version 1.316, 2022/05/11 15:11:31
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version 1.317, 2022/05/15 15:06:23
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/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
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Revision 1.317 2022/05/15 15:06:23 brouard |
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* imach.c (Module): Some minor improvements |
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Revision 1.316 2022/05/11 15:11:31 brouard |
Revision 1.316 2022/05/11 15:11:31 brouard |
Summary: r27 |
Summary: r27 |
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Line 2259 void linmin(double p[], double xi[], int
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Line 2262 void linmin(double p[], double xi[], int
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#endif |
#endif |
#ifdef LINMINORIGINAL |
#ifdef LINMINORIGINAL |
#else |
#else |
if(fb == fx){ /* Flat function in the direction */ |
if(fb == fx){ /* Flat function in the direction */ |
xmin=xx; |
xmin=xx; |
*flat=1; |
*flat=1; |
}else{ |
}else{ |
*flat=0; |
*flat=0; |
#endif |
#endif |
/*Flat mnbrak2 shift (*ax=0.000000000000, *fa=51626.272983130431), (*bx=-1.618034000000, *fb=51590.149499362531), (*cx=-4.236068025156, *fc=51590.149499362531) */ |
/*Flat mnbrak2 shift (*ax=0.000000000000, *fa=51626.272983130431), (*bx=-1.618034000000, *fb=51590.149499362531), (*cx=-4.236068025156, *fc=51590.149499362531) */ |
Line 2320 void linmin(double p[], double xi[], int
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Line 2323 void linmin(double p[], double xi[], int
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/*************** powell ************************/ |
/*************** powell ************************/ |
/* |
/* |
Minimization of a function func of n variables. Input consists of an initial starting point |
Minimization of a function func of n variables. Input consists in an initial starting point |
p[1..n] ; an initial matrix xi[1..n][1..n] , whose columns contain the initial set of di- |
p[1..n] ; an initial matrix xi[1..n][1..n] whose columns contain the initial set of di- |
rections (usually the n unit vectors); and ftol , the fractional tolerance in the function value |
rections (usually the n unit vectors); and ftol, the fractional tolerance in the function value |
such that failure to decrease by more than this amount on one iteration signals doneness. On |
such that failure to decrease by more than this amount in one iteration signals doneness. On |
output, p is set to the best point found, xi is the then-current direction set, fret is the returned |
output, p is set to the best point found, xi is the then-current direction set, fret is the returned |
function value at p , and iter is the number of iterations taken. The routine linmin is used. |
function value at p , and iter is the number of iterations taken. The routine linmin is used. |
*/ |
*/ |
Line 2804 void powell(double p[], double **xi, int
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Line 2807 void powell(double p[], double **xi, int
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if(!first){ |
if(!first){ |
first=1; |
first=1; |
printf("Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d). Others in log file only...\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
printf("Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d). Others in log file only...\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
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fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
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}else if (first >=1 && first <10){ |
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fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
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first++; |
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}else if (first ==10){ |
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fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
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printf("Warning: the stable prevalence dit not converge. This warning came too often, IMaCh will stop notifying, even in its log file. Look at the graphs to appreciate the non convergence.\n"); |
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fprintf(ficlog,"Warning: the stable prevalence no convergence; too many cases, giving up noticing, even in log file\n"); |
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first++; |
} |
} |
fprintf(ficlog, "Warning: the stable prevalence at age %d did not converge with the required precision (%g > ftolpl=%g) within %.d years and %d loops. Try to lower 'ftolpl'. Youngest age to start was %d=(%d-%d).\n", (int)age, maxmax, ftolpl, *ncvyear, ncvloop, (int)(agefin+stepm/YEARM), (int)(age-stepm/YEARM), (int)delaymax); |
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/* Try to lower 'ftol', for example from 1.e-8 to 6.e-9.\n", ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, (int)age-(int)agefin); */ |
/* Try to lower 'ftol', for example from 1.e-8 to 6.e-9.\n", ftolpl, (int)age, (int)delaymax, (int)agefin, ncvloop, (int)age-(int)agefin); */ |
free_vector(min,1,nlstate); |
free_vector(min,1,nlstate); |
Line 5327 void concatwav(int wav[], int **dh, int
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Line 5338 void concatwav(int wav[], int **dh, int
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#ifdef UNKNOWNSTATUSNOTCONTRIBUTING |
#ifdef UNKNOWNSTATUSNOTCONTRIBUTING |
break; |
break; |
#else |
#else |
if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ /* case -2 (vital status unknown is warned later */ |
if(s[m][i]==-1 && (int) andc[i] == 9999 && (int)anint[m][i] != 9999){ /* no death date and known date of interview, case -2 (vital status unknown is warned later */ |
if(firsthree == 0){ |
if(firsthree == 0){ |
printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
printf("Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\nOthers in log file only\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
firsthree=1; |
firsthree=1; |
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}else if(firsthree >=1 && firsthree < 10){ |
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fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
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firsthree++; |
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}else if(firsthree == 10){ |
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printf("Information, too many Information flags: no more reported to log either\n"); |
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fprintf(ficlog,"Information, too many Information flags: no more reported to log either\n"); |
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firsthree++; |
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}else{ |
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firsthree++; |
} |
} |
fprintf(ficlog,"Information! Unknown status for individual %ld line=%d occurred at last wave %d at known date %d/%d. Please, check if your unknown date of death %d/%d means a live state %d at wave %d. This case(%d)/wave(%d) contributes to the likelihood as 1-p_{%d%d} .\n",num[i],i,lastpass,(int)mint[m][i],(int)anint[m][i], (int) moisdc[i], (int) andc[i], s[m][i], m, i, m, s[m][i], nlstate+ndeath); |
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mw[++mi][i]=m; /* Valid transition with unknown status */ |
mw[++mi][i]=m; /* Valid transition with unknown status */ |
mli=m; |
mli=m; |
} |
} |
Line 5405 void concatwav(int wav[], int **dh, int
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Line 5424 void concatwav(int wav[], int **dh, int
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} /* End individuals */ |
} /* End individuals */ |
/* wav and mw are no more changed */ |
/* wav and mw are no more changed */ |
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printf("Information, you have to check %d informations which haven't been logged!\n",firsthree); |
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fprintf(ficlog,"Information, you have to check %d informations which haven't been logged!\n",firsthree); |
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for(i=1; i<=imx; i++){ |
for(i=1; i<=imx; i++){ |
for(mi=1; mi<wav[i];mi++){ |
for(mi=1; mi<wav[i];mi++){ |
if (stepm <=0) |
if (stepm <=0) |
Line 6986 void printinghtml(char fileresu[], char
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Line 7008 void printinghtml(char fileresu[], char
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m=pow(2,cptcoveff); |
m=pow(2,cptcoveff); |
if (cptcovn < 1) {m=1;ncodemax[1]=1;} |
if (cptcovn < 1) {m=1;ncodemax[1]=1;} |
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fprintf(fichtm," \n<ul><li><b>Graphs</b></li><p>"); |
fprintf(fichtm," \n<ul><li><b>Graphs (first order)</b></li><p>"); |
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jj1=0; |
jj1=0; |
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Line 7021 void printinghtml(char fileresu[], char
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Line 7043 void printinghtml(char fileresu[], char
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fprintf(fichtm,"</a></li>"); |
fprintf(fichtm,"</a></li>"); |
} /* cptcovn >0 */ |
} /* cptcovn >0 */ |
} |
} |
fprintf(fichtm," \n</ul>"); |
fprintf(fichtm," \n</ul>"); |
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jj1=0; |
jj1=0; |
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Line 7173 See page 'Matrix of variance-covariance
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Line 7195 See page 'Matrix of variance-covariance
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/* else */ |
/* else */ |
/* fprintf(fichtm,"\n No population forecast: popforecast = %d (instead of 1) or stepm = %d (instead of 1) or model=%s (instead of .)<br><br></li>\n",popforecast, stepm, model); */ |
/* fprintf(fichtm,"\n No population forecast: popforecast = %d (instead of 1) or stepm = %d (instead of 1) or model=%s (instead of .)<br><br></li>\n",popforecast, stepm, model); */ |
fflush(fichtm); |
fflush(fichtm); |
fprintf(fichtm," <ul><li><b>Graphs</b></li><p>"); |
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m=pow(2,cptcoveff); |
m=pow(2,cptcoveff); |
if (cptcovn < 1) {m=1;ncodemax[1]=1;} |
if (cptcovn < 1) {m=1;ncodemax[1]=1;} |
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fprintf(fichtm," <ul><li><b>Graphs (second order)</b></li><p>"); |
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jj1=0; |
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fprintf(fichtm," \n<ul>"); |
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for(nres=1; nres <= nresult; nres++) /* For each resultline */ |
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for(k1=1; k1<=m;k1++){ /* For each combination of covariate */ |
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if(m != 1 && TKresult[nres]!= k1) |
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continue; |
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jj1++; |
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if (cptcovn > 0) { |
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fprintf(fichtm,"\n<li><a size=\"1\" color=\"#EC5E5E\" href=\"#rescovsecond"); |
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for (cpt=1; cpt<=cptcoveff;cpt++){ |
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fprintf(fichtm,"_V%d=%d_",Tvresult[nres][cpt],(int)Tresult[nres][cpt]); |
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} |
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for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
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fprintf(fichtm,"_V%d=%f_",Tvqresult[nres][k4],Tqresult[nres][k4]); |
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} |
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fprintf(fichtm,"\">"); |
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/* if(nqfveff+nqtveff 0) */ /* Test to be done */ |
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fprintf(fichtm,"************ Results for covariates"); |
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for (cpt=1; cpt<=cptcoveff;cpt++){ |
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fprintf(fichtm," V%d=%d ",Tvresult[nres][cpt],(int)Tresult[nres][cpt]); |
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} |
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for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
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fprintf(fichtm," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
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} |
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if(invalidvarcomb[k1]){ |
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fprintf(fichtm," Warning Combination (%d) ignored because no cases ",k1); |
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continue; |
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} |
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fprintf(fichtm,"</a></li>"); |
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} /* cptcovn >0 */ |
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} |
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fprintf(fichtm," \n</ul>"); |
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jj1=0; |
jj1=0; |
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for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
for(nres=1; nres <= nresult; nres++){ /* For each resultline */ |
Line 7187 See page 'Matrix of variance-covariance
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Line 7245 See page 'Matrix of variance-covariance
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/* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
/* for(i1=1; i1<=ncodemax[k1];i1++){ */ |
jj1++; |
jj1++; |
if (cptcovn > 0) { |
if (cptcovn > 0) { |
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fprintf(fichtm,"\n<p><a name=\"rescovsecond"); |
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for (cpt=1; cpt<=cptcoveff;cpt++){ |
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fprintf(fichtm,"_V%d=%d_",Tvresult[nres][cpt],(int)Tresult[nres][cpt]); |
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} |
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for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
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fprintf(fichtm,"_V%d=%f_",Tvqresult[nres][k4],Tqresult[nres][k4]); |
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} |
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fprintf(fichtm,"\"</a>"); |
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fprintf(fichtm,"<hr size=\"2\" color=\"#EC5E5E\">************ Results for covariates"); |
fprintf(fichtm,"<hr size=\"2\" color=\"#EC5E5E\">************ Results for covariates"); |
for (cpt=1; cpt<=cptcoveff;cpt++) /**< cptcoveff number of variables */ |
for (cpt=1; cpt<=cptcoveff;cpt++){ /**< cptcoveff number of variables */ |
fprintf(fichtm," V%d=%d ",Tvresult[nres][cpt],Tresult[nres][cpt]); |
fprintf(fichtm," V%d=%d ",Tvresult[nres][cpt],Tresult[nres][cpt]); |
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printf(" V%d=%d ",Tvresult[nres][cpt],Tresult[nres][cpt]);fflush(stdout); |
/* fprintf(fichtm," V%d=%d ",Tvaraff[cpt],nbcode[Tvaraff[cpt]][codtabm(jj1,cpt)]); */ |
/* fprintf(fichtm," V%d=%d ",Tvaraff[cpt],nbcode[Tvaraff[cpt]][codtabm(jj1,cpt)]); */ |
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} |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
for (k4=1; k4<= nsq; k4++){ /* For each selected (single) quantitative value */ |
fprintf(fichtm," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
fprintf(fichtm," V%d=%f ",Tvqresult[nres][k4],Tqresult[nres][k4]); |
} |
} |
Line 11034 int main(int argc, char *argv[])
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Line 11103 int main(int argc, char *argv[])
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double ftolpl=FTOL; |
double ftolpl=FTOL; |
double **prlim; |
double **prlim; |
double **bprlim; |
double **bprlim; |
double ***param; /* Matrix of parameters */ |
double ***param; /* Matrix of parameters, param[i][j][k] param=ma3x(1,nlstate,1,nlstate+ndeath-1,1,ncovmodel) |
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state of origin, state of destination including death, for each covariate: constante, age, and V1 V2 etc. */ |
double ***paramstart; /* Matrix of starting parameter values */ |
double ***paramstart; /* Matrix of starting parameter values */ |
double *p, *pstart; /* p=param[1][1] pstart is for starting values guessed by freqsummary */ |
double *p, *pstart; /* p=param[1][1] pstart is for starting values guessed by freqsummary */ |
double **matcov; /* Matrix of covariance */ |
double **matcov; /* Matrix of covariance */ |
Line 11961 Title=%s <br>Datafile=%s Firstpass=%d La
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Line 12031 Title=%s <br>Datafile=%s Firstpass=%d La
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<img src=\"%s_.svg\">", subdirf2(optionfilefiname,"D_"),subdirf2(optionfilefiname,"D_"),subdirf2(optionfilefiname,"D_")); |
<img src=\"%s_.svg\">", subdirf2(optionfilefiname,"D_"),subdirf2(optionfilefiname,"D_"),subdirf2(optionfilefiname,"D_")); |
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fprintf(fichtm,"\n<h4>Some descriptive statistics </h4>\n<br>Total number of observations=%d <br>\n\ |
fprintf(fichtm,"\n<h4>Some descriptive statistics </h4>\n<br>Number of (used) observations=%d <br>\n\ |
Youngest age at first (selected) pass %.2f, oldest age %.2f<br>\n\ |
Youngest age at first (selected) pass %.2f, oldest age %.2f<br>\n\ |
Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf<br>\n",\ |
Interval (in months) between two waves: Min=%d Max=%d Mean=%.2lf<br>\n",\ |
imx,agemin,agemax,jmin,jmax,jmean); |
imx,agemin,agemax,jmin,jmax,jmean); |