nplot [%.f:%.f] ",agemin,agemax);
|
fprintf(ficgp,"\nset ter gif small size 400,300\nset log y\nplot [%.f:%.f] ",agemin,agemax);
|
| for(i=1; i <=nlstate; i++) {
|
i=1;
|
| for(k=1; k <=(nlstate+ndeath); k++){
|
for(k2=1; k2<=nlstate; k2++) {
|
| if (k != i) {
|
k3=i;
|
| fprintf(ficgp," exp(a%d%d+b%d%d*x",i,k,i,k);
|
for(k=1; k<=(nlstate+ndeath); k++) {
|
| for(j=3; j <=ncovmodel; j++)
|
if (k != k2){
|
| fprintf(ficgp,"+%s%d%d*%d",alph[j],i,k,nbcode[Tvar[j-2]][codtab[jk][j-2]]);
|
fprintf(ficgp," exp(p%d+p%d*x",i,i+1);
|
| fprintf(ficgp,")/(1");
|
ij=1;
|
| for(k1=1; k1 <=(nlstate+ndeath); k1++)
|
for(j=3; j <=ncovmodel; j++) {
|
| if (k1 != i) {
|
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) {
|
| fprintf(ficgp,"+exp(a%d%d+b%d%d*x",i,k1,i,k1);
|
fprintf(ficgp,"+p%d*%d*x",i+j-1,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]);
|
| for(j=3; j <=ncovmodel; j++)
|
ij++;
|
| fprintf(ficgp,"+%s%d%d*%d",alph[j],i,k,nbcode[Tvar[j-2]][codtab[jk][j-2]]);
|
|
| fprintf(ficgp,")");
|
|
| }
|
}
|
| fprintf(ficgp,") t \"p%d%d\" ", i,k);
|
else
|
| if ((i+k)!= (nlstate*2+ndeath)) fprintf(ficgp,",");
|
fprintf(ficgp,"+p%d*%d",i+j-1,nbcode[Tvar[j-2]][codtab[jk][j-2]]);
|
| }
|
}
|
| }
|
fprintf(ficgp,")/(1");
|
| }
|
|
| fprintf(ficgp,"\nset out \"pe%s%d.gif\" \nreplot\n\n",strtok(optionfile, "."),jk);
|
for(k1=1; k1 <=nlstate; k1++){
|
| |
fprintf(ficgp,"+exp(p%d+p%d*x",k3+(k1-1)*ncovmodel,k3+(k1-1)*ncovmodel+1);
|
| |
ij=1;
|
| |
for(j=3; j <=ncovmodel; j++){
|
| |
if(((j-2)==Tage[ij]) &&(ij <=cptcovage)) {
|
| |
fprintf(ficgp,"+p%d*%d*x",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][Tvar[j-2]]]);
|
| |
ij++;
|
| |
}
|
| |
else
|
| |
fprintf(ficgp,"+p%d*%d",k3+(k1-1)*ncovmodel+1+j-2,nbcode[Tvar[j-2]][codtab[jk][j-2]]);
|
| |
}
|
| |
fprintf(ficgp,")");
|
| |
}
|
| |
fprintf(ficgp,") t \"p%d%d\" ", k2,k);
|
| |
if ((k+k2)!= (nlstate*2+ndeath)) fprintf(ficgp,",");
|
| |
i=i+ncovmodel;
|
| |
}
|
| |
}
|
| |
}
|
| |
fprintf(ficgp,"\nset out \"pe%s%d.gif\" \nreplot\n\n",strtok(optionfile, "."),jk);
|
| }
|
}
|
|
|
|
| fclose(ficgp);
|
fclose(ficgp);
|
|
|
|
| chdir(path);
|
chdir(path);
|
| free_matrix(agev,1,maxwav,1,imx);
|
|
| free_ivector(wav,1,imx);
|
free_ivector(wav,1,imx);
|
| free_imatrix(dh,1,lastpass-firstpass+1,1,imx);
|
free_imatrix(dh,1,lastpass-firstpass+1,1,imx);
|
| free_imatrix(mw,1,lastpass-firstpass+1,1,imx);
|
free_imatrix(mw,1,lastpass-firstpass+1,1,imx);
|
|
|
|
| free_imatrix(s,1,maxwav+1,1,n);
|
|
|
|
|
|
|
|
| free_ivector(num,1,n);
|
free_ivector(num,1,n);
|
| free_vector(agedc,1,n);
|
free_vector(agedc,1,n);
|
| free_vector(weight,1,n);
|
|
| /*free_matrix(covar,1,NCOVMAX,1,n);*/
|
/*free_matrix(covar,1,NCOVMAX,1,n);*/
|
| fclose(ficparo);
|
fclose(ficparo);
|
| fclose(ficres);
|
fclose(ficres);
|
| }
|
/* }*/
|
|
|
|
| /*________fin mle=1_________*/
|
/*________fin mle=1_________*/
|
|
|
|
|
Line 2227 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
Line 2659 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
| }
|
}
|
| ungetc(c,ficpar);
|
ungetc(c,ficpar);
|
|
|
|
|
|
|
| fscanf(ficpar,"agemin=%lf agemax=%lf bage=%lf fage=%lf\n",&agemin,&agemax, &bage, &fage);
|
fscanf(ficpar,"agemin=%lf agemax=%lf bage=%lf fage=%lf\n",&agemin,&agemax, &bage, &fage);
|
| printf("agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax, bage, fage);
|
printf("agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax, bage, fage);
|
| fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
| /*--------- index.htm --------*/
|
/*--------- index.htm --------*/
|
|
|
|
| if((fichtm=fopen("index.htm","w"))==NULL) {
|
strcpy(optionfilehtm,optionfile);
|
| printf("Problem with index.htm \n");goto end;
|
strcat(optionfilehtm,".htm");
|
| |
if((fichtm=fopen(optionfilehtm,"w"))==NULL) {
|
| |
printf("Problem with %s \n",optionfilehtm);goto end;
|
| }
|
}
|
|
|
|
| fprintf(fichtm,"<body><ul> Imach, Version 0.63<hr> <li>Outputs files<br><br>\n
|
fprintf(fichtm,"<body><ul> <font size=\"6\">Imach, Version 0.7 </font> <hr size=\"2\" color=\"#EC5E5E\">
|
| |
Titre=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>
|
| |
Total number of observations=%d <br>
|
| |
Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf<br>
|
| |
<hr size=\"2\" color=\"#EC5E5E\">
|
| |
<li>Outputs files<br><br>\n
|
| - Observed prevalence in each state: <a href=\"p%s\">p%s</a> <br>\n
|
- Observed prevalence in each state: <a href=\"p%s\">p%s</a> <br>\n
|
| - Estimated parameters and the covariance matrix: <a href=\"%s\">%s</a> <br>
|
- Estimated parameters and the covariance matrix: <a href=\"%s\">%s</a> <br>
|
| - Stationary prevalence in each state: <a href=\"pl%s\">pl%s</a> <br>
|
- Stationary prevalence in each state: <a href=\"pl%s\">pl%s</a> <br>
|
|
Line 2246 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
Line 2684 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
| - Life expectancies by age and initial health status: <a href=\"e%s\">e%s</a> <br>
|
- Life expectancies by age and initial health status: <a href=\"e%s\">e%s</a> <br>
|
| - Variances of life expectancies by age and initial health status: <a href=\"v%s\">v%s</a><br>
|
- Variances of life expectancies by age and initial health status: <a href=\"v%s\">v%s</a><br>
|
| - Health expectancies with their variances: <a href=\"t%s\">t%s</a> <br>
|
- Health expectancies with their variances: <a href=\"t%s\">t%s</a> <br>
|
| - Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br><br>",fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);
|
- Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br>
|
| |
- Prevalences and population forecasting: <a href=\"f%s\">f%s</a> <br>
|
| |
<br>",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);
|
|
|
|
| fprintf(fichtm," <li>Graphs</li>\n<p>");
|
fprintf(fichtm," <li>Graphs</li><p>");
|
|
|
|
| m=cptcovn;
|
m=cptcoveff;
|
| if (cptcovn < 1) {m=1;ncodemax[1]=1;}
|
if (cptcovn < 1) {m=1;ncodemax[1]=1;}
|
|
|
|
| j1=0;
|
j1=0;
|
|
Line 2258 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
Line 2698 fprintf(ficgp,"\nset out \"pe%s%d.gif\"
|
| for(i1=1; i1<=ncodemax[k1];i1++){
|
for(i1=1; i1<=ncodemax[k1];i1++){
|
| j1++;
|
j1++;
|
| if (cptcovn > 0) {
|
if (cptcovn > 0) {
|
| fprintf(fichtm,"<hr>************ Results for covariates");
|
fprintf(fichtm,"<hr size=\"2\" color=\"#EC5E5E\">************ Results for covariates");
|
| for (cpt=1; cpt<=cptcovn;cpt++)
|
for (cpt=1; cpt<=cptcoveff;cpt++)
|
| fprintf(fichtm," V%d=%d ",Tvar[cpt],nbcode[Tvar[cpt]][codtab[j1][cpt]]);
|
fprintf(fichtm," V%d=%d ",Tvaraff[cpt],nbcode[Tvaraff[cpt]][codtab[j1][cpt]]);
|
| fprintf(fichtm," ************\n<hr>");
|
fprintf(fichtm," ************\n<hr size=\"2\" color=\"#EC5E5E\">");
|
| }
|
}
|
| fprintf(fichtm,"<br>- Probabilities: pe%s%d.gif<br>
|
fprintf(fichtm,"<br>- Probabilities: pe%s%d.gif<br>
|
| <img src=\"pe%s%d.gif\">",strtok(optionfile, "."),j1,strtok(optionfile, "."),j1);
|
<img src=\"pe%s%d.gif\">",strtok(optionfile, "."),j1,strtok(optionfile, "."),j1);
|
|
Line 2276 interval) in state (%d): v%s%d%d.gif <br
|
Line 2716 interval) in state (%d): v%s%d%d.gif <br
|
| }
|
}
|
| for(cpt=1; cpt<=nlstate;cpt++) {
|
for(cpt=1; cpt<=nlstate;cpt++) {
|
| fprintf(fichtm,"\n<br>- Health life expectancies by age and initial health state (%d): exp%s%d%d.gif <br>
|
fprintf(fichtm,"\n<br>- Health life expectancies by age and initial health state (%d): exp%s%d%d.gif <br>
|
| <img src=\"ex%s%d%d.gif\">",cpt,strtok(optionfile, "."),cpt,j1,strtok(optionfile, "."),cpt,j1);
|
<img src=\"exp%s%d%d.gif\">",cpt,strtok(optionfile, "."),cpt,j1,strtok(optionfile, "."),cpt,j1);
|
| }
|
}
|
| fprintf(fichtm,"\n<br>- Total life expectancy by age and
|
fprintf(fichtm,"\n<br>- Total life expectancy by age and
|
| health expectancies in states (1) and (2): e%s%d.gif<br>
|
health expectancies in states (1) and (2): e%s%d.gif<br>
|
|
Line 2309 fclose(fichtm);
|
Line 2749 fclose(fichtm);
|
| agebase=agemin;
|
agebase=agemin;
|
| agelim=agemax;
|
agelim=agemax;
|
| ftolpl=1.e-10;
|
ftolpl=1.e-10;
|
| i1=cptcovn;
|
i1=cptcoveff;
|
| if (cptcovn < 1){i1=1;}
|
if (cptcovn < 1){i1=1;}
|
|
|
|
| for(cptcov=1;cptcov<=i1;cptcov++){
|
for(cptcov=1;cptcov<=i1;cptcov++){
|
| for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
| k=k+1;
|
k=k+1;
|
| /*printf("cptcov=%d cptcod=%d codtab=%d nbcode=%d\n",cptcov, cptcod,Tcode[cptcode],codtab[cptcod][cptcov]);*/
|
/*printf("cptcov=%d cptcod=%d codtab=%d nbcode=%d\n",cptcov, cptcod,Tcode[cptcode],codtab[cptcod][cptcov]);*/
|
| fprintf(ficrespl,"\n#****** ");
|
fprintf(ficrespl,"\n#******");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficrespl,"V%d=%d ",Tvar[j],nbcode[Tvar[j]][codtab[k][j]]);
|
fprintf(ficrespl," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
|
| fprintf(ficrespl,"******\n");
|
fprintf(ficrespl,"******\n");
|
|
|
|
| for (age=agebase; age<=agelim; age++){
|
for (age=agebase; age<=agelim; age++){
|
|
Line 2331 fclose(fichtm);
|
Line 2771 fclose(fichtm);
|
| }
|
}
|
| }
|
}
|
| fclose(ficrespl);
|
fclose(ficrespl);
|
| |
|
| /*------------- h Pij x at various ages ------------*/
|
/*------------- h Pij x at various ages ------------*/
|
|
|
|
| strcpy(filerespij,"pij"); strcat(filerespij,fileres);
|
strcpy(filerespij,"pij"); strcat(filerespij,fileres);
|
|
Line 2340 fclose(fichtm);
|
Line 2781 fclose(fichtm);
|
| printf("Computing pij: result on file '%s' \n", filerespij);
|
printf("Computing pij: result on file '%s' \n", filerespij);
|
|
|
|
| stepsize=(int) (stepm+YEARM-1)/YEARM;
|
stepsize=(int) (stepm+YEARM-1)/YEARM;
|
| if (stepm<=24) stepsize=2;
|
/*if (stepm<=24) stepsize=2;*/
|
|
|
|
| agelim=AGESUP;
|
agelim=AGESUP;
|
| hstepm=stepsize*YEARM; /* Every year of age */
|
hstepm=stepsize*YEARM; /* Every year of age */
|
|
Line 2351 fclose(fichtm);
|
Line 2792 fclose(fichtm);
|
| for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
| k=k+1;
|
k=k+1;
|
| fprintf(ficrespij,"\n#****** ");
|
fprintf(ficrespij,"\n#****** ");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficrespij,"V%d=%d ",Tvar[j],nbcode[Tvar[j]][codtab[k][j]]);
|
fprintf(ficrespij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
|
| fprintf(ficrespij,"******\n");
|
fprintf(ficrespij,"******\n");
|
|
|
|
| for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */
|
for (agedeb=fage; agedeb>=bage; agedeb--){ /* If stepm=6 months */
|
|
Line 2379 fclose(fichtm);
|
Line 2820 fclose(fichtm);
|
| }
|
}
|
| }
|
}
|
|
|
|
| |
/* varprob(fileres, matcov, p, delti, nlstate, (int) bage, (int) fage,k);*/
|
| |
|
| fclose(ficrespij);
|
fclose(ficrespij);
|
|
|
|
| |
/*---------- Forecasting ------------------*/
|
| |
calagedate=(anproj1+mproj1/12.+jproj1/365.-dateintmean)*YEARM;
|
| |
|
| |
prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2, calagedate);
|
| |
|
| |
|
| |
strcpy(fileresf,"f");
|
| |
strcat(fileresf,fileres);
|
| |
if((ficresf=fopen(fileresf,"w"))==NULL) {
|
| |
printf("Problem with forecast resultfile: %s\n", fileresf);goto end;
|
| |
}
|
| |
printf("Computing forecasting: result on file '%s' \n", fileresf);
|
| |
|
| |
free_matrix(mint,1,maxwav,1,n);
|
| |
free_matrix(anint,1,maxwav,1,n);
|
| |
free_matrix(agev,1,maxwav,1,imx);
|
| |
/* Mobile average */
|
| |
|
| |
if (cptcoveff==0) ncodemax[cptcoveff]=1;
|
| |
|
| |
if (mobilav==1) {
|
| |
mobaverage= ma3x(1, AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
| |
for (agedeb=bage+3; agedeb<=fage-2; agedeb++)
|
| |
for (i=1; i<=nlstate;i++)
|
| |
for (cptcod=1;cptcod<=ncodemax[cptcov];cptcod++)
|
| |
mobaverage[(int)agedeb][i][cptcod]=0.;
|
| |
|
| |
for (agedeb=bage+4; agedeb<=fage; agedeb++){
|
| |
for (i=1; i<=nlstate;i++){
|
| |
for (cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){
|
| |
for (cpt=0;cpt<=4;cpt++){
|
| |
mobaverage[(int)agedeb-2][i][cptcod]=mobaverage[(int)agedeb-2][i][cptcod]+probs[(int)agedeb-cpt][i][cptcod];
|
| |
}
|
| |
mobaverage[(int)agedeb-2][i][cptcod]=mobaverage[(int)agedeb-2][i][cptcod]/5;
|
| |
}
|
| |
}
|
| |
}
|
| |
}
|
| |
|
| |
stepsize=(int) (stepm+YEARM-1)/YEARM;
|
| |
if (stepm<=12) stepsize=1;
|
| |
|
| |
agelim=AGESUP;
|
| |
/*hstepm=stepsize*YEARM; *//* Every year of age */
|
| |
hstepm=1;
|
| |
hstepm=hstepm/stepm; /* Typically 2 years, = 2 years/6 months = 4 */
|
| |
yp1=modf(dateintmean,&yp);
|
| |
anprojmean=yp;
|
| |
yp2=modf((yp1*12),&yp);
|
| |
mprojmean=yp;
|
| |
yp1=modf((yp2*30.5),&yp);
|
| |
jprojmean=yp;
|
| |
if(jprojmean==0) jprojmean=1;
|
| |
if(mprojmean==0) jprojmean=1;
|
| |
|
| |
fprintf(ficresf,"# Estimated date of observed prevalence: %.lf/%.lf/%.lf ",jprojmean,mprojmean,anprojmean);
|
| |
|
| |
if (popforecast==1) {
|
| |
if((ficpop=fopen(popfile,"r"))==NULL) {
|
| |
printf("Problem with population file : %s\n",popfile);goto end;
|
| |
}
|
| |
popage=ivector(0,AGESUP);
|
| |
popeffectif=vector(0,AGESUP);
|
| |
popcount=vector(0,AGESUP);
|
| |
|
| |
i=1;
|
| |
while ((c=fscanf(ficpop,"%d %lf\n",&popage[i],&popcount[i])) != EOF)
|
| |
{
|
| |
i=i+1;
|
| |
}
|
| |
imx=i;
|
| |
|
| |
for (i=1; i<imx;i++) popeffectif[popage[i]]=popcount[i];
|
| |
}
|
| |
|
| |
for(cptcov=1;cptcov<=i1;cptcov++){
|
| |
for(cptcod=1;cptcod<=ncodemax[cptcoveff];cptcod++){
|
| |
k=k+1;
|
| |
fprintf(ficresf,"\n#******");
|
| |
for(j=1;j<=cptcoveff;j++) {
|
| |
fprintf(ficresf," V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
|
| |
}
|
| |
fprintf(ficresf,"******\n");
|
| |
fprintf(ficresf,"# StartingAge FinalAge");
|
| |
for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j);
|
| |
if (popforecast==1) fprintf(ficresf," [Population]");
|
| |
|
| |
for (cpt=0; cpt<=5;cpt++) {
|
| |
fprintf(ficresf,"\n");
|
| |
fprintf(ficresf,"\n# Forecasting at date %.lf/%.lf/%.lf ",jproj1,mproj1,anproj1+cpt);
|
| |
for (agedeb=(fage-((int)calagedate %12/12.)); agedeb>=(bage-((int)calagedate %12)/12.); agedeb--){ /* If stepm=6 months */
|
| |
nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm);
|
| |
nhstepm = nhstepm/hstepm;
|
| |
/*printf("agedeb=%.lf stepm=%d hstepm=%d nhstepm=%d \n",agedeb,stepm,hstepm,nhstepm);*/
|
| |
|
| |
p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
|
| |
oldm=oldms;savm=savms;
|
| |
hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k);
|
| |
|
| |
for (h=0; h<=nhstepm; h++){
|
| |
if (h==(int) (calagedate+YEARM*cpt)) {
|
| |
fprintf(ficresf,"\n %.f ",agedeb+h*hstepm/YEARM*stepm);
|
| |
}
|
| |
for(j=1; j<=nlstate+ndeath;j++) {
|
| |
kk1=0.;kk2=0;
|
| |
for(i=1; i<=nlstate;i++) {
|
| |
if (mobilav==1)
|
| |
kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb+1][i][cptcod];
|
| |
else {
|
| |
kk1=kk1+p3mat[i][j][h]*probs[(int)(agedeb+1)][i][cptcod];
|
| |
/* fprintf(ficresf," p3=%.3f p=%.3f ", p3mat[i][j][h], probs[(int)(agedeb)+1][i][cptcod]);*/
|
| |
}
|
| |
|
| |
if (popforecast==1) kk2=kk1*popeffectif[(int)agedeb];
|
| |
}
|
| |
|
| |
if (h==(int)(calagedate+12*cpt)){
|
| |
fprintf(ficresf," %.3f", kk1);
|
| |
|
| |
if (popforecast==1) fprintf(ficresf," [%.f]", kk2);
|
| |
}
|
| |
}
|
| |
}
|
| |
free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
|
| |
}
|
| |
}
|
| |
}
|
| |
}
|
| |
if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
| |
if (popforecast==1) {
|
| |
free_ivector(popage,0,AGESUP);
|
| |
free_vector(popeffectif,0,AGESUP);
|
| |
free_vector(popcount,0,AGESUP);
|
| |
}
|
| |
free_imatrix(s,1,maxwav+1,1,n);
|
| |
free_vector(weight,1,n);
|
| |
fclose(ficresf);
|
| /*---------- Health expectancies and variances ------------*/
|
/*---------- Health expectancies and variances ------------*/
|
|
|
|
| strcpy(filerest,"t");
|
strcpy(filerest,"t");
|
|
Line 2410 fclose(fichtm);
|
Line 2990 fclose(fichtm);
|
| for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
| k=k+1;
|
k=k+1;
|
| fprintf(ficrest,"\n#****** ");
|
fprintf(ficrest,"\n#****** ");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficrest,"V%d=%d ",Tvar[j],nbcode[Tvar[j]][codtab[k][j]]);
|
fprintf(ficrest,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
|
| fprintf(ficrest,"******\n");
|
fprintf(ficrest,"******\n");
|
|
|
|
| fprintf(ficreseij,"\n#****** ");
|
fprintf(ficreseij,"\n#****** ");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficreseij,"V%d=%d ",j,nbcode[j][codtab[k][j]]);
|
fprintf(ficreseij,"V%d=%d ",j,nbcode[j][codtab[k][j]]);
|
| fprintf(ficreseij,"******\n");
|
fprintf(ficreseij,"******\n");
|
|
|
|
| fprintf(ficresvij,"\n#****** ");
|
fprintf(ficresvij,"\n#****** ");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficresvij,"V%d=%d ",j,nbcode[j][codtab[k][j]]);
|
fprintf(ficresvij,"V%d=%d ",j,nbcode[j][codtab[k][j]]);
|
| fprintf(ficresvij,"******\n");
|
fprintf(ficresvij,"******\n");
|
|
|
|
|
Line 2440 fclose(fichtm);
|
Line 3020 fclose(fichtm);
|
| epj=vector(1,nlstate+1);
|
epj=vector(1,nlstate+1);
|
| for(age=bage; age <=fage ;age++){
|
for(age=bage; age <=fage ;age++){
|
| prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k);
|
prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k);
|
| |
if (popbased==1) {
|
| |
for(i=1; i<=nlstate;i++)
|
| |
prlim[i][i]=probs[(int)age][i][k];
|
| |
}
|
| |
|
| fprintf(ficrest," %.0f",age);
|
fprintf(ficrest," %.0f",age);
|
| for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){
|
for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){
|
| for(i=1, epj[j]=0.;i <=nlstate;i++) {
|
for(i=1, epj[j]=0.;i <=nlstate;i++) {
|
|
Line 2459 fclose(fichtm);
|
Line 3044 fclose(fichtm);
|
| }
|
}
|
| }
|
}
|
|
|
|
| |
|
| |
|
| |
|
| fclose(ficreseij);
|
fclose(ficreseij);
|
| fclose(ficresvij);
|
fclose(ficresvij);
|
| fclose(ficrest);
|
fclose(ficrest);
|
| fclose(ficpar);
|
fclose(ficpar);
|
| free_vector(epj,1,nlstate+1);
|
free_vector(epj,1,nlstate+1);
|
| /*scanf("%d ",i); */
|
/* scanf("%d ",i); */
|
|
|
|
| /*------- Variance limit prevalence------*/
|
/*------- Variance limit prevalence------*/
|
|
|
|
|
Line 2481 strcpy(fileresvpl,"vpl");
|
Line 3069 strcpy(fileresvpl,"vpl");
|
| for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){
|
| k=k+1;
|
k=k+1;
|
| fprintf(ficresvpl,"\n#****** ");
|
fprintf(ficresvpl,"\n#****** ");
|
| for(j=1;j<=cptcovn;j++)
|
for(j=1;j<=cptcoveff;j++)
|
| fprintf(ficresvpl,"V%d=%d ",Tvar[j],nbcode[Tvar[j]][codtab[k][j]]);
|
fprintf(ficresvpl,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtab[k][j]]);
|
| fprintf(ficresvpl,"******\n");
|
fprintf(ficresvpl,"******\n");
|
|
|
|
| varpl=matrix(1,nlstate,(int) bage, (int) fage);
|
varpl=matrix(1,nlstate,(int) bage, (int) fage);
|
|
Line 2504 strcpy(fileresvpl,"vpl");
|
Line 3092 strcpy(fileresvpl,"vpl");
|
| free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
| free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
| free_matrix(savms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
free_matrix(savms, 1,nlstate+ndeath,1,nlstate+ndeath);
|
|
|
|
| free_matrix(matcov,1,npar,1,npar);
|
free_matrix(matcov,1,npar,1,npar);
|
| free_vector(delti,1,npar);
|
free_vector(delti,1,npar);
|
|
|
|
|
Line 2517 strcpy(fileresvpl,"vpl");
|
Line 3105 strcpy(fileresvpl,"vpl");
|
| /*printf("Total time was %d uSec.\n", total_usecs);*/
|
/*printf("Total time was %d uSec.\n", total_usecs);*/
|
| /*------ End -----------*/
|
/*------ End -----------*/
|
|
|
|
| |
|
| end:
|
end:
|
| #ifdef windows
|
#ifdef windows
|
| chdir(pathcd);
|
chdir(pathcd);
|
| #endif
|
#endif
|
| system("wgnuplot graph.plt");
|
|
| |
system("..\\gp37mgw\\wgnuplot graph.plt");
|
|
|
|
| #ifdef windows
|
#ifdef windows
|
| while (z[0] != 'q') {
|
while (z[0] != 'q') {
|
|
Line 2531 strcpy(fileresvpl,"vpl");
|
Line 3121 strcpy(fileresvpl,"vpl");
|
| if (z[0] == 'c') system("./imach");
|
if (z[0] == 'c') system("./imach");
|
| else if (z[0] == 'e') {
|
else if (z[0] == 'e') {
|
| chdir(path);
|
chdir(path);
|
| system("index.htm");
|
system(optionfilehtm);
|
| }
|
}
|
| else if (z[0] == 'q') exit(0);
|
else if (z[0] == 'q') exit(0);
|
| }
|
}
|
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