version 1.339, 2022/09/09 17:55:22
|
version 1.342, 2022/09/11 19:54:09
|
Line 1
|
Line 1
|
/* $Id$ |
/* $Id$ |
$State$ |
$State$ |
$Log$ |
$Log$ |
|
Revision 1.342 2022/09/11 19:54:09 brouard |
|
Summary: 0.99r38 |
|
|
|
* imach.c (Module): Adding timevarying products of any kinds, |
|
should work before shifting cotvar from ncovcol+nqv columns in |
|
order to have a correspondance between the column of cotvar and |
|
the id of column. |
|
(Module): Some cleaning and adding covariates in ILK.txt |
|
|
|
Revision 1.341 2022/09/11 07:58:42 brouard |
|
Summary: Version 0.99r38 |
|
|
|
After adding change in cotvar. |
|
|
|
Revision 1.340 2022/09/11 07:53:11 brouard |
|
Summary: Version imach 0.99r37 |
|
|
|
* imach.c (Module): Adding timevarying products of any kinds, |
|
should work before shifting cotvar from ncovcol+nqv columns in |
|
order to have a correspondance between the column of cotvar and |
|
the id of column. |
|
|
Revision 1.339 2022/09/09 17:55:22 brouard |
Revision 1.339 2022/09/09 17:55:22 brouard |
Summary: version 0.99r37 |
Summary: version 0.99r37 |
|
|
Line 1317 char fullversion[]="$Revision$ $Date$";
|
Line 1339 char fullversion[]="$Revision$ $Date$";
|
char strstart[80]; |
char strstart[80]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
char optionfilext[10], optionfilefiname[FILENAMELENGTH]; |
int erreur=0, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ |
int erreur=0, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings */ |
|
int debugILK=0; /* debugILK is set by a #d in a comment line */ |
int nagesqr=0, nforce=0; /* nagesqr=1 if model is including age*age, number of forces */ |
int nagesqr=0, nforce=0; /* nagesqr=1 if model is including age*age, number of forces */ |
/* Number of covariates model (1)=V2+V1+ V3*age+V2*V4 */ |
/* Number of covariates model (1)=V2+V1+ V3*age+V2*V4 */ |
/* Model(2) V1 + V2 + V3 + V8 + V7*V8 + V5*V6 + V8*age + V3*age + age*age */ |
/* Model(2) V1 + V2 + V3 + V8 + V7*V8 + V5*V6 + V8*age + V3*age + age*age */ |
Line 1495 double **covar; /**< covar[j,i], value
|
Line 1518 double **covar; /**< covar[j,i], value
|
* covar=matrix(0,NCOVMAX,1,n); |
* covar=matrix(0,NCOVMAX,1,n); |
* cov[Tage[kk]+2]=covar[Tvar[Tage[kk]]][i]*age; */ |
* cov[Tage[kk]+2]=covar[Tvar[Tage[kk]]][i]*age; */ |
double **coqvar; /* Fixed quantitative covariate nqv */ |
double **coqvar; /* Fixed quantitative covariate nqv */ |
double ***cotvar; /* Time varying covariate ntv */ |
double ***cotvar; /* Time varying covariate start at ncovcol + nqv + (1 to ntv) */ |
double ***cotqvar; /* Time varying quantitative covariate itqv */ |
double ***cotqvar; /* Time varying quantitative covariate itqv */ |
double idx; |
double idx; |
int **nbcode, *Tvar; /**< model=V2 => Tvar[1]= 2 */ |
int **nbcode, *Tvar; /**< model=V2 => Tvar[1]= 2 */ |
Line 1507 int **nbcode, *Tvar; /**< model=V2 => Tv
|
Line 1530 int **nbcode, *Tvar; /**< model=V2 => Tv
|
* cptcovn number of covariates (not including constant and age or age*age) = number of plus sign + 1 = 10+1=11 |
* cptcovn number of covariates (not including constant and age or age*age) = number of plus sign + 1 = 10+1=11 |
* For time varying covariate, quanti or dummies |
* For time varying covariate, quanti or dummies |
* cotqvar[wav][iv(1 to nqtv)][i]= [1][12][i]=(V12) quanti |
* cotqvar[wav][iv(1 to nqtv)][i]= [1][12][i]=(V12) quanti |
* cotvar[wav][ntv+iv][i]= [3+(1 to nqtv)][i]=(V12) quanti |
* cotvar[wav][ncovcol+nqv+ iv(1 to nqtv)][i]= [(1 to nqtv)][i]=(V12) quanti |
* cotvar[wav][iv(1 to ntv)][i]= [1][1][i]=(V9) dummies at wav 1 |
* cotvar[wav][iv(1 to ntv)][i]= [1][1][i]=(V9) dummies at wav 1 |
* cotvar[wav][iv(1 to ntv)][i]= [1][2][i]=(V10) dummies at wav 1 |
* cotvar[wav][iv(1 to ntv)][i]= [1][2][i]=(V10) dummies at wav 1 |
* covar[Vk,i], value of the Vkth fixed covariate dummy or quanti for individual i: |
* covar[Vk,i], value of the Vkth fixed covariate dummy or quanti for individual i: |
Line 3880 double func( double *x)
|
Line 3903 double func( double *x)
|
int ioffset=0; |
int ioffset=0; |
int ipos=0,iposold=0,ncovv=0; |
int ipos=0,iposold=0,ncovv=0; |
|
|
|
double cotvarv, cotvarvold; |
double l, ll[NLSTATEMAX+1], cov[NCOVMAX+1]; |
double l, ll[NLSTATEMAX+1], cov[NCOVMAX+1]; |
double **out; |
double **out; |
double lli; /* Individual log likelihood */ |
double lli; /* Individual log likelihood */ |
Line 3927 double func( double *x)
|
Line 3951 double func( double *x)
|
mw[mi][i] is real wave of the mi th effectve wave */ |
mw[mi][i] is real wave of the mi th effectve wave */ |
/* Then statuses are computed at each begin and end of an effective wave s1=s[ mw[mi][i] ][i]; |
/* Then statuses are computed at each begin and end of an effective wave s1=s[ mw[mi][i] ][i]; |
s2=s[mw[mi+1][i]][i]; |
s2=s[mw[mi+1][i]][i]; |
And the iv th varying covariate is the cotvar[mw[mi+1][i]][iv][i] |
And the iv th varying covariate is the cotvar[mw[mi+1][i]][iv][i] because now is moved after nvocol+nqv |
But if the variable is not in the model TTvar[iv] is the real variable effective in the model: |
But if the variable is not in the model TTvar[iv] is the real variable effective in the model: |
meaning that decodemodel should be used cotvar[mw[mi+1][i]][TTvar[iv]][i] |
meaning that decodemodel should be used cotvar[mw[mi+1][i]][TTvar[iv]][i] |
*/ |
*/ |
Line 3937 double func( double *x)
|
Line 3961 double func( double *x)
|
/* /\* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]][i]; but where is the crossproduct? *\/ */ |
/* /\* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]][i]; but where is the crossproduct? *\/ */ |
/* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]-ncovcol-nqv][i]; */ |
/* cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]-ncovcol-nqv][i]; */ |
/* } */ |
/* } */ |
for(ncovv=1, ipos=0; ncovv <= ncovvt ; ncovv++){ /* Varying covariates (single and product but no age )*/ |
for(ncovv=1, iposold=0; ncovv <= ncovvt ; ncovv++){ /* Varying covariates (single and product but no age )*/ |
itv=TvarVV[ncovv]; /* TvarVV={3, 1, 3} */ |
itv=TvarVV[ncovv]; /* TvarVV={3, 1, 3} gives the name of each varying covariate */ |
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] */ |
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] gives the position in the model of the ncovv th varying covariate*/ |
|
if(TvarFind[itv]==0){ /* Not a fixed covariate */ |
|
cotvarv=cotvar[mw[mi][i]][TvarVV[ncovv]][i]; /* cotvar[wav][ncovcol+nqv+iv][i] */ |
|
}else{ /* fixed covariate */ |
|
cotvarv=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
if(ipos!=iposold){ /* Not a product or first of a product */ |
if(ipos!=iposold){ /* Not a product or first of a product */ |
/* TvarFind={1,0,0,0} */ |
cotvarvold=cotvarv; |
if(TvarFind[itv]==0){ |
}else{ /* A second product */ |
cov[ioffset+ipos]= cotvar[mw[mi][i]][ncovv][i]; /* Should be covar if fixed covar[Tvar[TvarFind[itv]]][i]*/ |
cotvarv=cotvarv*cotvarvold; |
}else{ |
|
cov[ioffset+ipos]=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
|
}else{ |
|
if(TvarFind[itv]==0){ |
|
cov[ioffset+ipos]*= cotvar[mw[mi][i]][ncovv][i]; /* Should be covar if fixed covar[Tvar[TvarFind[itv]]][i]*/ |
|
}else{ |
|
cov[ioffset+ipos]*=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
|
} |
} |
iposold=ipos; |
iposold=ipos; |
/* For products */ |
cov[ioffset+ipos]=cotvarv; |
} |
} |
/* for(itv=1; itv <= ntveff; itv++){ /\* Varying dummy covariates (single??)*\/ */ |
/* for(itv=1; itv <= ntveff; itv++){ /\* Varying dummy covariates (single??)*\/ */ |
/* iv= Tvar[Tmodelind[ioffset-2-nagesqr-cptcovage+itv]]-ncovcol-nqv; /\* Counting the # varying covariate from 1 to ntveff *\/ */ |
/* iv= Tvar[Tmodelind[ioffset-2-nagesqr-cptcovage+itv]]-ncovcol-nqv; /\* Counting the # varying covariate from 1 to ntveff *\/ */ |
Line 3988 double func( double *x)
|
Line 4008 double func( double *x)
|
if(!FixedV[Tvar[Tage[kk]]]) |
if(!FixedV[Tvar[Tage[kk]]]) |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ |
else |
else |
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; |
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
} |
} |
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate)); |
1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate)); |
Line 4084 double func( double *x)
|
Line 4104 double func( double *x)
|
} |
} |
/*lli=(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]);*/ |
/*lli=(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]);*/ |
/*if(lli ==000.0)*/ |
/*if(lli ==000.0)*/ |
/*printf("bbh= %f lli=%f savm=%f out=%f %d\n",bbh,lli,savm[s1][s2], out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]],i); */ |
/* printf("num[i], i=%d, bbh= %f lli=%f savm=%f out=%f %d\n",bbh,lli,savm[s1][s2], out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]],i); */ |
ipmx +=1; |
ipmx +=1; |
sw += weight[i]; |
sw += weight[i]; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
Line 4101 double func( double *x)
|
Line 4121 double func( double *x)
|
cov[ioffset+TvarFind[k]]=covar[Tvar[TvarFind[k]]][i]; |
cov[ioffset+TvarFind[k]]=covar[Tvar[TvarFind[k]]][i]; |
for(mi=1; mi<= wav[i]-1; mi++){ |
for(mi=1; mi<= wav[i]-1; mi++){ |
for(k=1; k <= ncovv ; k++){ |
for(k=1; k <= ncovv ; k++){ |
cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]-ncovcol-nqv][i]; |
cov[ioffset+TvarVind[k]]=cotvar[mw[mi][i]][Tvar[TvarVind[k]]][i]; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
} |
} |
for (ii=1;ii<=nlstate+ndeath;ii++) |
for (ii=1;ii<=nlstate+ndeath;ii++) |
for (j=1;j<=nlstate+ndeath;j++){ |
for (j=1;j<=nlstate+ndeath;j++){ |
Line 4148 double func( double *x)
|
Line 4168 double func( double *x)
|
if(nagesqr==1) |
if(nagesqr==1) |
cov[3]= agexact*agexact; |
cov[3]= agexact*agexact; |
for (kk=1; kk<=cptcovage;kk++) { |
for (kk=1; kk<=cptcovage;kk++) { |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; |
if(!FixedV[Tvar[Tage[kk]]]) |
|
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ |
|
else |
|
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
} |
} |
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate)); |
1,nlstate+ndeath,pmij(pmmij,cov,ncovmodel,x,nlstate)); |
Line 4204 double func( double *x)
|
Line 4227 double func( double *x)
|
ipmx +=1; |
ipmx +=1; |
sw += weight[i]; |
sw += weight[i]; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
/* printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
/* printf("i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],out[s1][s2],savm[s1][s2]); */ |
} /* end of wave */ |
} /* end of wave */ |
} /* end of individual */ |
} /* end of individual */ |
}else{ /* ml=5 no inter-extrapolation no jackson =0.8a */ |
}else{ /* ml=5 no inter-extrapolation no jackson =0.8a */ |
Line 4223 double func( double *x)
|
Line 4246 double func( double *x)
|
if(nagesqr==1) |
if(nagesqr==1) |
cov[3]= agexact*agexact; |
cov[3]= agexact*agexact; |
for (kk=1; kk<=cptcovage;kk++) { |
for (kk=1; kk<=cptcovage;kk++) { |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; |
if(!FixedV[Tvar[Tage[kk]]]) |
|
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; /* Tage[kk] gives the data-covariate associated with age */ |
|
else |
|
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
} |
} |
|
|
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
out=matprod2(newm,oldm,1,nlstate+ndeath,1,nlstate+ndeath, |
Line 4256 double funcone( double *x)
|
Line 4282 double funcone( double *x)
|
int ioffset=0; |
int ioffset=0; |
int ipos=0,iposold=0,ncovv=0; |
int ipos=0,iposold=0,ncovv=0; |
|
|
|
double cotvarv, cotvarvold; |
double l, ll[NLSTATEMAX+1], cov[NCOVMAX+1]; |
double l, ll[NLSTATEMAX+1], cov[NCOVMAX+1]; |
double **out; |
double **out; |
double lli; /* Individual log likelihood */ |
double lli; /* Individual log likelihood */ |
Line 4310 double funcone( double *x)
|
Line 4337 double funcone( double *x)
|
mw[mi][i] is real wave of the mi th effectve wave */ |
mw[mi][i] is real wave of the mi th effectve wave */ |
/* Then statuses are computed at each begin and end of an effective wave s1=s[ mw[mi][i] ][i]; |
/* Then statuses are computed at each begin and end of an effective wave s1=s[ mw[mi][i] ][i]; |
s2=s[mw[mi+1][i]][i]; |
s2=s[mw[mi+1][i]][i]; |
And the iv th varying covariate is the cotvar[mw[mi+1][i]][iv][i] |
And the iv th varying covariate in the DATA is the cotvar[mw[mi+1][i]][ncovcol+nqv+iv][i] |
But if the variable is not in the model TTvar[iv] is the real variable effective in the model: |
|
meaning that decodemodel should be used cotvar[mw[mi+1][i]][TTvar[iv]][i] |
|
*/ |
*/ |
/* This part may be useless now because everythin should be in covar */ |
/* This part may be useless now because everythin should be in covar */ |
/* for (k=1; k<=nqfveff;k++){ /\* Simple and product fixed Quantitative covariates without age* products *\/ */ |
/* for (k=1; k<=nqfveff;k++){ /\* Simple and product fixed Quantitative covariates without age* products *\/ */ |
Line 4337 double funcone( double *x)
|
Line 4362 double funcone( double *x)
|
/* We need the position of the time varying or product in the model */ |
/* We need the position of the time varying or product in the model */ |
/* TvarVVind={2,5,5}, for V3 at position 2 and then the product V1*V3 is decomposed into V1 and V3 but at same position 5 */ |
/* TvarVVind={2,5,5}, for V3 at position 2 and then the product V1*V3 is decomposed into V1 and V3 but at same position 5 */ |
/* TvarVV gives the variable name */ |
/* TvarVV gives the variable name */ |
for(ncovv=1, ipos=0; ncovv <= ncovvt ; ncovv++){ /* Varying covariates (single and product but no age )*/ |
/* Other example V1 + V3 + V5 + age*V1 + age*V3 + age*V5 + V1*V3 + V3*V5 + V1*V5 |
itv=TvarVV[ncovv]; /* TvarVV={3, 1, 3} */ |
* k= 1 2 3 4 5 6 7 8 9 |
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] */ |
* varying 1 2 3 4 5 |
|
* ncovv 1 2 3 4 5 6 7 8 |
|
* TvarVV V3 5 1 3 3 5 1 5 |
|
* TvarVVind 2 3 7 7 8 8 9 9 |
|
* TvarFind[k] 1 0 0 0 0 0 0 0 0 |
|
* cotvar starts at ntv=2 (because of V3 V4) |
|
*/ |
|
for(ncovv=1, iposold=0; ncovv <= ncovvt ; ncovv++){ /* Varying covariates (single and product but no age) including individual from products */ |
|
itv=TvarVV[ncovv]; /* TvarVV={3, 1, 3} gives the name of each varying covariate */ |
|
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] gives the position in the model of the ncovv th varying covariate*/ |
|
if(TvarFind[itv]==0){ /* Not a fixed covariate */ |
|
cotvarv=cotvar[mw[mi][i]][TvarVV[ncovv]][i]; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
|
}else{ /* fixed covariate */ |
|
cotvarv=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
if(ipos!=iposold){ /* Not a product or first of a product */ |
if(ipos!=iposold){ /* Not a product or first of a product */ |
/* TvarFind={1,0,0,0} */ |
cotvarvold=cotvarv; |
if(TvarFind[itv]==0){ |
}else{ /* A second product */ |
cov[ioffset+ipos]= cotvar[mw[mi][i]][ncovv][i]; /* Should be covar if fixed covar[Tvar[TvarFind[itv]]][i]*/ |
cotvarv=cotvarv*cotvarvold; |
}else{ |
|
cov[ioffset+ipos]=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
|
}else{ |
|
if(TvarFind[itv]==0){ |
|
cov[ioffset+ipos]*= cotvar[mw[mi][i]][ncovv][i]; /* Should be covar if fixed covar[Tvar[TvarFind[itv]]][i]*/ |
|
}else{ |
|
cov[ioffset+ipos]*=covar[Tvar[TvarFind[itv]]][i]; |
|
} |
|
} |
} |
iposold=ipos; |
iposold=ipos; |
|
cov[ioffset+ipos]=cotvarv; |
/* For products */ |
/* For products */ |
} |
} |
/* for(itv=1; itv <= ntveff; itv++){ /\* Varying dummy covariates single *\/ */ |
/* for(itv=1; itv <= ntveff; itv++){ /\* Varying dummy covariates single *\/ */ |
Line 4397 double funcone( double *x)
|
Line 4428 double funcone( double *x)
|
if(!FixedV[Tvar[Tage[kk]]]) |
if(!FixedV[Tvar[Tage[kk]]]) |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; |
cov[Tage[kk]+2+nagesqr]=covar[Tvar[Tage[kk]]][i]*agexact; |
else |
else |
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; |
cov[Tage[kk]+2+nagesqr]=cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]*agexact; /* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
} |
} |
/* printf("i=%d,mi=%d,d=%d,mw[mi][i]=%d\n",i, mi,d,mw[mi][i]); */ |
/* printf("i=%d,mi=%d,d=%d,mw[mi][i]=%d\n",i, mi,d,mw[mi][i]); */ |
/* savm=pmij(pmmij,cov,ncovmodel,x,nlstate); */ |
/* savm=pmij(pmmij,cov,ncovmodel,x,nlstate); */ |
Line 4452 double funcone( double *x)
|
Line 4483 double funcone( double *x)
|
ipmx +=1; |
ipmx +=1; |
sw += weight[i]; |
sw += weight[i]; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli; |
/* printf("Funcone i=%6d s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],(s2==-1? -1: out[s1][s2]),(s2==-1? -1: savm[s1][s2])); */ |
/* Printing covariates values for each contribution for checking */ |
|
/* printf(" s1=%1d s2=%1d mi=%1d mw=%1d dh=%3d prob=%10.6f w=%6.4f out=%10.6f sav=%10.6f\n",s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],(s2==-1? -1: out[s1][s2]),(s2==-1? -1: savm[s1][s2])); */ |
if(globpr){ |
if(globpr){ |
fprintf(ficresilk,"%09ld %6.1f %6.1f %6d %2d %2d %2d %2d %3d %15.6f %8.4f %8.3f\ |
fprintf(ficresilk,"%09ld %6.1f %6.1f %6d %2d %2d %2d %2d %3d %15.6f %8.4f %8.3f\ |
%11.6f %11.6f %11.6f ", \ |
%11.6f %11.6f %11.6f ", \ |
Line 4467 double funcone( double *x)
|
Line 4499 double funcone( double *x)
|
fprintf(ficresilk," %10.6f",-ll[k]*gipmx/gsw); |
fprintf(ficresilk," %10.6f",-ll[k]*gipmx/gsw); |
/* printf(" %10.6f",-ll[k]*gipmx/gsw); */ |
/* printf(" %10.6f",-ll[k]*gipmx/gsw); */ |
} |
} |
fprintf(ficresilk," %10.6f\n", -llt); |
fprintf(ficresilk," %10.6f", -llt); |
/* printf(" %10.6f\n", -llt); */ |
/* printf(" %10.6f\n", -llt); */ |
} |
/* if(debugILK){ /\* debugILK is set by a #d in a comment line *\/ */ |
|
fprintf(ficresilk,"%09ld ", num[i]); |
|
for (kf=1; kf<=ncovf;kf++){ /* Simple and product fixed covariates without age* products *//* Missing values are set to -1 but should be dropped */ |
|
fprintf(ficresilk," %g",covar[Tvar[TvarFind[kf]]][i]); |
|
} |
|
for(ncovv=1, iposold=0; ncovv <= ncovvt ; ncovv++){ /* Varying covariates (single and product but no age) including individual from products */ |
|
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] gives the position in the model of the ncovv th varying covariate*/ |
|
if(ipos!=iposold){ /* Not a product or first of a product */ |
|
fprintf(ficresilk," %g",cov[ioffset+ipos]); |
|
/* printf(" %g",cov[ioffset+ipos]); */ |
|
}else{ |
|
fprintf(ficresilk,"*"); |
|
/* printf("*"); */ |
|
} |
|
iposold=ipos; |
|
} |
|
for (kk=1; kk<=cptcovage;kk++) { |
|
if(!FixedV[Tvar[Tage[kk]]]){ |
|
fprintf(ficresilk," %g*age",covar[Tvar[Tage[kk]]][i]); |
|
/* printf(" %g*age",covar[Tvar[Tage[kk]]][i]); */ |
|
}else{ |
|
fprintf(ficresilk," %g*age",cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]);/* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
|
/* printf(" %g*age",cotvar[mw[mi][i]][Tvar[Tage[kk]]][i]);/\* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) *\/ */ |
|
} |
|
} |
|
/* printf("\n"); */ |
|
/* } /\* End debugILK *\/ */ |
|
fprintf(ficresilk,"\n"); |
|
} /* End if globpr */ |
} /* end of wave */ |
} /* end of wave */ |
} /* end of individual */ |
} /* end of individual */ |
for(k=1,l=0.; k<=nlstate; k++) l += ll[k]; |
for(k=1,l=0.; k<=nlstate; k++) l += ll[k]; |
Line 4490 void likelione(FILE *ficres,double p[],
|
Line 4550 void likelione(FILE *ficres,double p[],
|
the selection of individuals/waves and |
the selection of individuals/waves and |
to check the exact contribution to the likelihood. |
to check the exact contribution to the likelihood. |
Plotting could be done. |
Plotting could be done. |
*/ |
*/ |
int k; |
void pstamp(FILE *ficres); |
|
int k, kf, kk, ncovv, iposold, ipos; |
|
|
if(*globpri !=0){ /* Just counts and sums, no printings */ |
if(*globpri !=0){ /* Just counts and sums, no printings */ |
strcpy(fileresilk,"ILK_"); |
strcpy(fileresilk,"ILK_"); |
Line 4500 void likelione(FILE *ficres,double p[],
|
Line 4561 void likelione(FILE *ficres,double p[],
|
printf("Problem with resultfile: %s\n", fileresilk); |
printf("Problem with resultfile: %s\n", fileresilk); |
fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk); |
fprintf(ficlog,"Problem with resultfile: %s\n", fileresilk); |
} |
} |
|
pstamp(ficresilk);fprintf(ficresilk,"# model=1+age+%s\n",model); |
fprintf(ficresilk, "#individual(line's_record) count ageb ageend s1 s2 wave# effective_wave# number_of_matrices_product pij weight weight/gpw -2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state(reweighted=-2ll*weightXnumber_of_contribs/sum_of_weights) and_total\n"); |
fprintf(ficresilk, "#individual(line's_record) count ageb ageend s1 s2 wave# effective_wave# number_of_matrices_product pij weight weight/gpw -2ln(pij)*weight 0pij_x 0pij_(x-stepm) cumulating_loglikeli_by_health_state(reweighted=-2ll*weightXnumber_of_contribs/sum_of_weights) and_total\n"); |
fprintf(ficresilk, "#num_i ageb agend i s1 s2 mi mw dh likeli weight %%weight 2wlli out sav "); |
fprintf(ficresilk, "#num_i ageb agend i s1 s2 mi mw dh likeli weight %%weight 2wlli out sav "); |
/* i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */ |
/* i,s1,s2,mi,mw[mi][i],dh[mi][i],exp(lli),weight[i],2*weight[i]*lli,out[s1][s2],savm[s1][s2]); */ |
for(k=1; k<=nlstate; k++) |
for(k=1; k<=nlstate; k++) |
fprintf(ficresilk," -2*gipw/gsw*weight*ll[%d]++",k); |
fprintf(ficresilk," -2*gipw/gsw*weight*ll[%d]++",k); |
fprintf(ficresilk," -2*gipw/gsw*weight*ll(total)\n"); |
fprintf(ficresilk," -2*gipw/gsw*weight*ll(total) "); |
} |
|
|
/* if(debugILK){ /\* debugILK is set by a #d in a comment line *\/ */ |
|
for(kf=1;kf <= ncovf; kf++){ |
|
fprintf(ficresilk,"V%d",Tvar[TvarFind[kf]]); |
|
/* printf("V%d",Tvar[TvarFind[kf]]); */ |
|
} |
|
for(ncovv=1, iposold=0; ncovv <= ncovvt ; ncovv++){ |
|
ipos=TvarVVind[ncovv]; /* TvarVVind={2, 5, 5] gives the position in the model of the ncovv th varying covariate*/ |
|
if(ipos!=iposold){ /* Not a product or first of a product */ |
|
/* printf(" %d",ipos); */ |
|
fprintf(ficresilk," V%d",TvarVV[ncovv]); |
|
}else{ |
|
/* printf("*"); */ |
|
fprintf(ficresilk,"*"); |
|
} |
|
iposold=ipos; |
|
} |
|
for (kk=1; kk<=cptcovage;kk++) { |
|
if(!FixedV[Tvar[Tage[kk]]]){ |
|
/* printf(" %d*age(Fixed)",Tvar[Tage[kk]]); */ |
|
fprintf(ficresilk," %d*age(Fixed)",Tvar[Tage[kk]]); |
|
}else{ |
|
fprintf(ficresilk," %d*age(Varying)",Tvar[Tage[kk]]);/* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
|
/* printf(" %d*age(Varying)",Tvar[Tage[kk]]);/\* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) *\/ */ |
|
} |
|
} |
|
/* } /\* End if debugILK *\/ */ |
|
/* printf("\n"); */ |
|
fprintf(ficresilk,"\n"); |
|
} /* End glogpri */ |
|
|
*fretone=(*func)(p); |
*fretone=(*func)(p); |
if(*globpri !=0){ |
if(*globpri !=0){ |
Line 5249 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 5340 Title=%s <br>Datafile=%s Firstpass=%d La
|
if(anyvaryingduminmodel==1){ /* Some are varying covariates */ |
if(anyvaryingduminmodel==1){ /* Some are varying covariates */ |
for (z1=1; z1<=cptcoveff; z1++) { |
for (z1=1; z1<=cptcoveff; z1++) { |
if( Fixed[Tmodelind[z1]]==1){ |
if( Fixed[Tmodelind[z1]]==1){ |
iv= Tvar[Tmodelind[z1]]-ncovcol-nqv; |
/* iv= Tvar[Tmodelind[z1]]-ncovcol-nqv; /\* Good *\/ */ |
|
iv= Tvar[Tmodelind[z1]]; /* Good *//* because cotvar starts now at first at ncovcol+nqv+ntv */ |
if (cotvar[m][iv][iind]!= nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]) /* iv=1 to ntv, right modality. If covariate's |
if (cotvar[m][iv][iind]!= nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]) /* iv=1 to ntv, right modality. If covariate's |
value is -1, we don't select. It differs from the |
value is -1, we don't select. It differs from the |
constant and age model which counts them. */ |
constant and age model which counts them. */ |
Line 5330 Title=%s <br>Datafile=%s Firstpass=%d La
|
Line 5422 Title=%s <br>Datafile=%s Firstpass=%d La
|
fprintf(ficresphtm, "\n<br/><br/><h3>********** Variable "); |
fprintf(ficresphtm, "\n<br/><br/><h3>********** Variable "); |
fprintf(ficresphtmfr, "\n<br/><br/><h3>********** Variable "); |
fprintf(ficresphtmfr, "\n<br/><br/><h3>********** Variable "); |
fprintf(ficlog, "\n#********** Variable "); |
fprintf(ficlog, "\n#********** Variable "); |
for (z1=1; z1<=cptcovs; z1++){ |
for (z1=1; z1<=cptcoveff; z1++){ |
if(!FixedV[Tvaraff[z1]]){ |
if(!FixedV[Tvaraff[z1]]){ |
printf( "V%d(fixed)=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]); |
printf( "V%d(fixed)=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]); |
fprintf(ficresp, "V%d(fixed)=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]); |
fprintf(ficresp, "V%d(fixed)=%d ",Tvaraff[z1],nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]); |
Line 5786 void prevalence(double ***probs, double
|
Line 5878 void prevalence(double ***probs, double
|
/* Tvar[Tmodelind[z1]] is the n of Vn; n-ncovcol-nqv is the first time varying covariate or iv */ |
/* Tvar[Tmodelind[z1]] is the n of Vn; n-ncovcol-nqv is the first time varying covariate or iv */ |
for (z1=1; z1<=cptcoveff; z1++){ |
for (z1=1; z1<=cptcoveff; z1++){ |
if( Fixed[Tmodelind[z1]]==1){ |
if( Fixed[Tmodelind[z1]]==1){ |
iv= Tvar[Tmodelind[z1]]-ncovcol-nqv; |
iv= Tvar[Tmodelind[z1]];/* because cotvar starts now at first ncovcol+nqv+ (1 to nqtv) */ |
if (cotvar[m][iv][i]!= nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]) /* iv=1 to ntv, right modality */ |
if (cotvar[m][iv][i]!= nbcode[Tvaraff[z1]][codtabm(j1,TnsdVar[Tvaraff[z1]])]) /* iv=1 to ntv, right modality */ |
bool=0; |
bool=0; |
}else if( Fixed[Tmodelind[z1]]== 0) /* fixed */ |
}else if( Fixed[Tmodelind[z1]]== 0) /* fixed */ |
Line 6193 void concatwav(int wav[], int **dh, int
|
Line 6285 void concatwav(int wav[], int **dh, int
|
break; |
break; |
} /* end switch */ |
} /* end switch */ |
} /* end dummy test */ |
} /* end dummy test */ |
if(Dummy[k]==1 && Typevar[k] !=1){ /* Quantitative covariate and not age product */ |
if(Dummy[k]==1 && Typevar[k] !=1 && Fixed ==0){ /* Fixed Quantitative covariate and not age product */ |
for (i=1; i<=imx; i++) { /* Loop on individuals: reads the data file to get the maximum value of the modality of this covariate Vj*/ |
for (i=1; i<=imx; i++) { /* Loop on individuals: reads the data file to get the maximum value of the modality of this covariate Vj*/ |
if(Tvar[k]<=0 || Tvar[k]>=NCOVMAX){ |
if(Tvar[k]<=0 || Tvar[k]>=NCOVMAX){ |
printf("Error k=%d \n",k); |
printf("Error k=%d \n",k); |
Line 7293 To be simple, these graphs help to under
|
Line 7385 To be simple, these graphs help to under
|
|
|
for(nres=1;nres <=nresult; nres++){ /* For each resultline */ |
for(nres=1;nres <=nresult; nres++){ /* For each resultline */ |
for(j1=1; j1<=tj;j1++){ /* For any combination of dummy covariates, fixed and varying */ |
for(j1=1; j1<=tj;j1++){ /* For any combination of dummy covariates, fixed and varying */ |
printf("Varprob TKresult[nres]=%d j1=%d, nres=%d, cptcovn=%d, cptcoveff=%d tj=%d cptcovs=%d\n", TKresult[nres], j1, nres, cptcovn, cptcoveff, tj, cptcovs); |
/* printf("Varprob TKresult[nres]=%d j1=%d, nres=%d, cptcovn=%d, cptcoveff=%d tj=%d cptcovs=%d\n", TKresult[nres], j1, nres, cptcovn, cptcoveff, tj, cptcovs); */ |
if(tj != 1 && TKresult[nres]!= j1) |
if(tj != 1 && TKresult[nres]!= j1) |
continue; |
continue; |
|
|
Line 10317 int readdata(char datafile[], int firsto
|
Line 10409 int readdata(char datafile[], int firsto
|
if(strb[0]=='.') { /* Missing value */ |
if(strb[0]=='.') { /* Missing value */ |
lval=-1; |
lval=-1; |
cotqvar[j][iv][i]=-1; /* 0.0/0.0 */ |
cotqvar[j][iv][i]=-1; /* 0.0/0.0 */ |
cotvar[j][ntv+iv][i]=-1; /* For performance reasons */ |
cotvar[j][ncovcol+nqv+ntv+iv][i]=-1; /* For performance reasons */ |
if(isalpha(strb[1])) { /* .m or .d Really Missing value */ |
if(isalpha(strb[1])) { /* .m or .d Really Missing value */ |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j); |
printf("Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j);fflush(ficlog); |
fprintf(ficlog,"Error reading data around '%s' at line number %d for individual %d, '%s'\nShould be the %d th quantitative value out of %d measured at wave %d. If missing, you should remove this individual or impute a value. Exiting.\n", strb, linei,i,line,iv, nqtv, j);fflush(ficlog); |
Line 10337 int readdata(char datafile[], int firsto
|
Line 10429 int readdata(char datafile[], int firsto
|
return 1; |
return 1; |
} |
} |
cotqvar[j][iv][i]=dval; |
cotqvar[j][iv][i]=dval; |
cotvar[j][ntv+iv][i]=dval; |
cotvar[j][ncovcol+nqv+ntv+iv][i]=dval; /* because cotvar starts now at first ntv */ |
} |
} |
strcpy(line,stra); |
strcpy(line,stra); |
}/* end loop ntqv */ |
}/* end loop ntqv */ |
Line 10377 int readdata(char datafile[], int firsto
|
Line 10469 int readdata(char datafile[], int firsto
|
Exiting.\n",lval,linei, i,line,iv,j);fflush(ficlog); |
Exiting.\n",lval,linei, i,line,iv,j);fflush(ficlog); |
return 1; |
return 1; |
} |
} |
cotvar[j][iv][i]=(double)(lval); |
cotvar[j][ncovcol+nqv+iv][i]=(double)(lval); |
strcpy(line,stra); |
strcpy(line,stra); |
}/* end loop ntv */ |
}/* end loop ntv */ |
|
|
Line 10590 int decoderesult( char resultline[], int
|
Line 10682 int decoderesult( char resultline[], int
|
printf("decoderesult:%s\n",resultline); |
printf("decoderesult:%s\n",resultline); |
|
|
strcpy(resultsav,resultline); |
strcpy(resultsav,resultline); |
printf("Decoderesult resultsav=\"%s\" resultline=\"%s\"\n", resultsav, resultline); |
/* printf("Decoderesult resultsav=\"%s\" resultline=\"%s\"\n", resultsav, resultline); */ |
if (strlen(resultsav) >1){ |
if (strlen(resultsav) >1){ |
j=nbocc(resultsav,'='); /**< j=Number of covariate values'=' in this resultline */ |
j=nbocc(resultsav,'='); /**< j=Number of covariate values'=' in this resultline */ |
} |
} |
Line 10650 int decoderesult( char resultline[], int
|
Line 10742 int decoderesult( char resultline[], int
|
if(Tvar[k1]==Tvarsel[k2]) {/* Tvar is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
if(Tvar[k1]==Tvarsel[k2]) {/* Tvar is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
modelresult[nres][k2]=k1;/* we found a Vn=1 corrresponding to Vn*age in the model modelresult[2]=1 modelresult[1]=2 modelresult[3]=3 modelresult[6]=4 modelresult[9]=5 */ |
modelresult[nres][k2]=k1;/* we found a Vn=1 corrresponding to Vn*age in the model modelresult[2]=1 modelresult[1]=2 modelresult[3]=3 modelresult[6]=4 modelresult[9]=5 */ |
resultmodel[nres][k1]=k2; /* Added here */ |
resultmodel[nres][k1]=k2; /* Added here */ |
printf("Decoderesult first modelresult[k2=%d]=%d (k1) V%d*AGE\n",k2,k1,Tvar[k1]); |
/* printf("Decoderesult first modelresult[k2=%d]=%d (k1) V%d*AGE\n",k2,k1,Tvar[k1]); */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
break; |
break; |
} |
} |
Line 10663 int decoderesult( char resultline[], int
|
Line 10755 int decoderesult( char resultline[], int
|
}else if(Typevar[k1]==2){ /* Product No age We want to get the position in the resultline of the product in the model line*/ |
}else if(Typevar[k1]==2){ /* Product No age We want to get the position in the resultline of the product in the model line*/ |
/* resultmodel[nres][of such a Vn * Vm product k1] is not unique, so can't exist, we feed Tvard[k1][1] and [2] */ |
/* resultmodel[nres][of such a Vn * Vm product k1] is not unique, so can't exist, we feed Tvard[k1][1] and [2] */ |
match=0; |
match=0; |
printf("Decoderesult very first Product Tvardk[k1=%d][1]=%d Tvardk[k1=%d][2]=%d V%d * V%d\n",k1,Tvardk[k1][1],k1,Tvardk[k1][2],Tvardk[k1][1],Tvardk[k1][2]); |
/* printf("Decoderesult very first Product Tvardk[k1=%d][1]=%d Tvardk[k1=%d][2]=%d V%d * V%d\n",k1,Tvardk[k1][1],k1,Tvardk[k1][2],Tvardk[k1][1],Tvardk[k1][2]); */ |
for(k2=1; k2 <=j;k2++){/* Loop on resultline. In result line V4=1 V5=24.1 V3=1 V2=8 V1=0 */ |
for(k2=1; k2 <=j;k2++){/* Loop on resultline. In result line V4=1 V5=24.1 V3=1 V2=8 V1=0 */ |
if(Tvardk[k1][1]==Tvarsel[k2]) {/* Tvardk is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
if(Tvardk[k1][1]==Tvarsel[k2]) {/* Tvardk is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
/* modelresult[k2]=k1; */ |
/* modelresult[k2]=k1; */ |
printf("Decoderesult first Product modelresult[k2=%d]=%d (k1) V%d * \n",k2,k1,Tvarsel[k2]); |
/* printf("Decoderesult first Product modelresult[k2=%d]=%d (k1) V%d * \n",k2,k1,Tvarsel[k2]); */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
} |
} |
} |
} |
Line 10680 int decoderesult( char resultline[], int
|
Line 10772 int decoderesult( char resultline[], int
|
for(k2=1; k2 <=j;k2++){/* Loop on resultline. In result line V4=1 V5=24.1 V3=1 V2=8 V1=0 */ |
for(k2=1; k2 <=j;k2++){/* Loop on resultline. In result line V4=1 V5=24.1 V3=1 V2=8 V1=0 */ |
if(Tvardk[k1][2]==Tvarsel[k2]) {/* Tvardk is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
if(Tvardk[k1][2]==Tvarsel[k2]) {/* Tvardk is coming from the model, Tvarsel from the result. Tvar[1]=5 == Tvarsel[2]=5 */ |
/* modelresult[k2]=k1;*/ |
/* modelresult[k2]=k1;*/ |
printf("Decoderesult second Product modelresult[k2=%d]=%d (k1) * V%d \n ",k2,k1,Tvarsel[k2]); |
/* printf("Decoderesult second Product modelresult[k2=%d]=%d (k1) * V%d \n ",k2,k1,Tvarsel[k2]); */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
match=1; /* modelresult of k2 variable of resultline is identical to k1 variable of the model good */ |
break; |
break; |
} |
} |
Line 10764 int decoderesult( char resultline[], int
|
Line 10856 int decoderesult( char resultline[], int
|
Tvresult[nres][k3]=(int)Tvarsel[k3];/* Tvresult[nres][1]=4 Tvresult[nres][3]=1 */ |
Tvresult[nres][k3]=(int)Tvarsel[k3];/* Tvresult[nres][1]=4 Tvresult[nres][3]=1 */ |
Tinvresult[nres][(int)Tvarsel[k3]]=Tvalsel[k3]; /* Tinvresult[nres][4]=1 */ |
Tinvresult[nres][(int)Tvarsel[k3]]=Tvalsel[k3]; /* Tinvresult[nres][4]=1 */ |
precov[nres][k1]=Tvalsel[k3]; /* Value from resultline of the variable at the k1 position in the model */ |
precov[nres][k1]=Tvalsel[k3]; /* Value from resultline of the variable at the k1 position in the model */ |
printf("Decoderesult Dummy k=%d, k1=%d precov[nres=%d][k1=%d]=%.f V(k2=V%d)= Tvalsel[%d]=%d, 2**(%d)\n",k, k1, nres, k1,precov[nres][k1], k2, k3, (int)Tvalsel[k3], k4); |
/* printf("Decoderesult Dummy k=%d, k1=%d precov[nres=%d][k1=%d]=%.f V(k2=V%d)= Tvalsel[%d]=%d, 2**(%d)\n",k, k1, nres, k1,precov[nres][k1], k2, k3, (int)Tvalsel[k3], k4); */ |
k4++;; |
k4++;; |
}else if( Dummy[k1]==1 && Typevar[k1]==0 ){ /* Quantitative and single */ |
}else if( Dummy[k1]==1 && Typevar[k1]==0 ){ /* Quantitative and single */ |
/* Tqresult[nres][result_position]= value of the variable at the result_position in the nres resultline */ |
/* Tqresult[nres][result_position]= value of the variable at the result_position in the nres resultline */ |
Line 10782 int decoderesult( char resultline[], int
|
Line 10874 int decoderesult( char resultline[], int
|
Tqinvresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* Tqinvresult[nres][5]=25.1 */ |
Tqinvresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* Tqinvresult[nres][5]=25.1 */ |
TinvDoQresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* Tqinvresult[nres][5]=25.1 */ |
TinvDoQresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* Tqinvresult[nres][5]=25.1 */ |
precov[nres][k1]=Tvalsel[k3q]; |
precov[nres][k1]=Tvalsel[k3q]; |
printf("Decoderesult Quantitative nres=%d,precov[nres=%d][k1=%d]=%.f V(k2q=V%d)= Tvalsel[%d]=%d, Tvarsel[%d]=%f\n",nres, nres, k1,precov[nres][k1], k2q, k3q, Tvarsel[k3q], k3q, Tvalsel[k3q]); |
/* printf("Decoderesult Quantitative nres=%d,precov[nres=%d][k1=%d]=%.f V(k2q=V%d)= Tvalsel[%d]=%d, Tvarsel[%d]=%f\n",nres, nres, k1,precov[nres][k1], k2q, k3q, Tvarsel[k3q], k3q, Tvalsel[k3q]); */ |
k4q++;; |
k4q++;; |
}else if( Dummy[k1]==2 ){ /* For dummy with age product */ |
}else if( Dummy[k1]==2 ){ /* For dummy with age product */ |
/* Tvar[k1]; */ /* Age variable */ |
/* Tvar[k1]; */ /* Age variable */ |
Line 10792 int decoderesult( char resultline[], int
|
Line 10884 int decoderesult( char resultline[], int
|
k2=(int)Tvarsel[k3]; /* nres=1 k1=2=>k3=1 Tvarsel[resultmodel[2]]= Tvarsel[1] = 4=k2 (V4); k1=3=>k3=2 Tvarsel[2]=3 (V3)*/ |
k2=(int)Tvarsel[k3]; /* nres=1 k1=2=>k3=1 Tvarsel[resultmodel[2]]= Tvarsel[1] = 4=k2 (V4); k1=3=>k3=2 Tvarsel[2]=3 (V3)*/ |
TinvDoQresult[nres][(int)Tvarsel[k3]]=Tvalsel[k3]; /* TinvDoQresult[nres][4]=1 */ |
TinvDoQresult[nres][(int)Tvarsel[k3]]=Tvalsel[k3]; /* TinvDoQresult[nres][4]=1 */ |
precov[nres][k1]=Tvalsel[k3]; |
precov[nres][k1]=Tvalsel[k3]; |
printf("Decoderesult Dummy with age k=%d, k1=%d precov[nres=%d][k1=%d]=%.f Tvar[%d]=V%d k2=Tvarsel[%d]=%d Tvalsel[%d]=%d\n",k, k1, nres, k1,precov[nres][k1], k1, Tvar[k1], k3,(int)Tvarsel[k3], k3, (int)Tvalsel[k3]); |
/* printf("Decoderesult Dummy with age k=%d, k1=%d precov[nres=%d][k1=%d]=%.f Tvar[%d]=V%d k2=Tvarsel[%d]=%d Tvalsel[%d]=%d\n",k, k1, nres, k1,precov[nres][k1], k1, Tvar[k1], k3,(int)Tvarsel[k3], k3, (int)Tvalsel[k3]); */ |
}else if( Dummy[k1]==3 ){ /* For quant with age product */ |
}else if( Dummy[k1]==3 ){ /* For quant with age product */ |
k3q= resultmodel[nres][k1]; /* resultmodel[1(V5)] = 25.1=k3q */ |
k3q= resultmodel[nres][k1]; /* resultmodel[1(V5)] = 25.1=k3q */ |
k2q=(int)Tvarsel[k3q]; /* Tvarsel[resultmodel[1]]= Tvarsel[1] = 4=k2 */ |
k2q=(int)Tvarsel[k3q]; /* Tvarsel[resultmodel[1]]= Tvarsel[1] = 4=k2 */ |
TinvDoQresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* TinvDoQresult[nres][5]=25.1 */ |
TinvDoQresult[nres][(int)Tvarsel[k3q]]=Tvalsel[k3q]; /* TinvDoQresult[nres][5]=25.1 */ |
precov[nres][k1]=Tvalsel[k3q]; |
precov[nres][k1]=Tvalsel[k3q]; |
printf("Decoderesult Quantitative with age nres=%d, k1=%d, precov[nres=%d][k1=%d]=%f Tvar[%d]=V%d V(k2q=%d)= Tvarsel[%d]=%d, Tvalsel[%d]=%f\n",nres, k1, nres, k1,precov[nres][k1], k1, Tvar[k1], k2q, k3q, Tvarsel[k3q], k3q, Tvalsel[k3q]); |
/* printf("Decoderesult Quantitative with age nres=%d, k1=%d, precov[nres=%d][k1=%d]=%f Tvar[%d]=V%d V(k2q=%d)= Tvarsel[%d]=%d, Tvalsel[%d]=%f\n",nres, k1, nres, k1,precov[nres][k1], k1, Tvar[k1], k2q, k3q, Tvarsel[k3q], k3q, Tvalsel[k3q]); */ |
}else if(Typevar[k1]==2 ){ /* For product quant or dummy (not with age) */ |
}else if(Typevar[k1]==2 ){ /* For product quant or dummy (not with age) */ |
precov[nres][k1]=TinvDoQresult[nres][Tvardk[k1][1]] * TinvDoQresult[nres][Tvardk[k1][2]]; |
precov[nres][k1]=TinvDoQresult[nres][Tvardk[k1][1]] * TinvDoQresult[nres][Tvardk[k1][2]]; |
printf("Decoderesult Quantitative or Dummy (not with age) nres=%d k1=%d precov[nres=%d][k1=%d]=%.f V%d(=%.f) * V%d(=%.f) \n",nres, k1, nres, k1,precov[nres][k1], Tvardk[k1][1], TinvDoQresult[nres][Tvardk[k1][1]], Tvardk[k1][2], TinvDoQresult[nres][Tvardk[k1][2]]); |
/* printf("Decoderesult Quantitative or Dummy (not with age) nres=%d k1=%d precov[nres=%d][k1=%d]=%.f V%d(=%.f) * V%d(=%.f) \n",nres, k1, nres, k1,precov[nres][k1], Tvardk[k1][1], TinvDoQresult[nres][Tvardk[k1][1]], Tvardk[k1][2], TinvDoQresult[nres][Tvardk[k1][2]]); */ |
}else{ |
}else{ |
printf("Error Decoderesult probably a product Dummy[%d]==%d && Typevar[%d]==%d\n", k1, Dummy[k1], k1, Typevar[k1]); |
printf("Error Decoderesult probably a product Dummy[%d]==%d && Typevar[%d]==%d\n", k1, Dummy[k1], k1, Typevar[k1]); |
fprintf(ficlog,"Error Decoderesult probably a product Dummy[%d]==%d && Typevar[%d]==%d\n", k1, Dummy[k1], k1, Typevar[k1]); |
fprintf(ficlog,"Error Decoderesult probably a product Dummy[%d]==%d && Typevar[%d]==%d\n", k1, Dummy[k1], k1, Typevar[k1]); |
Line 11050 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
Line 11142 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
Typevar: 0 for simple covariate (dummy, quantitative, fixed or varying), 1 for age product, 2 for product \n\ |
Typevar: 0 for simple covariate (dummy, quantitative, fixed or varying), 1 for age product, 2 for product \n\ |
Fixed[k] 0=fixed (product or simple), 1 varying, 2 fixed with age product, 3 varying with age product \n\ |
Fixed[k] 0=fixed (product or simple), 1 varying, 2 fixed with age product, 3 varying with age product \n\ |
Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product\n",model); |
Dummy[k] 0=dummy (0 1), 1 quantitative (single or product without age), 2 dummy with age product, 3 quant with age product\n",model); |
for(k=-1;k<=cptcovt; k++){ Fixed[k]=0; Dummy[k]=0;} |
for(k=-1;k<=NCOVMAX; k++){ Fixed[k]=0; Dummy[k]=0;} |
|
for(k=1;k<=NCOVMAX; k++){TvarFind[k]=0; TvarVind[k]=0;} |
for(k=1, ncovf=0, nsd=0, nsq=0, ncovv=0, ncova=0, ncoveff=0, nqfveff=0, ntveff=0, nqtveff=0, ncovvt=0;k<=cptcovt; k++){ /* or cptocvt */ |
for(k=1, ncovf=0, nsd=0, nsq=0, ncovv=0, ncova=0, ncoveff=0, nqfveff=0, ntveff=0, nqtveff=0, ncovvt=0;k<=cptcovt; k++){ /* or cptocvt */ |
if (Tvar[k] <=ncovcol && Typevar[k]==0 ){ /* Simple fixed dummy (<=ncovcol) covariates */ |
if (Tvar[k] <=ncovcol && Typevar[k]==0 ){ /* Simple fixed dummy (<=ncovcol) covariates */ |
Fixed[k]= 0; |
Fixed[k]= 0; |
Line 11139 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
Line 11232 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
TvarVQind[nqtveff]=k; /* TvarVQind[1]=1 in V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ /* Only simple time varying quantitative variable */ |
TvarVQind[nqtveff]=k; /* TvarVQind[1]=1 in V5+V4+V3+V4*V3+V5*age+V2+V1*V2+V1*age+V1 */ /* Only simple time varying quantitative variable */ |
TmodelInvQind[nqtveff]=Tvar[k]- ncovcol-nqv-ntv;/* Only simple time varying quantitative variable */ |
TmodelInvQind[nqtveff]=Tvar[k]- ncovcol-nqv-ntv;/* Only simple time varying quantitative variable */ |
/* Tmodeliqind[k]=nqtveff;/\* Only simple time varying quantitative variable *\/ */ |
/* Tmodeliqind[k]=nqtveff;/\* Only simple time varying quantitative variable *\/ */ |
printf("Quasi TmodelQind[%d]=%d,Tvar[TmodelQind[%d]]=V%d, ncovcol=%d, nqv=%d, ntv=%d,Tvar[k]- ncovcol-nqv-ntv=%d\n",nqtveff,k,nqtveff,Tvar[k], ncovcol, nqv, ntv, Tvar[k]- ncovcol-nqv-ntv); |
/* printf("Quasi TmodelQind[%d]=%d,Tvar[TmodelQind[%d]]=V%d, ncovcol=%d, nqv=%d, ntv=%d,Tvar[k]- ncovcol-nqv-ntv=%d\n",nqtveff,k,nqtveff,Tvar[k], ncovcol, nqv, ntv, Tvar[k]- ncovcol-nqv-ntv); */ |
printf("Quasi TmodelInvQind[%d]=%d\n",k,Tvar[k]- ncovcol-nqv-ntv); |
/* printf("Quasi TmodelInvQind[%d]=%d\n",k,Tvar[k]- ncovcol-nqv-ntv); */ |
}else if (Typevar[k] == 1) { /* product with age */ |
}else if (Typevar[k] == 1) { /* product with age */ |
ncova++; |
ncova++; |
TvarA[ncova]=Tvar[k]; |
TvarA[ncova]=Tvar[k]; |
Line 11322 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
Line 11415 Dummy[k] 0=dummy (0 1), 1 quantitative (
|
printf("Error, current version can't treat for performance reasons, Tvar[%d]=%d, Typevar[%d]=%d\n", k, Tvar[k], k, Typevar[k]); |
printf("Error, current version can't treat for performance reasons, Tvar[%d]=%d, Typevar[%d]=%d\n", k, Tvar[k], k, Typevar[k]); |
fprintf(ficlog,"Error, current version can't treat for performance reasons, Tvar[%d]=%d, Typevar[%d]=%d\n", k, Tvar[k], k, Typevar[k]); |
fprintf(ficlog,"Error, current version can't treat for performance reasons, Tvar[%d]=%d, Typevar[%d]=%d\n", k, Tvar[k], k, Typevar[k]); |
} |
} |
printf("Decodemodel, k=%d, Tvar[%d]=V%d,Typevar=%d, Fixed=%d, Dummy=%d\n",k, k,Tvar[k],Typevar[k],Fixed[k],Dummy[k]); |
/* printf("Decodemodel, k=%d, Tvar[%d]=V%d,Typevar=%d, Fixed=%d, Dummy=%d\n",k, k,Tvar[k],Typevar[k],Fixed[k],Dummy[k]); */ |
printf(" modell[%d].maintype=%d, modell[%d].subtype=%d\n",k,modell[k].maintype,k,modell[k].subtype); |
/* printf(" modell[%d].maintype=%d, modell[%d].subtype=%d\n",k,modell[k].maintype,k,modell[k].subtype); */ |
fprintf(ficlog,"Decodemodel, k=%d, Tvar[%d]=V%d,Typevar=%d, Fixed=%d, Dummy=%d\n",k, k,Tvar[k],Typevar[k],Fixed[k],Dummy[k]); |
fprintf(ficlog,"Decodemodel, k=%d, Tvar[%d]=V%d,Typevar=%d, Fixed=%d, Dummy=%d\n",k, k,Tvar[k],Typevar[k],Fixed[k],Dummy[k]); |
} |
} |
/* Searching for doublons in the model */ |
/* Searching for doublons in the model */ |
Line 12477 int main(int argc, char *argv[])
|
Line 12570 int main(int argc, char *argv[])
|
numlinepar++; |
numlinepar++; |
if(line[1]=='q'){ /* This #q will quit imach (the answer is q) */ |
if(line[1]=='q'){ /* This #q will quit imach (the answer is q) */ |
z[0]=line[1]; |
z[0]=line[1]; |
|
}else if(line[1]=='d'){ /* For debugging individual values of covariates in ficresilk */ |
|
debugILK=1; |
} |
} |
/* printf("****line [1] = %c \n",line[1]); */ |
/* printf("****line [1] = %c \n",line[1]); */ |
fputs(line, stdout); |
fputs(line, stdout); |
Line 12490 int main(int argc, char *argv[])
|
Line 12585 int main(int argc, char *argv[])
|
covar=matrix(0,NCOVMAX,firstobs,lastobs); /**< used in readdata */ |
covar=matrix(0,NCOVMAX,firstobs,lastobs); /**< used in readdata */ |
if(nqv>=1)coqvar=matrix(1,nqv,firstobs,lastobs); /**< Fixed quantitative covariate */ |
if(nqv>=1)coqvar=matrix(1,nqv,firstobs,lastobs); /**< Fixed quantitative covariate */ |
if(nqtv>=1)cotqvar=ma3x(1,maxwav,1,nqtv,firstobs,lastobs); /**< Time varying quantitative covariate */ |
if(nqtv>=1)cotqvar=ma3x(1,maxwav,1,nqtv,firstobs,lastobs); /**< Time varying quantitative covariate */ |
if(ntv+nqtv>=1)cotvar=ma3x(1,maxwav,1,ntv+nqtv,firstobs,lastobs); /**< Time varying covariate (dummy and quantitative)*/ |
/* if(ntv+nqtv>=1)cotvar=ma3x(1,maxwav,1,ntv+nqtv,firstobs,lastobs); /\**< Time varying covariate (dummy and quantitative)*\/ */ |
|
if(ntv+nqtv>=1)cotvar=ma3x(1,maxwav,ncovcol+nqv+1,ncovcol+nqv+ntv+nqtv,firstobs,lastobs); /**< Might be better */ |
cptcovn=0; /*Number of covariates, i.e. number of '+' in model statement plus one, indepently of n in Vn*/ |
cptcovn=0; /*Number of covariates, i.e. number of '+' in model statement plus one, indepently of n in Vn*/ |
/* v1+v2+v3+v2*v4+v5*age makes cptcovn = 5 |
/* v1+v2+v3+v2*v4+v5*age makes cptcovn = 5 |
v1+v2*age+v2*v3 makes cptcovn = 3 |
v1+v2*age+v2*v3 makes cptcovn = 3 |
Line 13774 Please run with mle=-1 to get a correct
|
Line 13870 Please run with mle=-1 to get a correct
|
case 13: |
case 13: |
num_filled=sscanf(line,"result:%[^\n]\n",resultlineori); |
num_filled=sscanf(line,"result:%[^\n]\n",resultlineori); |
nresult++; /* Sum of resultlines */ |
nresult++; /* Sum of resultlines */ |
printf("Result %d: result:%s\n",nresult, resultlineori); |
/* printf("Result %d: result:%s\n",nresult, resultlineori); */ |
/* removefirstspace(&resultlineori); */ |
/* removefirstspace(&resultlineori); */ |
|
|
if(strstr(resultlineori,"v") !=0){ |
if(strstr(resultlineori,"v") !=0){ |
Line 13783 Please run with mle=-1 to get a correct
|
Line 13879 Please run with mle=-1 to get a correct
|
return 1; |
return 1; |
} |
} |
trimbb(resultline, resultlineori); /* Suppressing double blank in the resultline */ |
trimbb(resultline, resultlineori); /* Suppressing double blank in the resultline */ |
printf("Decoderesult resultline=\"%s\" resultlineori=\"%s\"\n", resultline, resultlineori); |
/* printf("Decoderesult resultline=\"%s\" resultlineori=\"%s\"\n", resultline, resultlineori); */ |
if(nresult > MAXRESULTLINESPONE-1){ |
if(nresult > MAXRESULTLINESPONE-1){ |
printf("ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\nYou can use the 'r' parameter file '%s' which uses option mle=0 to get other results. ",MAXRESULTLINESPONE-1,nresult,rfileres); |
printf("ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\nYou can use the 'r' parameter file '%s' which uses option mle=0 to get other results. ",MAXRESULTLINESPONE-1,nresult,rfileres); |
fprintf(ficlog,"ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\nYou can use the 'r' parameter file '%s' which uses option mle=0 to get other results. ",MAXRESULTLINESPONE-1,nresult,rfileres); |
fprintf(ficlog,"ERROR: Current version of IMaCh limits the number of resultlines to %d, you used %d\nYou can use the 'r' parameter file '%s' which uses option mle=0 to get other results. ",MAXRESULTLINESPONE-1,nresult,rfileres); |
Line 14120 Please run with mle=-1 to get a correct
|
Line 14216 Please run with mle=-1 to get a correct
|
/* Tvresult[nres][j] Name of the variable at position j in this resultline */ |
/* Tvresult[nres][j] Name of the variable at position j in this resultline */ |
/* Tresult[nres][j] Value of this variable at position j could be a float if quantitative */ |
/* Tresult[nres][j] Value of this variable at position j could be a float if quantitative */ |
/* We give up with the combinations!! */ |
/* We give up with the combinations!! */ |
printf("\n j=%d In computing T_ Dummy[modelresult[%d][%d]]=%d, modelresult[%d][%d]=%d cptcovs=%d, cptcoveff=%d Fixed[modelresult[nres][j]]=%d\n", j, nres, j, Dummy[modelresult[nres][j]],nres,j,modelresult[nres][j],cptcovs, cptcoveff,Fixed[modelresult[nres][j]]); /* end if dummy or quanti */ |
/* if(debugILK) */ |
|
/* printf("\n j=%d In computing T_ Dummy[modelresult[%d][%d]]=%d, modelresult[%d][%d]=%d cptcovs=%d, cptcoveff=%d Fixed[modelresult[nres][j]]=%d\n", j, nres, j, Dummy[modelresult[nres][j]],nres,j,modelresult[nres][j],cptcovs, cptcoveff,Fixed[modelresult[nres][j]]); /\* end if dummy or quanti *\/ */ |
|
|
if(Dummy[modelresult[nres][j]]==0){/* Dummy variable of the variable in position modelresult in the model corresponding to j in resultline */ |
if(Dummy[modelresult[nres][j]]==0){/* Dummy variable of the variable in position modelresult in the model corresponding to j in resultline */ |
printf("V%d=%lg ",Tvresult[nres][j],TinvDoQresult[nres][j]); /* Output of each value for the combination TKresult[nres], ordere by the covariate values in the resultline */ |
printf("V%d=%lg ",Tvresult[nres][j],TinvDoQresult[nres][j]); /* Output of each value for the combination TKresult[nres], ordere by the covariate values in the resultline */ |
Line 14294 Please run with mle=-1 to get a correct
|
Line 14391 Please run with mle=-1 to get a correct
|
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(oldms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(newms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(savms, 1,nlstate+ndeath,1,nlstate+ndeath); |
free_matrix(savms, 1,nlstate+ndeath,1,nlstate+ndeath); |
if(ntv+nqtv>=1)free_ma3x(cotvar,1,maxwav,1,ntv+nqtv,firstobs,lastobs); |
/* if(ntv+nqtv>=1)free_ma3x(cotvar,1,maxwav,1,ntv+nqtv,firstobs,lastobs); */ |
|
if(ntv+nqtv>=1)free_ma3x(cotvar,1,maxwav,ncovcol+nqv+1,ncovcol+nqv+ntv+nqtv,firstobs,lastobs); |
if(nqtv>=1)free_ma3x(cotqvar,1,maxwav,1,nqtv,firstobs,lastobs); |
if(nqtv>=1)free_ma3x(cotqvar,1,maxwav,1,nqtv,firstobs,lastobs); |
if(nqv>=1)free_matrix(coqvar,1,nqv,firstobs,lastobs); |
if(nqv>=1)free_matrix(coqvar,1,nqv,firstobs,lastobs); |
free_matrix(covar,0,NCOVMAX,firstobs,lastobs); |
free_matrix(covar,0,NCOVMAX,firstobs,lastobs); |