version 1.17, 2002/02/20 17:15:02
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version 1.18, 2002/02/20 17:17:09
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Line 1150 void lubksb(double **a, int n, int *indx
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Line 1150 void lubksb(double **a, int n, int *indx
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}
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}
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/************ Frequencies ********************/
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/************ Frequencies ********************/
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void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1,double **mint,double **anint)
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void freqsummary(char fileres[], int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1,double **mint,double **anint, int boolprev, double dateprev1,double dateprev2)
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{ /* Some frequencies */
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{ /* Some frequencies */
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int i, m, jk, k1, k2,i1, j1, bool, z1,z2,j;
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int i, m, jk, k1,i1, j1, bool, z1,z2,j;
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double ***freq; /* Frequencies */
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double ***freq; /* Frequencies */
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double *pp;
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double *pp;
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double pos;
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double pos, k2;
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FILE *ficresp;
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FILE *ficresp;
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char fileresp[FILENAMELENGTH];
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char fileresp[FILENAMELENGTH];
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Line 1191 void freqsummary(char fileres[], int ag
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Line 1191 void freqsummary(char fileres[], int ag
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if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]])
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if (covar[Tvaraff[z1]][i]!= nbcode[Tvaraff[z1]][codtab[j1][z1]])
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bool=0;
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bool=0;
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}
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}
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if (bool==1) {
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if (bool==1) {
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for(m=fprev1; m<=lprev1; m++){
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if (boolprev==1){
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for(m=fprev1; m<=lprev1; m++){
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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}
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}
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else {
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for(m=firstpass; m<=lastpass; m++){
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k2=anint[m][i]+(mint[m][i]/12.);
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k2=anint[m][i]+(mint[m][i]/12.);
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if ((k2>=1984) && (k2<=1988.5)) {
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if ((k2>=dateprev1) && (k2<=dateprev2)) {
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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}
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}
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}
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}
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}
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}
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}
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}
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}
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if (cptcovn>0) {
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if (cptcovn>0) {
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Line 1269 void freqsummary(char fileres[], int ag
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Line 1279 void freqsummary(char fileres[], int ag
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} /* End of Freq */
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} /* End of Freq */
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/************ Prevalence ********************/
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/************ Prevalence ********************/
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void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1)
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void prevalence(int agemin, int agemax, int **s, double **agev, int nlstate, int imx, int *Tvar, int **nbcode, int *ncodemax, int fprev1,int lprev1, double **mint,double **anint,int boolprev, double dateprev1, double dateprev2)
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{ /* Some frequencies */
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{ /* Some frequencies */
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int i, m, jk, k1, i1, j1, bool, z1,z2,j;
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int i, m, jk, k1, i1, j1, bool, z1,z2,j;
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double ***freq; /* Frequencies */
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double ***freq; /* Frequencies */
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double *pp;
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double *pp;
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double pos;
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double pos, k2;
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pp=vector(1,nlstate);
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pp=vector(1,nlstate);
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probs= ma3x(1,130 ,1,8, 1,8);
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probs= ma3x(1,130 ,1,8, 1,8);
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Line 1303 void prevalence(int agemin, int agemax,
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Line 1313 void prevalence(int agemin, int agemax,
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bool=0;
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bool=0;
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}
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}
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if (bool==1) {
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if (bool==1) {
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for(m=fprev1; m<=lprev1; m++){
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if (boolprev==1){
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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for(m=fprev1; m<=lprev1; m++){
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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}
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}
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else {
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for(m=firstpass; m<=lastpass; m++){
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k2=anint[m][i]+(mint[m][i]/12.);
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if ((k2>=dateprev1) && (k2<=dateprev2)) {
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if(agev[m][i]==0) agev[m][i]=agemax+1;
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if(agev[m][i]==1) agev[m][i]=agemax+2;
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freq[s[m][i]][s[m+1][i]][(int)agev[m][i]] += weight[i];
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freq[s[m][i]][s[m+1][i]][(int) agemax+3] += weight[i];
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}
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}
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}
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}
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}
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}
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}
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}
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for(i=(int)agemin; i <= (int)agemax+3; i++){
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for(i=(int)agemin; i <= (int)agemax+3; i++){
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for(jk=1; jk <=nlstate ; jk++){
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for(jk=1; jk <=nlstate ; jk++){
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for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
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for(m=-1, pp[jk]=0; m <=nlstate+ndeath ; m++)
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pp[jk] += freq[jk][m][i];
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pp[jk] += freq[jk][m][i];
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}
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}
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for(jk=1; jk <=nlstate ; jk++){
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for(jk=1; jk <=nlstate ; jk++){
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for(m=-1, pos=0; m <=0 ; m++)
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for(m=-1, pos=0; m <=0 ; m++)
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pos += freq[jk][m][i];
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pos += freq[jk][m][i];
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}
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}
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Line 1336 void prevalence(int agemin, int agemax,
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Line 1359 void prevalence(int agemin, int agemax,
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}
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}
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}
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}
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}
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}
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}
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}
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}
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}
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Line 1873 int main()
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Line 1896 int main()
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int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;
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int jnais,jdc,jint4,jint1,jint2,jint3,**outcome,**adl,*tab;
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int mobilav=0, fprev, lprev ,fprevfore=1, lprevfore=1,nforecast,popforecast=0;
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int mobilav=0, fprev, lprev ,fprevfore=1, lprevfore=1,nforecast,popforecast=0;
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int hstepm, nhstepm;
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int hstepm, nhstepm;
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int *popage;
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int *popage,boolprev=0;/*boolprev=0 if date and zero if wave*/
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double bage, fage, age, agelim, agebase;
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double bage, fage, age, agelim, agebase;
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double ftolpl=FTOL;
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double ftolpl=FTOL;
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Line 1889 int main()
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Line 1912 int main()
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double *epj, vepp;
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double *epj, vepp;
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double kk1, kk2;
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double kk1, kk2;
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double *popeffectif,*popcount;
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double *popeffectif,*popcount;
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double dateprev1, dateprev2;
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char version[80]="Imach version 64b, May 2001, INED-EUROREVES ";
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char version[80]="Imach version 64b, May 2001, INED-EUROREVES ";
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char *alph[]={"a","a","b","c","d","e"}, str[4];
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char *alph[]={"a","a","b","c","d","e"}, str[4];
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Line 1898 int main()
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Line 1922 int main()
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#include <sys/time.h>
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#include <sys/time.h>
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#include <time.h>
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#include <time.h>
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char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];
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char stra[80], strb[80], strc[80], strd[80],stre[80],modelsav[80];
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char strfprev[10], strlprev[10];
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char strfprevfore[10], strlprevfore[10];
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/* long total_usecs;
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/* long total_usecs;
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struct timeval start_time, end_time;
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struct timeval start_time, end_time;
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Line 1960 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 1986 while((c=getc(ficpar))=='#' && c!= EOF){
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}
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}
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ungetc(c,ficpar);
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ungetc(c,ficpar);
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fscanf(ficpar,"fprevalence=%d lprevalence=%d pop_based=%d\n",&fprev,&lprev,&popbased);
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fscanf(ficpar,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,&popbased);
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fprintf(ficparo,"fprevalence=%d lprevalence=%d pop_based=%d\n",fprev,lprev,popbased);
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fprintf(ficparo,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,popbased);
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/* printf("%s %s",strfprev,strlprev);
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exit(0);*/
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while((c=getc(ficpar))=='#' && c!= EOF){
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while((c=getc(ficpar))=='#' && c!= EOF){
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ungetc(c,ficpar);
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ungetc(c,ficpar);
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fgets(line, MAXLINE, ficpar);
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fgets(line, MAXLINE, ficpar);
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Line 1971 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 1999 while((c=getc(ficpar))=='#' && c!= EOF){
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}
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}
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ungetc(c,ficpar);
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ungetc(c,ficpar);
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fscanf(ficpar,"fprevalence=%d lprevalence=%d nforecast=%d mob_average=%d\n",&fprevfore,&lprevfore,&nforecast,&mobilav);
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fscanf(ficpar,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,&nforecast,&mobilav);
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fprintf(ficparo,"fprevalence=%d lprevalence=%d nforecast=%d mob_average=%d\n",fprevfore,lprevfore,nforecast,mobilav);
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fprintf(ficparo,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,nforecast,mobilav);
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while((c=getc(ficpar))=='#' && c!= EOF){
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while((c=getc(ficpar))=='#' && c!= EOF){
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Line 2329 printf("Total number of individuals= %d,
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Line 2357 printf("Total number of individuals= %d,
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/* Calculates basic frequencies. Computes observed prevalence at single age
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/* Calculates basic frequencies. Computes observed prevalence at single age
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and prints on file fileres'p'. */
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and prints on file fileres'p'. */
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freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprev, lprev,mint,anint);
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if ((nbocc(strfprev,'/')==1) && (nbocc(strlprev,'/')==1)){
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free_matrix(mint,1,maxwav,1,n);
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boolprev=0;
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free_matrix(anint,1,maxwav,1,n);
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cutv(stra,strb,strfprev,'/');
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dateprev1=(double)(atoi(strb)+atoi(stra)/12.);
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cutv(stra,strb,strlprev,'/');
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dateprev2=(double)(atoi(strb)+atoi(stra)/12.);
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}
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else if ((nbocc(strfprev,'/')==0) &&(nbocc(strlprev,'/')==0)){
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boolprev=1;
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fprev=atoi(strfprev); lprev=atoi(strlprev);
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}
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else {
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printf("Error in statement lprevalence or fprevalence\n");
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goto end;
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}
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freqsummary(fileres, agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprev, lprev,mint,anint,boolprev,dateprev1,dateprev2);
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pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
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pmmij= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
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oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
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oldms= matrix(1,nlstate+ndeath,1,nlstate+ndeath); /* creation */
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Line 2350 printf("Total number of individuals= %d,
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Line 2393 printf("Total number of individuals= %d,
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/*--------- results files --------------*/
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/*--------- results files --------------*/
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fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model);
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fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, mle,weightopt,model);
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fprintf(ficres,"fprevalence=%d lprevalence=%d pop_based=%d\n",fprev,lprev,popbased);
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fprintf(ficres,"fprevalence=%s lprevalence=%s pop_based=%d\n",strfprev,strlprev,popbased);
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fprintf(ficres,"fprevalence=%d lprevalence=%d nforecast=%d mob_average=%d\n",fprevfore,lprevfore,nforecast,mobilav);
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fprintf(ficres,"fprevalence=%s lprevalence=%s nforecast=%d mob_average=%d\n",strfprevfore,strlprevfore,nforecast,mobilav);
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jk=1;
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jk=1;
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fprintf(ficres,"# Parameters\n");
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fprintf(ficres,"# Parameters\n");
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Line 2393 printf("Total number of individuals= %d,
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Line 2436 printf("Total number of individuals= %d,
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fprintf(ficres,"\n");
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fprintf(ficres,"\n");
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}
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}
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}
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}
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}
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}
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k=1;
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k=1;
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fprintf(ficres,"# Covariance\n");
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fprintf(ficres,"# Covariance\n");
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Line 2649 Interval (in months) between two waves:
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Line 2692 Interval (in months) between two waves:
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- Variances of life expectancies by age and initial health status: <a href=\"v%s\">v%s</a><br>
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- Variances of life expectancies by age and initial health status: <a href=\"v%s\">v%s</a><br>
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- Health expectancies with their variances: <a href=\"t%s\">t%s</a> <br>
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- Health expectancies with their variances: <a href=\"t%s\">t%s</a> <br>
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- Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br>
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- Standard deviation of stationary prevalences: <a href=\"vpl%s\">vpl%s</a> <br>
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- Prevalences forecasting: <a href=\"f%s\">f%s</a> <br>
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- Prevalences and population forecasting: <a href=\"f%s\">f%s</a> <br>
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<br>",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);
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<br>",title,datafile,firstpass,lastpass,stepm, weightopt,model,imx,jmin,jmax,jmean,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres,fileres);
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fprintf(fichtm," <li>Graphs</li><p>");
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fprintf(fichtm," <li>Graphs</li><p>");
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Line 2797 fclose(fichtm);
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Line 2840 fclose(fichtm);
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}
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}
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printf("Computing forecasting: result on file '%s' \n", fileresf);
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printf("Computing forecasting: result on file '%s' \n", fileresf);
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prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprevfore, lprevfore);
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if ((nbocc(strfprevfore,'/')==1) && (nbocc(strlprevfore,'/')==1)){
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boolprev=0;
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cutv(stra,strb,strfprevfore,'/');
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dateprev1=(double)(atoi(strb)+atoi(stra)/12.);
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cutv(stra,strb,strlprevfore,'/');
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dateprev2=(double)(atoi(strb)+atoi(stra)/12.);
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}
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else if ((nbocc(strfprevfore,'/')==0) &&(nbocc(strlprevfore,'/')==0)){
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boolprev=1;
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fprev=atoi(strfprevfore); lprev=atoi(strlprevfore);
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}
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else {
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printf("Error in statement lprevalence or fprevalence\n");
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goto end;
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}
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free_matrix(agev,1,maxwav,1,imx);
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prevalence(agemin, agemax, s, agev, nlstate, imx,Tvar,nbcode, ncodemax, fprevfore, lprevfore,mint,anint,boolprev,dateprev1,dateprev2);
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free_matrix(mint,1,maxwav,1,n);
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free_matrix(anint,1,maxwav,1,n);
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free_matrix(agev,1,maxwav,1,imx);
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/* Mobile average */
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/* Mobile average */
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if (cptcoveff==0) ncodemax[cptcoveff]=1;
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if (cptcoveff==0) ncodemax[cptcoveff]=1;
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