version 1.19, 2002/02/20 17:19:10
|
version 1.24, 2002/02/22 18:10:15
|
Line 1
|
Line 1
|
|
/* $Id$
|
/*********************** Imach **************************************
|
Interpolated Markov Chain
|
This program computes Healthy Life Expectancies from cross-longitudinal
|
|
data. Cross-longitudinal consist in a first survey ("cross") where
|
Short summary of the programme:
|
individuals from different ages are interviewed on their health status
|
|
or degree of disability. At least a second wave of interviews
|
This program computes Healthy Life Expectancies from
|
("longitudinal") should measure each new individual health status.
|
cross-longitudinal data. Cross-longitudinal data consist in: -1- a
|
Health expectancies are computed from the transistions observed between
|
first survey ("cross") where individuals from different ages are
|
waves and are computed for each degree of severity of disability (number
|
interviewed on their health status or degree of disability (in the
|
of life states). More degrees you consider, more time is necessary to
|
case of a health survey which is our main interest) -2- at least a
|
reach the Maximum Likelihood of the parameters involved in the model.
|
second wave of interviews ("longitudinal") which measure each change
|
The simplest model is the multinomial logistic model where pij is
|
(if any) in individual health status. Health expectancies are
|
the probabibility to be observed in state j at the second wave conditional
|
computed from the time spent in each health state according to a
|
to be observed in state i at the first wave. Therefore the model is:
|
model. More health states you consider, more time is necessary to reach the
|
log(pij/pii)= aij + bij*age+ cij*sex + etc , where 'age' is age and 'sex'
|
Maximum Likelihood of the parameters involved in the model. The
|
is a covariate. If you want to have a more complex model than "constant and
|
simplest model is the multinomial logistic model where pij is the
|
age", you should modify the program where the markup
|
probabibility to be observed in state j at the second wave
|
*Covariates have to be included here again* invites you to do it.
|
conditional to be observed in state i at the first wave. Therefore
|
More covariates you add, less is the speed of the convergence.
|
the model is: log(pij/pii)= aij + bij*age+ cij*sex + etc , where
|
|
'age' is age and 'sex' is a covariate. If you want to have a more
|
The advantage that this computer programme claims, comes from that if the
|
complex model than "constant and age", you should modify the program
|
delay between waves is not identical for each individual, or if some
|
where the markup *Covariates have to be included here again* invites
|
individual missed an interview, the information is not rounded or lost, but
|
you to do it. More covariates you add, slower the
|
taken into account using an interpolation or extrapolation.
|
convergence.
|
hPijx is the probability to be
|
|
observed in state i at age x+h conditional to the observed state i at age
|
The advantage of this computer programme, compared to a simple
|
x. The delay 'h' can be split into an exact number (nh*stepm) of
|
multinomial logistic model, is clear when the delay between waves is not
|
unobserved intermediate states. This elementary transition (by month or
|
identical for each individual. Also, if a individual missed an
|
quarter trimester, semester or year) is model as a multinomial logistic.
|
intermediate interview, the information is lost, but taken into
|
The hPx matrix is simply the matrix product of nh*stepm elementary matrices
|
account using an interpolation or extrapolation.
|
and the contribution of each individual to the likelihood is simply hPijx.
|
|
|
hPijx is the probability to be observed in state i at age x+h
|
|
conditional to the observed state i at age x. The delay 'h' can be
|
|
split into an exact number (nh*stepm) of unobserved intermediate
|
|
states. This elementary transition (by month or quarter trimester,
|
|
semester or year) is model as a multinomial logistic. The hPx
|
|
matrix is simply the matrix product of nh*stepm elementary matrices
|
|
and the contribution of each individual to the likelihood is simply
|
|
hPijx.
|
|
|
Also this programme outputs the covariance matrix of the parameters but also
|
Also this programme outputs the covariance matrix of the parameters but also
|
of the life expectancies. It also computes the prevalence limits.
|
of the life expectancies. It also computes the prevalence limits.
|
Line 48
|
Line 56
|
#include <unistd.h>
|
#include <unistd.h>
|
|
|
#define MAXLINE 256
|
#define MAXLINE 256
|
|
#define GNUPLOTPROGRAM "..\\gp37mgw\\wgnuplot"
|
#define FILENAMELENGTH 80
|
#define FILENAMELENGTH 80
|
/*#define DEBUG*/
|
/*#define DEBUG*/
|
#define windows
|
#define windows
|
Line 67
|
Line 76
|
#define AGEBASE 40
|
#define AGEBASE 40
|
|
|
|
|
|
int erreur; /* Error number */
|
int nvar;
|
int nvar;
|
int cptcovn, cptcovage=0, cptcoveff=0,cptcov;
|
int cptcovn, cptcovage=0, cptcoveff=0,cptcov;
|
int npar=NPARMAX;
|
int npar=NPARMAX;
|
Line 140 double ftol=FTOL; /* Tolerance for compu
|
Line 150 double ftol=FTOL; /* Tolerance for compu
|
double ftolhess; /* Tolerance for computing hessian */
|
double ftolhess; /* Tolerance for computing hessian */
|
|
|
/**************** split *************************/
|
/**************** split *************************/
|
static int split( char *path, char *dirc, char *name )
|
static int split( char *path, char *dirc, char *name, char *ext, char *finame )
|
{
|
{
|
char *s; /* pointer */
|
char *s; /* pointer */
|
int l1, l2; /* length counters */
|
int l1, l2; /* length counters */
|
|
|
l1 = strlen( path ); /* length of path */
|
l1 = strlen( path ); /* length of path */
|
if ( l1 == 0 ) return( GLOCK_ERROR_NOPATH );
|
if ( l1 == 0 ) return( GLOCK_ERROR_NOPATH );
|
|
#ifdef windows
|
s = strrchr( path, '\\' ); /* find last / */
|
s = strrchr( path, '\\' ); /* find last / */
|
|
#else
|
|
s = strrchr( path, '/' ); /* find last / */
|
|
#endif
|
if ( s == NULL ) { /* no directory, so use current */
|
if ( s == NULL ) { /* no directory, so use current */
|
#if defined(__bsd__) /* get current working directory */
|
#if defined(__bsd__) /* get current working directory */
|
extern char *getwd( );
|
extern char *getwd( );
|
Line 170 static int split( char *path, char *dirc
|
Line 184 static int split( char *path, char *dirc
|
dirc[l1-l2] = 0; /* add zero */
|
dirc[l1-l2] = 0; /* add zero */
|
}
|
}
|
l1 = strlen( dirc ); /* length of directory */
|
l1 = strlen( dirc ); /* length of directory */
|
|
#ifdef windows
|
if ( dirc[l1-1] != '\\' ) { dirc[l1] = '\\'; dirc[l1+1] = 0; }
|
if ( dirc[l1-1] != '\\' ) { dirc[l1] = '\\'; dirc[l1+1] = 0; }
|
|
#else
|
|
if ( dirc[l1-1] != '/' ) { dirc[l1] = '/'; dirc[l1+1] = 0; }
|
|
#endif
|
|
s = strrchr( name, '.' ); /* find last / */
|
|
s++;
|
|
strcpy(ext,s); /* save extension */
|
|
l1= strlen( name);
|
|
l2= strlen( s)+1;
|
|
strncpy( finame, name, l1-l2);
|
|
finame[l1-l2]= 0;
|
return( 0 ); /* we're done */
|
return( 0 ); /* we're done */
|
}
|
}
|
|
|
Line 718 double **pmij(double **ps, double *cov,
|
Line 743 double **pmij(double **ps, double *cov,
|
s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc];
|
s2 += x[(i-1)*nlstate*ncovmodel+(j-2)*ncovmodel+nc+(i-1)*(ndeath-1)*ncovmodel]*cov[nc];
|
/*printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2);*/
|
/*printf("Int j>i s1=%.17e, s2=%.17e %lx %lx\n",s1,s2,s1,s2);*/
|
}
|
}
|
ps[i][j]=(s2);
|
ps[i][j]=s2;
|
}
|
}
|
}
|
}
|
/*ps[3][2]=1;*/
|
/*ps[3][2]=1;*/
|
Line 901 void mlikeli(FILE *ficres,double p[], in
|
Line 926 void mlikeli(FILE *ficres,double p[], in
|
powell(p,xi,npar,ftol,&iter,&fret,func);
|
powell(p,xi,npar,ftol,&iter,&fret,func);
|
|
|
printf("\n#Number of iterations = %d, -2 Log likelihood = %.12f\n",iter,func(p));
|
printf("\n#Number of iterations = %d, -2 Log likelihood = %.12f\n",iter,func(p));
|
fprintf(ficres,"#Number of iterations = %d, -2 Log likelihood = %.12f ",iter,func(p));
|
fprintf(ficres,"#Number of iterations = %d, -2 Log likelihood = %.12f \n",iter,func(p));
|
|
|
}
|
}
|
|
|
Line 1318 void prevalence(int agemin, int agemax,
|
Line 1343 void prevalence(int agemin, int agemax,
|
if ((k2>=dateprev1) && (k2<=dateprev2)) {
|
if ((k2>=dateprev1) && (k2<=dateprev2)) {
|
if(agev[m][i]==0) agev[m][i]=agemax+1;
|
if(agev[m][i]==0) agev[m][i]=agemax+1;
|
if(agev[m][i]==1) agev[m][i]=agemax+2;
|
if(agev[m][i]==1) agev[m][i]=agemax+2;
|
freq[s[m][i]][s[m+1][i]][(int)(agev[m][i]+1-1/12.)] += weight[i];
|
freq[s[m][i]][s[m+1][i]][(int)(agev[m][i]+1-((int)calagedate %12)/12.)] += weight[i];
|
freq[s[m][i]][s[m+1][i]][(int)(agemax+3+1)] += weight[i];
|
freq[s[m][i]][s[m+1][i]][(int)(agemax+3+1)] += weight[i];
|
}
|
}
|
}
|
}
|
Line 1858 fclose(ficresprob);
|
Line 1883 fclose(ficresprob);
|
/**************** Main Program *****************/
|
/**************** Main Program *****************/
|
/***********************************************/
|
/***********************************************/
|
|
|
/*int main(int argc, char *argv[])*/
|
int main(int argc, char *argv[])
|
int main()
|
|
{
|
{
|
|
|
int i,j, k, n=MAXN,iter,m,size,cptcode, cptcod;
|
int i,j, k, n=MAXN,iter,m,size,cptcode, cptcod;
|
Line 1875 int main()
|
Line 1899 int main()
|
char line[MAXLINE], linepar[MAXLINE];
|
char line[MAXLINE], linepar[MAXLINE];
|
char title[MAXLINE];
|
char title[MAXLINE];
|
char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH];
|
char optionfile[FILENAMELENGTH], datafile[FILENAMELENGTH], filerespl[FILENAMELENGTH], optionfilehtm[FILENAMELENGTH];
|
|
char optionfilext[10], optionfilefiname[FILENAMELENGTH], optionfilegnuplot[FILENAMELENGTH], plotcmd[FILENAMELENGTH];
|
|
|
char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], fileresf[FILENAMELENGTH];
|
char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], fileresf[FILENAMELENGTH];
|
|
|
char filerest[FILENAMELENGTH];
|
char filerest[FILENAMELENGTH];
|
char fileregp[FILENAMELENGTH];
|
char fileregp[FILENAMELENGTH];
|
char popfile[FILENAMELENGTH];
|
char popfile[FILENAMELENGTH];
|
Line 1908 int main()
|
Line 1935 int main()
|
double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,jprojmean,mprojmean,anprojmean, calagedate;
|
double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2,jprojmean,mprojmean,anprojmean, calagedate;
|
double yp,yp1,yp2;
|
double yp,yp1,yp2;
|
|
|
char version[80]="Imach version 64b, May 2001, INED-EUROREVES ";
|
char version[80]="Imach version 0.7, February 2002, INED-EUROREVES ";
|
char *alph[]={"a","a","b","c","d","e"}, str[4];
|
char *alph[]={"a","a","b","c","d","e"}, str[4];
|
|
|
|
|
Line 1923 int main()
|
Line 1950 int main()
|
gettimeofday(&start_time, (struct timezone*)0); */ /* at first time */
|
gettimeofday(&start_time, (struct timezone*)0); */ /* at first time */
|
|
|
|
|
printf("\nIMACH, Version 0.7");
|
printf("\n%s",version);
|
printf("\nEnter the parameter file name: ");
|
if(argc <=1){
|
|
printf("\nEnter the parameter file name: ");
|
#ifdef windows
|
scanf("%s",pathtot);
|
scanf("%s",pathtot);
|
}
|
getcwd(pathcd, size);
|
else{
|
|
strcpy(pathtot,argv[1]);
|
|
}
|
|
/*if(getcwd(pathcd, 80)!= NULL)printf ("Error pathcd\n");*/
|
/*cygwin_split_path(pathtot,path,optionfile);
|
/*cygwin_split_path(pathtot,path,optionfile);
|
printf("pathtot=%s, path=%s, optionfile=%s\n",pathtot,path,optionfile);*/
|
printf("pathtot=%s, path=%s, optionfile=%s\n",pathtot,path,optionfile);*/
|
/* cutv(path,optionfile,pathtot,'\\');*/
|
/* cutv(path,optionfile,pathtot,'\\');*/
|
|
|
split(pathtot, path,optionfile);
|
split(pathtot,path,optionfile,optionfilext,optionfilefiname);
|
|
printf("pathtot=%s, path=%s, optionfile=%s optionfilext=%s optionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname);
|
chdir(path);
|
chdir(path);
|
replace(pathc,path);
|
replace(pathc,path);
|
#endif
|
|
#ifdef unix
|
|
scanf("%s",optionfile);
|
|
#endif
|
|
|
|
/*-------- arguments in the command line --------*/
|
/*-------- arguments in the command line --------*/
|
|
|
strcpy(fileres,"r");
|
strcpy(fileres,"r");
|
strcat(fileres, optionfile);
|
strcat(fileres, optionfilefiname);
|
|
strcat(fileres,".txt"); /* Other files have txt extension */
|
|
|
/*---------arguments file --------*/
|
/*---------arguments file --------*/
|
|
|
Line 2323 printf("Total number of individuals= %d,
|
Line 2351 printf("Total number of individuals= %d,
|
}
|
}
|
}
|
}
|
}
|
}
|
|
|
|
|
|
/*for(i=1; i <=m ;i++){
|
|
for(k=1; k <=cptcovn; k++){
|
|
printf("i=%d k=%d %d %d",i,k,codtab[i][k], cptcoveff);
|
|
}
|
|
printf("\n");
|
|
}
|
|
scanf("%d",i);*/
|
|
|
/* Calculates basic frequencies. Computes observed prevalence at single age
|
/* Calculates basic frequencies. Computes observed prevalence at single age
|
and prints on file fileres'p'. */
|
and prints on file fileres'p'. */
|
Line 2422 printf("Total number of individuals= %d,
|
Line 2459 printf("Total number of individuals= %d,
|
bage = agemin;
|
bage = agemin;
|
fage = agemax;
|
fage = agemax;
|
}
|
}
|
|
|
fprintf(ficres,"# agemin agemax for life expectancy.\n");
|
fprintf(ficres,"# agemin agemax for life expectancy, bage fage (if mle==0 ie no data nor Max likelihood).\n");
|
|
|
fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
fprintf(ficres,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
fprintf(ficparo,"agemin=%.0f agemax=%.0f bage=%.0f fage=%.0f\n",agemin,agemax,bage,fage);
|
|
|
Line 2469 fprintf(ficres,"popforecast=%d popfile=%
|
Line 2505 fprintf(ficres,"popforecast=%d popfile=%
|
|
|
freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2);
|
freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2);
|
|
|
/*------------ gnuplot -------------*/
|
|
chdir(pathcd);
|
/*------------ gnuplot -------------*/
|
if((ficgp=fopen("graph.plt","w"))==NULL) {
|
/*chdir(pathcd);*/
|
printf("Problem with file graph.gp");goto end;
|
strcpy(optionfilegnuplot,optionfilefiname);
|
}
|
strcat(optionfilegnuplot,".plt");
|
|
if((ficgp=fopen(optionfilegnuplot,"w"))==NULL) {
|
|
printf("Problem with file %s",optionfilegnuplot);goto end;
|
|
}
|
#ifdef windows
|
#ifdef windows
|
fprintf(ficgp,"cd \"%s\" \n",pathc);
|
fprintf(ficgp,"cd \"%s\" \n",pathc);
|
#endif
|
#endif
|
m=pow(2,cptcoveff);
|
m=pow(2,cptcoveff);
|
|
|
Line 2632 ij=1;
|
Line 2671 ij=1;
|
}
|
}
|
|
|
fclose(ficgp);
|
fclose(ficgp);
|
|
/* end gnuplot */
|
|
|
chdir(path);
|
chdir(path);
|
|
|
Line 2824 fclose(fichtm);
|
Line 2864 fclose(fichtm);
|
|
|
fclose(ficrespij);
|
fclose(ficrespij);
|
|
|
|
if(stepm == 1) {
|
/*---------- Forecasting ------------------*/
|
/*---------- Forecasting ------------------*/
|
calagedate=(anproj1+mproj1/12.+jproj1/365.-dateintmean)*YEARM;
|
calagedate=(anproj1+mproj1/12.+jproj1/365.-dateintmean)*YEARM;
|
|
|
|
/*printf("calage= %f", calagedate);*/
|
|
|
prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2, calagedate);
|
prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax,mint,anint,dateprev1,dateprev2, calagedate);
|
|
|
|
|
Line 2876 fclose(fichtm);
|
Line 2919 fclose(fichtm);
|
mprojmean=yp;
|
mprojmean=yp;
|
yp1=modf((yp2*30.5),&yp);
|
yp1=modf((yp2*30.5),&yp);
|
jprojmean=yp;
|
jprojmean=yp;
|
fprintf(ficresf,"Estimated date of observed prevalence: %.lf/%.lf/%.lf ",jprojmean,mprojmean,anprojmean);
|
if(jprojmean==0) jprojmean=1;
|
|
if(mprojmean==0) jprojmean=1;
|
|
|
|
fprintf(ficresf,"# Estimated date of observed prevalence: %.lf/%.lf/%.lf ",jprojmean,mprojmean,anprojmean);
|
|
|
if (popforecast==1) {
|
if (popforecast==1) {
|
if((ficpop=fopen(popfile,"r"))==NULL) {
|
if((ficpop=fopen(popfile,"r"))==NULL) {
|
Line 2907 fclose(fichtm);
|
Line 2953 fclose(fichtm);
|
fprintf(ficresf,"# StartingAge FinalAge");
|
fprintf(ficresf,"# StartingAge FinalAge");
|
for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j);
|
for(j=1; j<=nlstate+ndeath;j++) fprintf(ficresf," P.%d",j);
|
if (popforecast==1) fprintf(ficresf," [Population]");
|
if (popforecast==1) fprintf(ficresf," [Population]");
|
|
|
for (cpt=0; cpt<=1;cpt++) {
|
for (cpt=0; cpt<4;cpt++) {
|
fprintf(ficresf,"\n");
|
fprintf(ficresf,"\n");
|
fprintf(ficresf,"\nForecasting at date %.lf/%.lf/%.lf ",jproj1,mproj1,anproj1+cpt);
|
fprintf(ficresf,"\n# Forecasting at date %.lf/%.lf/%.lf ",jproj1,mproj1,anproj1+cpt);
|
for (agedeb=(fage-(1/12.)); agedeb>=(bage-(1/12.)); agedeb--){ /* If stepm=6 months */
|
|
|
for (agedeb=(fage-((int)calagedate %12/12.)); agedeb>=(bage-((int)calagedate %12)/12.); agedeb--){ /* If stepm=6 months */
|
nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm);
|
nhstepm=(int) rint((agelim-agedeb)*YEARM/stepm);
|
nhstepm = nhstepm/hstepm;
|
nhstepm = nhstepm/hstepm;
|
/*printf("agedeb=%.lf stepm=%d hstepm=%d nhstepm=%d \n",agedeb,stepm,hstepm,nhstepm);*/
|
/*printf("agedeb=%.lf stepm=%d hstepm=%d nhstepm=%d \n",agedeb,stepm,hstepm,nhstepm);*/
|
Line 2919 fclose(fichtm);
|
Line 2966 fclose(fichtm);
|
p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
|
p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
|
oldm=oldms;savm=savms;
|
oldm=oldms;savm=savms;
|
hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k);
|
hpxij(p3mat,nhstepm,agedeb,hstepm,p,nlstate,stepm,oldm,savm, k);
|
|
|
for (h=0; h<=nhstepm; h++){
|
for (h=0; h<=nhstepm; h++){
|
if (h==(int) (calagedate+12*cpt)) {
|
if (h==(int) (calagedate+YEARM*cpt)) {
|
fprintf(ficresf,"h=%d ", h);
|
fprintf(ficresf,"\n %.f ",agedeb+h*hstepm/YEARM*stepm);
|
fprintf(ficresf,"\n %f %f ",agedeb,agedeb+h*hstepm/YEARM*stepm);
|
}
|
}
|
|
for(j=1; j<=nlstate+ndeath;j++) {
|
for(j=1; j<=nlstate+ndeath;j++) {
|
kk1=0.;kk2=0;
|
kk1=0.;kk2=0;
|
for(i=1; i<=nlstate;i++) {
|
for(i=1; i<=nlstate;i++) {
|
if (mobilav==1)
|
if (mobilav==1)
|
kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb][i][cptcod];
|
kk1=kk1+p3mat[i][j][h]*mobaverage[(int)agedeb+1][i][cptcod];
|
else {
|
else {
|
kk1=kk1+p3mat[i][j][h]*probs[(int)(agedeb+1)][i][cptcod];
|
kk1=kk1+p3mat[i][j][h]*probs[(int)(agedeb+1)][i][cptcod];
|
/* fprintf(ficresf," p3=%.3f p=%.3f ", p3mat[i][j][h],probs[(int)(agedeb)+1][i][cptcod]);*/
|
/* fprintf(ficresf," p3=%.3f p=%.3f ", p3mat[i][j][h], probs[(int)(agedeb)+1][i][cptcod]);*/
|
}
|
}
|
|
|
if (popforecast==1) kk2=kk1*popeffectif[(int)agedeb];
|
if (popforecast==1) kk2=kk1*popeffectif[(int)agedeb];
|
Line 2945 fclose(fichtm);
|
Line 2991 fclose(fichtm);
|
}
|
}
|
}
|
}
|
}
|
}
|
free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
|
/* free_ma3x(p3mat,1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);*/
|
}
|
}
|
}
|
}
|
}
|
}
|
}
|
}
|
if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
/* if (mobilav==1) free_ma3x(mobaverage,1, AGESUP,1,NCOVMAX, 1,NCOVMAX);
|
if (popforecast==1) {
|
if (popforecast==1) {
|
free_ivector(popage,0,AGESUP);
|
free_ivector(popage,0,AGESUP);
|
free_vector(popeffectif,0,AGESUP);
|
free_vector(popeffectif,0,AGESUP);
|
free_vector(popcount,0,AGESUP);
|
free_vector(popcount,0,AGESUP);
|
}
|
}
|
free_imatrix(s,1,maxwav+1,1,n);
|
free_imatrix(s,1,maxwav+1,1,n);
|
free_vector(weight,1,n);
|
free_vector(weight,1,n);*/
|
fclose(ficresf);
|
fclose(ficresf);
|
|
}/* End forecasting */
|
|
else{
|
|
erreur=108;
|
|
printf("Error %d!! You can only forecast the prevalences if the optimization\n has been performed with stepm = 1 (month) instead of %d\n", erreur, stepm);
|
|
}
|
|
|
/*---------- Health expectancies and variances ------------*/
|
/*---------- Health expectancies and variances ------------*/
|
|
|
strcpy(filerest,"t");
|
strcpy(filerest,"t");
|
Line 3096 strcpy(fileresvpl,"vpl");
|
Line 3148 strcpy(fileresvpl,"vpl");
|
|
|
free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel);
|
free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel);
|
|
|
printf("End of Imach\n");
|
if(erreur >0)
|
|
printf("End of Imach with error %d\n",erreur);
|
|
else printf("End of Imach\n");
|
/* gettimeofday(&end_time, (struct timezone*)0);*/ /* after time */
|
/* gettimeofday(&end_time, (struct timezone*)0);*/ /* after time */
|
|
|
/* printf("Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);*/
|
/* printf("Total time was %d Sec. %d uSec.\n", end_time.tv_sec -start_time.tv_sec, end_time.tv_usec -start_time.tv_usec);*/
|
Line 3106 strcpy(fileresvpl,"vpl");
|
Line 3160 strcpy(fileresvpl,"vpl");
|
|
|
end:
|
end:
|
#ifdef windows
|
#ifdef windows
|
chdir(pathcd);
|
/* chdir(pathcd);*/
|
#endif
|
#endif
|
|
/*system("wgnuplot graph.plt");*/
|
system("..\\gp37mgw\\wgnuplot graph.plt");
|
/*system("../gp37mgw/wgnuplot graph.plt");*/
|
|
/*system("cd ../gp37mgw");*/
|
|
/* system("..\\gp37mgw\\wgnuplot graph.plt");*/
|
|
strcpy(plotcmd,GNUPLOTPROGRAM);
|
|
strcat(plotcmd," ");
|
|
strcat(plotcmd,optionfilegnuplot);
|
|
system(plotcmd);
|
|
|
#ifdef windows
|
#ifdef windows
|
while (z[0] != 'q') {
|
while (z[0] != 'q') {
|
chdir(pathcd);
|
chdir(path);
|
printf("\nType e to edit output files, c to start again, and q for exiting: ");
|
printf("\nType e to edit output files, c to start again, and q for exiting: ");
|
scanf("%s",z);
|
scanf("%s",z);
|
if (z[0] == 'c') system("./imach");
|
if (z[0] == 'c') system("./imach");
|