version 1.205, 2015/10/23 15:50:53
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version 1.208, 2015/11/17 14:31:57
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.208 2015/11/17 14:31:57 brouard |
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Summary: temporary |
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Revision 1.207 2015/10/27 17:36:57 brouard |
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*** empty log message *** |
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Revision 1.206 2015/10/24 07:14:11 brouard |
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*** empty log message *** |
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Revision 1.205 2015/10/23 15:50:53 brouard |
Revision 1.205 2015/10/23 15:50:53 brouard |
Summary: 0.98r3 some clarification for graphs on likelihood contributions |
Summary: 0.98r3 some clarification for graphs on likelihood contributions |
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Line 1960 double **prevalim(double **prlim, int nl
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Line 1969 double **prevalim(double **prlim, int nl
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{ |
{ |
/* Computes the prevalence limit in each live state at age x by left multiplying the unit |
/* Computes the prevalence limit in each live state at age x by left multiplying the unit |
matrix by transitions matrix until convergence is reached with precision ftolpl */ |
matrix by transitions matrix until convergence is reached with precision ftolpl */ |
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/* Wx= Wx-1 Px-1= Wx-2 Px-2 Px-1 = Wx-n Px-n ... Px-2 Px-1 I */ |
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/* Wx is row vector: population in state 1, population in state 2, population dead */ |
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/* or prevalence in state 1, prevalence in state 2, 0 */ |
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/* newm is the matrix after multiplications, its rows are identical at a factor */ |
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/* Initial matrix pimij */ |
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/* {0.85204250825084937, 0.13044499163996345, 0.017512500109187184, */ |
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/* 0.090851990222114765, 0.88271245433047185, 0.026435555447413338, */ |
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/* 0, 0 , 1} */ |
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/* |
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* and after some iteration: */ |
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/* {0.45504275246439968, 0.42731458730878791, 0.11764266022681241, */ |
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/* 0.45201005341706885, 0.42865420071559901, 0.11933574586733192, */ |
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/* 0, 0 , 1} */ |
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/* And prevalence by suppressing the deaths are close to identical rows in prlim: */ |
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/* {0.51571254859325999, 0.4842874514067399, */ |
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/* 0.51326036147820708, 0.48673963852179264} */ |
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/* If we start from prlim again, prlim tends to a constant matrix */ |
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int i, ii,j,k; |
int i, ii,j,k; |
double min, max, maxmin, maxmax,sumnew=0.; |
double min, max, maxmin, maxmax,sumnew=0.; |
/* double **matprod2(); */ /* test */ |
/* double **matprod2(); */ /* test */ |
double **out, cov[NCOVMAX+1], **pmij(); |
double **out, cov[NCOVMAX+1], **pmij(); |
double **newm; |
double **newm; |
double agefin, delaymax=100 ; /* Max number of years to converge */ |
double agefin, delaymax=100. ; /* 100 Max number of years to converge */ |
int ncvloop=0; |
int ncvloop=0; |
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for (ii=1;ii<=nlstate+ndeath;ii++) |
for (ii=1;ii<=nlstate+ndeath;ii++) |
Line 2020 double **prevalim(double **prlim, int nl
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Line 2046 double **prevalim(double **prlim, int nl
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} |
} |
maxmin=(max-min)/(max+min)*2; |
maxmin=(max-min)/(max+min)*2; |
maxmax=FMAX(maxmax,maxmin); |
maxmax=FMAX(maxmax,maxmin); |
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/* for(i=1; i<=nlstate; i++) { */ |
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/* sumnew=0.; */ |
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/* sumnew+=prlim[i][j]; */ |
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/* } */ |
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/* prmimj = sumnew/(float)nlstate; /\* Means of various prevalence limits. */ |
} /* j loop */ |
} /* j loop */ |
*ncvyear= (int)age- (int)agefin; |
*ncvyear= (int)age- (int)agefin; |
/* printf("maxmax=%lf maxmin=%lf ncvloop=%ld, age=%d, agefin=%d ncvyear=%d \n", maxmax, maxmin, ncvloop, (int)age, (int)agefin, *ncvyear); */ |
/* printf("maxmax=%lf maxmin=%lf ncvloop=%d, age=%d, agefin=%d ncvyear=%d \n", maxmax, maxmin, ncvloop, (int)age, (int)agefin, *ncvyear); */ |
if(maxmax < ftolpl){ |
if(maxmax < ftolpl){ |
/* printf("maxmax=%lf maxmin=%lf ncvloop=%ld, age=%d, agefin=%d ncvyear=%d \n", maxmax, maxmin, ncvloop, (int)age, (int)agefin, *ncvyear); */ |
/* printf("maxmax=%lf maxmin=%lf ncvloop=%ld, age=%d, agefin=%d ncvyear=%d \n", maxmax, maxmin, ncvloop, (int)age, (int)agefin, *ncvyear); */ |
return prlim; |
return prlim; |
} |
} |
} /* age loop */ |
} /* age loop */ |
printf("Warning: the stable prevalence at age %d did not converge with the required precision %g > ftolpl=%g. \n\ |
/* After some age loop it doesn't converge */ |
Earliest age to start was %d-%d=%d, ncvloop=%d, ncvyear=%d\n", (int)age, maxmax, ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, *ncvyear); |
printf("Warning: the stable prevalence at age %d did not converge with the required precision %g > ftolpl=%g within %.0f years. \n\ |
/* Try to lower 'ftol', for example from 1.e-8 to 6.e-9.\n", ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, (int)age-(int)agefin); */ |
Earliest age to start was %d-%d=%d, ncvloop=%d, ncvyear=%d\n", (int)age, maxmax, ftolpl, delaymax, (int)age, (int)delaymax, (int)agefin, ncvloop, *ncvyear); |
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/* printf(" age= %d newm\n",(int)age); */ |
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/* for(i=1; i<=nlstate+ndeath; i++) { */ |
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/* for(j=1;j<=nlstate+ndeath;j++){ */ |
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/* printf(" %lf", newm[i][j]); */ |
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/* } */ |
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/* printf("\n"); */ |
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/* } */ |
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/* printf("\n"); */ |
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/* printf("prlim\n"); */ |
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/* for(i=1; i<=nlstate; i++) { */ |
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/* sumnew=0; */ |
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/* for(k=1; k<=ndeath; k++) sumnew+=newm[i][nlstate+k]; */ |
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/* for(j=1;j<=nlstate;j++){ */ |
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/* prlim[i][j]= newm[i][j]/(1-sumnew); */ |
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/* printf(" %lf", prlim[i][j]); */ |
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/* } */ |
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/* printf("\n"); */ |
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/* } */ |
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/* printf("\n"); */ |
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/* Try to lower 'ftol', for example from 1.e-8 to 6.e-9.\n", ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, (int)age-(int)agefin); */ |
return prlim; /* should not reach here */ |
return prlim; /* should not reach here */ |
} |
} |
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Line 2647 void likelione(FILE *ficres,double p[],
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Line 2699 void likelione(FILE *ficres,double p[],
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fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk); |
fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk); |
} |
} |
fprintf(ficresilk, "#individual(line's_record) count age s1 s2 wave# effective_wave# number_of_matrices_product pij weight weight/gpw -2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state(reweighted=-2ll*weightXnumber_of_contribs/sum_of_weights) and_total\n"); |
fprintf(ficresilk, "#individual(line's_record) count age s1 s2 wave# effective_wave# number_of_matrices_product pij weight weight/gpw -2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state(reweighted=-2ll*weightXnumber_of_contribs/sum_of_weights) and_total\n"); |
fprintf(ficresilk, "#num_i age i s1 s2 mi mw dh likeli weight %weight 2wlli out sav "); |
fprintf(ficresilk, "#num_i age i s1 s2 mi mw dh likeli weight %%weight 2wlli out sav "); |
/* i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */ |
/* i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */ |
for(k=1; k<=nlstate; k++) |
for(k=1; k<=nlstate; k++) |
fprintf(ficresilk," -2*gipw/gsw*weight*ll[%d]++",k); |
fprintf(ficresilk," -2*gipw/gsw*weight*ll[%d]++",k); |
Line 2662 void likelione(FILE *ficres,double p[],
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Line 2714 void likelione(FILE *ficres,double p[],
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else if(mle >=1) |
else if(mle >=1) |
fprintf(fichtm,"\n<br>File of contributions to the likelihood computed with optimized parameters mle = %d.",mle); |
fprintf(fichtm,"\n<br>File of contributions to the likelihood computed with optimized parameters mle = %d.",mle); |
fprintf(fichtm," You should at least run with mle >= 1 to get starting values corresponding to the optimized parameters in order to visualize the real contribution of each individual/wave: <a href=\"%s\">%s</a><br>\n",subdirf(fileresilk),subdirf(fileresilk)); |
fprintf(fichtm," You should at least run with mle >= 1 to get starting values corresponding to the optimized parameters in order to visualize the real contribution of each individual/wave: <a href=\"%s\">%s</a><br>\n",subdirf(fileresilk),subdirf(fileresilk)); |
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fprintf(fichtm,"<br>- The function drawn is -2Log(L) in Log scale: by state of origin <a href=\"%s-ori.png\">%s-ori.png</a><br> \ |
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<img src=\"%s-ori.png\">",subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_")); |
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fprintf(fichtm,"<br>- and by state of destination <a href=\"%s-dest.png\">%s-dest.png</a><br> \ |
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<img src=\"%s-dest.png\">",subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_")); |
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fflush(fichtm); |
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for (k=1; k<= nlstate ; k++) { |
for (k=1; k<= nlstate ; k++) { |
fprintf(fichtm,"<br>- Probability p%dj by origin %d and destination j <a href=\"%s-p%dj.png\">%s-p%dj.png</a><br> \ |
fprintf(fichtm,"<br>- Probability p%dj by origin %d and destination j <a href=\"%s-p%dj.png\">%s-p%dj.png</a><br> \ |
<img src=\"%s-p%dj.png\">",k,k,subdirf2(optionfilefiname,"ILK_"),k,subdirf2(optionfilefiname,"ILK_"),k,subdirf2(optionfilefiname,"ILK_"),k); |
<img src=\"%s-p%dj.png\">",k,k,subdirf2(optionfilefiname,"ILK_"),k,subdirf2(optionfilefiname,"ILK_"),k,subdirf2(optionfilefiname,"ILK_"),k); |
} |
} |
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fprintf(fichtm,"<br>- The function drawn is -2Log(L) in Log scale: by state of origin <a href=\"%s-ori.png\">%s-ori.png</a><br> \ |
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<img src=\"%s-ori.png\">",subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_")); |
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fprintf(fichtm,"<br>- and by state of destination <a href=\"%s-dest.png\">%s-dest.png</a><br> \ |
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<img src=\"%s-dest.png\">",subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_"),subdirf2(optionfilefiname,"ILK_")); |
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fflush(fichtm); |
} |
} |
return; |
return; |
} |
} |
Line 2937 double hessij( double x[], double **hess
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Line 2989 double hessij( double x[], double **hess
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double p2[MAXPARM+1]; |
double p2[MAXPARM+1]; |
int k, kmax=1; |
int k, kmax=1; |
double v1, v2, cv12, lc1, lc2; |
double v1, v2, cv12, lc1, lc2; |
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int firstime=0; |
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fx=func(x); |
fx=func(x); |
for (k=1; k<=kmax; k=k+10) { |
for (k=1; k<=kmax; k=k+10) { |
Line 2958 double hessij( double x[], double **hess
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Line 3012 double hessij( double x[], double **hess
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k4=func(p2)-fx; |
k4=func(p2)-fx; |
res=(k1-k2-k3+k4)/4.0/delti[thetai]/k/delti[thetaj]/k/2.; /* Because of L not 2*L */ |
res=(k1-k2-k3+k4)/4.0/delti[thetai]/k/delti[thetaj]/k/2.; /* Because of L not 2*L */ |
if(k1*k2*k3*k4 <0.){ |
if(k1*k2*k3*k4 <0.){ |
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firstime=1; |
kmax=kmax+10; |
kmax=kmax+10; |
if(kmax >=10){ |
} |
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if(kmax >=10 || firstime ==1){ |
printf("Warning: directions %d-%d, you are not estimating the Hessian at the exact maximum likelihood; increase ftol=%.2e\n",thetai,thetaj, ftol); |
printf("Warning: directions %d-%d, you are not estimating the Hessian at the exact maximum likelihood; increase ftol=%.2e\n",thetai,thetaj, ftol); |
fprintf(ficlog,"Warning: directions %d-%d, you are not estimating the Hessian at the exact maximum likelihood; increase ftol=%.2e\n",thetai,thetaj, ftol); |
fprintf(ficlog,"Warning: directions %d-%d, you are not estimating the Hessian at the exact maximum likelihood; increase ftol=%.2e\n",thetai,thetaj, ftol); |
printf("%d %d k=%d, k1=%.12e k2=%.12e k3=%.12e k4=%.12e delti*k=%.12e deltj*k=%.12e, xi-de*k=%.12e xj-de*k=%.12e res=%.12e k1234=%.12e,k1-2=%.12e,k3-4=%.12e\n",thetai,thetaj,k,k1,k2,k3,k4,delti[thetai]/k,delti[thetaj]/k,x[thetai]-delti[thetai]/k,x[thetaj]-delti[thetaj]/k, res,k1-k2-k3+k4,k1-k2,k3-k4); |
printf("%d %d k=%d, k1=%.12e k2=%.12e k3=%.12e k4=%.12e delti*k=%.12e deltj*k=%.12e, xi-de*k=%.12e xj-de*k=%.12e res=%.12e k1234=%.12e,k1-2=%.12e,k3-4=%.12e\n",thetai,thetaj,k,k1,k2,k3,k4,delti[thetai]/k,delti[thetaj]/k,x[thetai]-delti[thetai]/k,x[thetaj]-delti[thetaj]/k, res,k1-k2-k3+k4,k1-k2,k3-k4); |
fprintf(ficlog,"%d %d k=%d, k1=%.12e k2=%.12e k3=%.12e k4=%.12e delti*k=%.12e deltj*k=%.12e, xi-de*k=%.12e xj-de*k=%.12e res=%.12e k1234=%.12e,k1-2=%.12e,k3-4=%.12e\n",thetai,thetaj,k,k1,k2,k3,k4,delti[thetai]/k,delti[thetaj]/k,x[thetai]-delti[thetai]/k,x[thetaj]-delti[thetaj]/k, res,k1-k2-k3+k4,k1-k2,k3-k4); |
fprintf(ficlog,"%d %d k=%d, k1=%.12e k2=%.12e k3=%.12e k4=%.12e delti*k=%.12e deltj*k=%.12e, xi-de*k=%.12e xj-de*k=%.12e res=%.12e k1234=%.12e,k1-2=%.12e,k3-4=%.12e\n",thetai,thetaj,k,k1,k2,k3,k4,delti[thetai]/k,delti[thetaj]/k,x[thetai]-delti[thetai]/k,x[thetaj]-delti[thetaj]/k, res,k1-k2-k3+k4,k1-k2,k3-k4); |
} |
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} |
} |
#ifdef DEBUGHESSIJ |
#ifdef DEBUGHESSIJ |
v1=hess[thetai][thetai]; |
v1=hess[thetai][thetai]; |
Line 4024 void cvevsij(double ***eij, double x[],
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Line 4079 void cvevsij(double ***eij, double x[],
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fprintf(ficlog,"Problem with resultfile: %s\n", fileresprobmorprev); |
fprintf(ficlog,"Problem with resultfile: %s\n", fileresprobmorprev); |
} |
} |
printf("Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
printf("Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
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fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
fprintf(ficlog,"Computing total mortality p.j=w1*p1j+w2*p2j+..: result on file '%s' \n",fileresprobmorprev); |
pstamp(ficresprobmorprev); |
pstamp(ficresprobmorprev); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
fprintf(ficresprobmorprev,"# probabilities of dying before estepm=%d months for people of exact age and weighted probabilities w1*p1j+w2*p2j+... stand dev in()\n",estepm); |
Line 4035 void cvevsij(double ***eij, double x[],
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Line 4089 void cvevsij(double ***eij, double x[],
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fprintf(ficresprobmorprev," w%1d p%-d%-d",i,i,j); |
fprintf(ficresprobmorprev," w%1d p%-d%-d",i,i,j); |
} |
} |
fprintf(ficresprobmorprev,"\n"); |
fprintf(ficresprobmorprev,"\n"); |
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fprintf(ficgp,"\n# Routine varevsij"); |
fprintf(ficgp,"\n# Routine varevsij"); |
fprintf(ficgp,"\nunset title \n"); |
fprintf(ficgp,"\nunset title \n"); |
/* fprintf(fichtm, "#Local time at start: %s", strstart);*/ |
/* fprintf(fichtm, "#Local time at start: %s", strstart);*/ |
Line 4072 void cvevsij(double ***eij, double x[],
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Line 4127 void cvevsij(double ***eij, double x[],
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/* For example we decided to compute the life expectancy with the smallest unit */ |
/* For example we decided to compute the life expectancy with the smallest unit */ |
/* hstepm beeing the number of stepms, if hstepm=1 the length of hstepm is stepm. |
/* hstepm beeing the number of stepms, if hstepm=1 the length of hstepm is stepm. |
nhstepm is the number of hstepm from age to agelim |
nhstepm is the number of hstepm from age to agelim |
nstepm is the number of stepm from age to agelin. |
nstepm is the number of stepm from age to agelim. |
Look at function hpijx to understand why (it is linked to memory size questions) */ |
Look at function hpijx to understand why (it is linked to memory size questions) |
/* We decided (b) to get a life expectancy respecting the most precise curvature of the |
we decided (b) to get a life expectancy respecting the most precise curvature of the |
survival function given by stepm (the optimization length). Unfortunately it |
survival function given by stepm (the optimization length). Unfortunately it |
means that if the survival funtion is printed every two years of age and if |
means that if the survival funtion is printed every two years of age and if |
you sum them up and add 1 year (area under the trapezoids) you won't get the same |
you sum them up and add 1 year (area under the trapezoids) you won't get the same |
Line 4290 void cvevsij(double ***eij, double x[],
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Line 4345 void cvevsij(double ***eij, double x[],
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double *xp; |
double *xp; |
double *gp, *gm; |
double *gp, *gm; |
double **gradg, **trgradg; |
double **gradg, **trgradg; |
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double **mgm, **mgp; |
double age,agelim; |
double age,agelim; |
int theta; |
int theta; |
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Line 4311 void cvevsij(double ***eij, double x[],
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Line 4367 void cvevsij(double ***eij, double x[],
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nhstepm=(int) rint((agelim-age)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ |
nhstepm=(int) rint((agelim-age)*YEARM/stepm); /* Typically 20 years = 20*12/6=40 */ |
if (stepm >= YEARM) hstepm=1; |
if (stepm >= YEARM) hstepm=1; |
nhstepm = nhstepm/hstepm; /* Typically 40/4=10 */ |
nhstepm = nhstepm/hstepm; /* Typically 40/4=10 */ |
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p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm); |
gradg=matrix(1,npar,1,nlstate); |
gradg=matrix(1,npar,1,nlstate); |
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mgp=matrix(1,npar,1,nlstate); |
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mgm=matrix(1,npar,1,nlstate); |
gp=vector(1,nlstate); |
gp=vector(1,nlstate); |
gm=vector(1,nlstate); |
gm=vector(1,nlstate); |
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Line 4319 void cvevsij(double ***eij, double x[],
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Line 4378 void cvevsij(double ***eij, double x[],
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for(i=1; i<=npar; i++){ /* Computes gradient */ |
for(i=1; i<=npar; i++){ /* Computes gradient */ |
xp[i] = x[i] + (i==theta ?delti[theta]:0); |
xp[i] = x[i] + (i==theta ?delti[theta]:0); |
} |
} |
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hpxij(p3mat,nhstepm,age,hstepm,xp,nlstate,stepm,oldm,savm, ij); /* Missing or not useful because 1 year */ |
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ncvyear,ij); |
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ncvyear,ij); |
for(i=1;i<=nlstate;i++) |
for(i=1;i<=nlstate;i++){ |
gp[i] = prlim[i][i]; |
gp[i] = prlim[i][i]; |
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mgp[theta][i] = prlim[i][i]; |
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} |
for(i=1; i<=npar; i++) /* Computes gradient */ |
for(i=1; i<=npar; i++) /* Computes gradient */ |
xp[i] = x[i] - (i==theta ?delti[theta]:0); |
xp[i] = x[i] - (i==theta ?delti[theta]:0); |
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ncvyear,ij); |
prevalim(prlim,nlstate,xp,age,oldm,savm,ftolpl,ncvyear,ij); |
for(i=1;i<=nlstate;i++) |
for(i=1;i<=nlstate;i++){ |
gm[i] = prlim[i][i]; |
gm[i] = prlim[i][i]; |
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mgm[theta][i] = prlim[i][i]; |
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} |
for(i=1;i<=nlstate;i++) |
for(i=1;i<=nlstate;i++) |
gradg[theta][i]= (gp[i]-gm[i])/2./delti[theta]; |
gradg[theta][i]= (gp[i]-gm[i])/2./delti[theta]; |
} /* End theta */ |
} /* End theta */ |
Line 4338 void cvevsij(double ***eij, double x[],
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Line 4400 void cvevsij(double ***eij, double x[],
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for(j=1; j<=nlstate;j++) |
for(j=1; j<=nlstate;j++) |
for(theta=1; theta <=npar; theta++) |
for(theta=1; theta <=npar; theta++) |
trgradg[j][theta]=gradg[theta][j]; |
trgradg[j][theta]=gradg[theta][j]; |
|
if((int)age==68 ||(int)age== 69 ){ |
|
printf("\nmgm mgp %d ",(int)age); |
|
for(j=1; j<=nlstate;j++){ |
|
printf("%d ",j); |
|
for(theta=1; theta <=npar; theta++) |
|
printf("%d %lf %lf",theta,mgm[theta][j],mgp[theta][j]); |
|
printf("\n "); |
|
} |
|
} |
|
if((int)age==68 ||(int)age== 69 ){ |
|
printf("\n gradg %d ",(int)age); |
|
for(j=1; j<=nlstate;j++){ |
|
printf("%d ",j); |
|
for(theta=1; theta <=npar; theta++) |
|
printf("%d %lf ",theta,gradg[theta][j]); |
|
printf("\n "); |
|
} |
|
} |
|
|
for(i=1;i<=nlstate;i++) |
for(i=1;i<=nlstate;i++) |
varpl[i][(int)age] =0.; |
varpl[i][(int)age] =0.; |
if((int)age==67 ||(int)age== 66 ){ |
if((int)age==68 ||(int)age== 69 ){ |
matprod2(dnewm,trgradg,1,nlstate,1,npar,1,npar,matcov); |
matprod2(dnewm,trgradg,1,nlstate,1,npar,1,npar,matcov); |
matprod2(doldm,dnewm,1,nlstate,1,npar,1,nlstate,gradg); |
matprod2(doldm,dnewm,1,nlstate,1,npar,1,nlstate,gradg); |
}else{ |
}else{ |
Line 4357 void cvevsij(double ***eij, double x[],
|
Line 4437 void cvevsij(double ***eij, double x[],
|
fprintf(ficresvpl,"\n"); |
fprintf(ficresvpl,"\n"); |
free_vector(gp,1,nlstate); |
free_vector(gp,1,nlstate); |
free_vector(gm,1,nlstate); |
free_vector(gm,1,nlstate); |
|
free_matrix(mgm,1,npar,1,nlstate); |
|
free_matrix(mgp,1,npar,1,nlstate); |
free_matrix(gradg,1,npar,1,nlstate); |
free_matrix(gradg,1,npar,1,nlstate); |
free_matrix(trgradg,1,nlstate,1,npar); |
free_matrix(trgradg,1,nlstate,1,npar); |
} /* End age */ |
} /* End age */ |
Line 4768 divided by h: hPij/h : <a href=\"%s_%d-3
|
Line 4850 divided by h: hPij/h : <a href=\"%s_%d-3
|
} |
} |
/* State specific survival functions (period) */ |
/* State specific survival functions (period) */ |
for(cpt=1; cpt<=nlstate;cpt++){ |
for(cpt=1; cpt<=nlstate;cpt++){ |
fprintf(fichtm,"<br>\n- Survival functions from state %d in any different live states and total.\ |
fprintf(fichtm,"<br>\n- Survival functions from state %d in each live state and total.\ |
Or probability to survive in various states (1 to %d) being in state %d at different ages.\ |
Or probability to survive in various states (1 to %d) being in state %d at different ages.\ |
<a href=\"%s%d_%d.svg\">%s%d_%d.svg</a><br> <img src=\"%s_%d-%d.svg\">", cpt, nlstate, cpt, subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1); |
<a href=\"%s%d_%d.svg\">%s%d_%d.svg</a><br> <img src=\"%s_%d-%d.svg\">", cpt, nlstate, cpt, subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1,subdirf2(optionfilefiname,"LIJT_"),cpt,jj1); |
} |
} |
Line 8019 Please run with mle=-1 to get a correct
|
Line 8101 Please run with mle=-1 to get a correct
|
printf("Problem with Health Exp. resultfile: %s\n", filerese); exit(0); |
printf("Problem with Health Exp. resultfile: %s\n", filerese); exit(0); |
fprintf(ficlog,"Problem with Health Exp. resultfile: %s\n", filerese); exit(0); |
fprintf(ficlog,"Problem with Health Exp. resultfile: %s\n", filerese); exit(0); |
} |
} |
printf("Computing Health Expectancies: result on file '%s' \n", filerese); |
printf("Computing Health Expectancies: result on file '%s' ...", filerese);fflush(stdout); |
fprintf(ficlog,"Computing Health Expectancies: result on file '%s' \n", filerese); |
fprintf(ficlog,"Computing Health Expectancies: result on file '%s' ...", filerese);fflush(ficlog); |
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
|
|
Line 8039 Please run with mle=-1 to get a correct
|
Line 8121 Please run with mle=-1 to get a correct
|
/*}*/ |
/*}*/ |
} |
} |
fclose(ficreseij); |
fclose(ficreseij); |
|
printf("done evsij\n");fflush(stdout); |
|
fprintf(ficlog,"done evsij\n");fflush(ficlog); |
|
|
/*---------- Health expectancies and variances ------------*/ |
/*---------- Health expectancies and variances ------------*/ |
|
|
Line 8050 Please run with mle=-1 to get a correct
|
Line 8133 Please run with mle=-1 to get a correct
|
printf("Problem with total LE resultfile: %s\n", filerest);goto end; |
printf("Problem with total LE resultfile: %s\n", filerest);goto end; |
fprintf(ficlog,"Problem with total LE resultfile: %s\n", filerest);goto end; |
fprintf(ficlog,"Problem with total LE resultfile: %s\n", filerest);goto end; |
} |
} |
printf("Computing Total Life expectancies with their standard errors: file '%s' \n", filerest); |
printf("Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(stdout); |
fprintf(ficlog,"Computing Total Life expectancies with their standard errors: file '%s' \n", filerest); |
fprintf(ficlog,"Computing Total Life expectancies with their standard errors: file '%s' ...\n", filerest); fflush(ficlog); |
|
|
|
|
strcpy(fileresstde,"STDE_"); |
strcpy(fileresstde,"STDE_"); |
Line 8060 Please run with mle=-1 to get a correct
|
Line 8143 Please run with mle=-1 to get a correct
|
printf("Problem with Health Exp. and std errors resultfile: %s\n", fileresstde); exit(0); |
printf("Problem with Health Exp. and std errors resultfile: %s\n", fileresstde); exit(0); |
fprintf(ficlog,"Problem with Health Exp. and std errors resultfile: %s\n", fileresstde); exit(0); |
fprintf(ficlog,"Problem with Health Exp. and std errors resultfile: %s\n", fileresstde); exit(0); |
} |
} |
printf("Computing Health Expectancies and standard errors: result on file '%s' \n", fileresstde); |
printf(" Computing Health Expectancies and standard errors: result on file '%s' \n", fileresstde); |
fprintf(ficlog,"Computing Health Expectancies and standard errors: result on file '%s' \n", fileresstde); |
fprintf(ficlog," Computing Health Expectancies and standard errors: result on file '%s' \n", fileresstde); |
|
|
strcpy(filerescve,"CVE_"); |
strcpy(filerescve,"CVE_"); |
strcat(filerescve,fileresu); |
strcat(filerescve,fileresu); |
Line 8069 Please run with mle=-1 to get a correct
|
Line 8152 Please run with mle=-1 to get a correct
|
printf("Problem with Covar. Health Exp. resultfile: %s\n", filerescve); exit(0); |
printf("Problem with Covar. Health Exp. resultfile: %s\n", filerescve); exit(0); |
fprintf(ficlog,"Problem with Covar. Health Exp. resultfile: %s\n", filerescve); exit(0); |
fprintf(ficlog,"Problem with Covar. Health Exp. resultfile: %s\n", filerescve); exit(0); |
} |
} |
printf("Computing Covar. of Health Expectancies: result on file '%s' \n", filerescve); |
printf(" Computing Covar. of Health Expectancies: result on file '%s' \n", filerescve); |
fprintf(ficlog,"Computing Covar. of Health Expectancies: result on file '%s' \n", filerescve); |
fprintf(ficlog," Computing Covar. of Health Expectancies: result on file '%s' \n", filerescve); |
|
|
strcpy(fileresv,"V_"); |
strcpy(fileresv,"V_"); |
strcat(fileresv,fileresu); |
strcat(fileresv,fileresu); |
Line 8078 Please run with mle=-1 to get a correct
|
Line 8161 Please run with mle=-1 to get a correct
|
printf("Problem with variance resultfile: %s\n", fileresv);exit(0); |
printf("Problem with variance resultfile: %s\n", fileresv);exit(0); |
fprintf(ficlog,"Problem with variance resultfile: %s\n", fileresv);exit(0); |
fprintf(ficlog,"Problem with variance resultfile: %s\n", fileresv);exit(0); |
} |
} |
printf("Computing Variance-covariance of DFLEs: file '%s' \n", fileresv); |
printf(" Computing Variance-covariance of DFLEs: file '%s' ... ", fileresv);fflush(stdout); |
fprintf(ficlog,"Computing Variance-covariance of DFLEs: file '%s' \n", fileresv); |
fprintf(ficlog," Computing Variance-covariance of DFLEs: file '%s' ... ", fileresv);fflush(ficlog); |
|
|
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
|
|
for (k=1; k <= (int) pow(2,cptcoveff); k++){ |
for (k=1; k <= (int) pow(2,cptcoveff); k++){ |
fprintf(ficrest,"\n#****** "); |
fprintf(ficrest,"\n#****** "); |
for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficrest,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrest,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrest,"******\n"); |
fprintf(ficrest,"******\n"); |
|
|
fprintf(ficresstdeij,"\n#****** "); |
fprintf(ficresstdeij,"\n#****** "); |
fprintf(ficrescveij,"\n#****** "); |
fprintf(ficrescveij,"\n#****** "); |
for(j=1;j<=cptcoveff;j++) { |
for(j=1;j<=cptcoveff;j++) { |
fprintf(ficresstdeij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresstdeij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrescveij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficrescveij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
} |
} |
fprintf(ficresstdeij,"******\n"); |
fprintf(ficresstdeij,"******\n"); |
fprintf(ficrescveij,"******\n"); |
fprintf(ficrescveij,"******\n"); |
|
|
fprintf(ficresvij,"\n#****** "); |
fprintf(ficresvij,"\n#****** "); |
for(j=1;j<=cptcoveff;j++) |
for(j=1;j<=cptcoveff;j++) |
fprintf(ficresvij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresvij,"V%d=%d ",Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); |
fprintf(ficresvij,"******\n"); |
fprintf(ficresvij,"******\n"); |
|
|
eij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
eij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
oldm=oldms;savm=savms; |
oldm=oldms;savm=savms; |
cvevsij(eij, p, nlstate, stepm, (int) bage, (int)fage, oldm, savm, k, estepm, delti, matcov, strstart); |
printf(" cvevsij %d, ",k); |
/* |
fprintf(ficlog, " cvevsij %d, ",k); |
*/ |
cvevsij(eij, p, nlstate, stepm, (int) bage, (int)fage, oldm, savm, k, estepm, delti, matcov, strstart); |
/* goto endfree; */ |
printf(" end cvevsij \n "); |
|
fprintf(ficlog, " end cvevsij \n "); |
vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
|
pstamp(ficrest); |
/* |
|
*/ |
|
/* goto endfree; */ |
for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
|
oldm=oldms;savm=savms; /* ZZ Segmentation fault */ |
vareij=ma3x(1,nlstate,1,nlstate,(int) bage, (int) fage); |
cptcod= 0; /* To be deleted */ |
pstamp(ficrest); |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl, ncvyear, k, estepm, cptcov,cptcod,vpopbased,mobilav, strstart); /* cptcod not initialized Intel */ |
|
fprintf(ficrest,"# Total life expectancy with std error and decomposition into time to be expected in each health state\n# (weighted average of eij where weights are "); |
|
if(vpopbased==1) |
for(vpopbased=0; vpopbased <= popbased; vpopbased++){ /* Done for vpopbased=0 and vpopbased=1 if popbased==1*/ |
fprintf(ficrest,"the age specific prevalence observed (cross-sectionally) in the population i.e cross-sectionally\n in each health state (popbased=1) (mobilav=%d)\n",mobilav); |
oldm=oldms;savm=savms; /* ZZ Segmentation fault */ |
else |
cptcod= 0; /* To be deleted */ |
fprintf(ficrest,"the age specific period (stable) prevalences in each health state \n"); |
printf("varevsij %d \n",vpopbased); |
fprintf(ficrest,"# Age popbased mobilav e.. (std) "); |
fprintf(ficlog, "varevsij %d \n",vpopbased); |
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
varevsij(optionfilefiname, vareij, matcov, p, delti, nlstate, stepm, (int) bage, (int) fage, oldm, savm, prlim, ftolpl, ncvyear, k, estepm, cptcov,cptcod,vpopbased,mobilav, strstart); /* cptcod not initialized Intel */ |
fprintf(ficrest,"\n"); |
fprintf(ficrest,"# Total life expectancy with std error and decomposition into time to be expected in each health state\n# (weighted average of eij where weights are "); |
/* printf("Which p?\n"); for(i=1;i<=npar;i++)printf("p[i=%d]=%lf,",i,p[i]);printf("\n"); */ |
if(vpopbased==1) |
epj=vector(1,nlstate+1); |
fprintf(ficrest,"the age specific prevalence observed (cross-sectionally) in the population i.e cross-sectionally\n in each health state (popbased=1) (mobilav=%d)\n",mobilav); |
for(age=bage; age <=fage ;age++){ |
else |
prevalim(prlim, nlstate, p, age, oldm, savm, ftolpl, ncvyear, k); /*ZZ Is it the correct prevalim */ |
fprintf(ficrest,"the age specific period (stable) prevalences in each health state \n"); |
if (vpopbased==1) { |
fprintf(ficrest,"# Age popbased mobilav e.. (std) "); |
if(mobilav ==0){ |
for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i); |
for(i=1; i<=nlstate;i++) |
fprintf(ficrest,"\n"); |
prlim[i][i]=probs[(int)age][i][k]; |
/* printf("Which p?\n"); for(i=1;i<=npar;i++)printf("p[i=%d]=%lf,",i,p[i]);printf("\n"); */ |
}else{ /* mobilav */ |
epj=vector(1,nlstate+1); |
for(i=1; i<=nlstate;i++) |
printf("Computing age specific period (stable) prevalences in each health state \n"); |
prlim[i][i]=mobaverage[(int)age][i][k]; |
fprintf(ficlog,"Computing age specific period (stable) prevalences in each health state \n"); |
} |
for(age=bage; age <=fage ;age++){ |
} |
prevalim(prlim, nlstate, p, age, oldm, savm, ftolpl, ncvyear, k); /*ZZ Is it the correct prevalim */ |
|
if (vpopbased==1) { |
fprintf(ficrest," %4.0f %d %d",age, vpopbased, mobilav); |
if(mobilav ==0){ |
/* fprintf(ficrest," %4.0f %d %d %d %d",age, vpopbased, mobilav,Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); */ /* to be done */ |
for(i=1; i<=nlstate;i++) |
/* printf(" age %4.0f ",age); */ |
prlim[i][i]=probs[(int)age][i][k]; |
for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){ |
}else{ /* mobilav */ |
for(i=1, epj[j]=0.;i <=nlstate;i++) { |
for(i=1; i<=nlstate;i++) |
epj[j] += prlim[i][i]*eij[i][j][(int)age]; |
prlim[i][i]=mobaverage[(int)age][i][k]; |
/*ZZZ printf("%lf %lf ", prlim[i][i] ,eij[i][j][(int)age]);*/ |
|
/* printf("%lf %lf ", prlim[i][i] ,eij[i][j][(int)age]); */ |
|
} |
|
epj[nlstate+1] +=epj[j]; |
|
} |
} |
/* printf(" age %4.0f \n",age); */ |
} |
|
|
for(i=1, vepp=0.;i <=nlstate;i++) |
fprintf(ficrest," %4.0f %d %d",age, vpopbased, mobilav); |
for(j=1;j <=nlstate;j++) |
/* fprintf(ficrest," %4.0f %d %d %d %d",age, vpopbased, mobilav,Tvaraff[j],nbcode[Tvaraff[j]][codtabm(k,j)]); */ /* to be done */ |
vepp += vareij[i][j][(int)age]; |
/* printf(" age %4.0f ",age); */ |
fprintf(ficrest," %7.3f (%7.3f)", epj[nlstate+1],sqrt(vepp)); |
for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){ |
for(j=1;j <=nlstate;j++){ |
for(i=1, epj[j]=0.;i <=nlstate;i++) { |
fprintf(ficrest," %7.3f (%7.3f)", epj[j],sqrt(vareij[j][j][(int)age])); |
epj[j] += prlim[i][i]*eij[i][j][(int)age]; |
|
/*ZZZ printf("%lf %lf ", prlim[i][i] ,eij[i][j][(int)age]);*/ |
|
/* printf("%lf %lf ", prlim[i][i] ,eij[i][j][(int)age]); */ |
} |
} |
fprintf(ficrest,"\n"); |
epj[nlstate+1] +=epj[j]; |
|
} |
|
/* printf(" age %4.0f \n",age); */ |
|
|
|
for(i=1, vepp=0.;i <=nlstate;i++) |
|
for(j=1;j <=nlstate;j++) |
|
vepp += vareij[i][j][(int)age]; |
|
fprintf(ficrest," %7.3f (%7.3f)", epj[nlstate+1],sqrt(vepp)); |
|
for(j=1;j <=nlstate;j++){ |
|
fprintf(ficrest," %7.3f (%7.3f)", epj[j],sqrt(vareij[j][j][(int)age])); |
} |
} |
|
fprintf(ficrest,"\n"); |
} |
} |
free_ma3x(eij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
} /* End vpopbased */ |
free_ma3x(vareij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_ma3x(eij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
free_vector(epj,1,nlstate+1); |
free_ma3x(vareij,1,nlstate,1,nlstate,(int) bage, (int)fage); |
|
free_vector(epj,1,nlstate+1); |
|
printf("done \n");fflush(stdout); |
|
fprintf(ficlog,"done\n");fflush(ficlog); |
|
|
/*}*/ |
/*}*/ |
} |
} /* End k */ |
free_vector(weight,1,n); |
free_vector(weight,1,n); |
free_imatrix(Tvard,1,NCOVMAX,1,2); |
free_imatrix(Tvard,1,NCOVMAX,1,2); |
free_imatrix(s,1,maxwav+1,1,n); |
free_imatrix(s,1,maxwav+1,1,n); |
Line 8180 Please run with mle=-1 to get a correct
|
Line 8275 Please run with mle=-1 to get a correct
|
fclose(ficrescveij); |
fclose(ficrescveij); |
fclose(ficresvij); |
fclose(ficresvij); |
fclose(ficrest); |
fclose(ficrest); |
|
printf("done Health expectancies\n");fflush(stdout); |
|
fprintf(ficlog,"done Health expectancies\n");fflush(ficlog); |
fclose(ficpar); |
fclose(ficpar); |
|
|
/*------- Variance of period (stable) prevalence------*/ |
/*------- Variance of period (stable) prevalence------*/ |
Line 8190 Please run with mle=-1 to get a correct
|
Line 8287 Please run with mle=-1 to get a correct
|
printf("Problem with variance of period (stable) prevalence resultfile: %s\n", fileresvpl); |
printf("Problem with variance of period (stable) prevalence resultfile: %s\n", fileresvpl); |
exit(0); |
exit(0); |
} |
} |
printf("Computing Variance-covariance of period (stable) prevalence: file '%s' \n", fileresvpl); |
printf("Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(stdout); |
|
fprintf(ficlog, "Computing Variance-covariance of period (stable) prevalence: file '%s' ...", fileresvpl);fflush(ficlog); |
|
|
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
/*for(cptcov=1,k=0;cptcov<=i1;cptcov++){ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
for(cptcod=1;cptcod<=ncodemax[cptcov];cptcod++){*/ |
Line 8209 Please run with mle=-1 to get a correct
|
Line 8307 Please run with mle=-1 to get a correct
|
} |
} |
|
|
fclose(ficresvpl); |
fclose(ficresvpl); |
|
printf("done variance-covariance of period prevalence\n");fflush(stdout); |
|
fprintf(ficlog,"done variance-covariance of period prevalence\n");fflush(ficlog); |
|
|
/*---------- End : free ----------------*/ |
/*---------- End : free ----------------*/ |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |
if (mobilav!=0) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX); |