version 1.32, 2002/03/11 14:17:15
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version 1.34, 2002/03/13 17:19:16
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Line 82 int cptcovn, cptcovage=0, cptcoveff=0,cp
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Line 82 int cptcovn, cptcovage=0, cptcoveff=0,cp
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int npar=NPARMAX;
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int npar=NPARMAX;
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int nlstate=2; /* Number of live states */
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int nlstate=2; /* Number of live states */
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int ndeath=1; /* Number of dead states */
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int ndeath=1; /* Number of dead states */
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int ncovmodel, ncov; /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */
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int ncovmodel, ncovcol; /* Total number of covariables including constant a12*1 +b12*x ncovmodel=2 */
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int popbased=0;
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int popbased=0;
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int *wav; /* Number of waves for this individuual 0 is possible */
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int *wav; /* Number of waves for this individuual 0 is possible */
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Line 1513 void tricode(int *Tvar, int **nbcode, in
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Line 1513 void tricode(int *Tvar, int **nbcode, in
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ij=1;
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ij=1;
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for (i=1; i<=10; i++) {
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for (i=1; i<=10; i++) {
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if((Ndum[i]!=0) && (i<=ncov)){
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if((Ndum[i]!=0) && (i<=ncovcol)){
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Tvaraff[ij]=i;
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Tvaraff[ij]=i;
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ij++;
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ij++;
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}
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}
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Line 1559 void evsij(char fileres[], double ***eij
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Line 1559 void evsij(char fileres[], double ***eij
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/* nhstepm age range expressed in number of stepm */
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/* nhstepm age range expressed in number of stepm */
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nstepm=(int) rint((agelim-age)*YEARM/stepm);
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nstepm=(int) rint((agelim-age)*YEARM/stepm);
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/* Typically if 20 years nstepm = 20*12/6=40 stepm */
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/* Typically if 20 years nstepm = 20*12/6=40 stepm */
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if (stepm >= YEARM) hstepm=1;
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/* if (stepm >= YEARM) hstepm=1;*/
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nhstepm = nstepm/hstepm;/* Expressed in hstepm, typically nhstepm=40/4=10 */
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nhstepm = nstepm/hstepm;/* Expressed in hstepm, typically nhstepm=40/4=10 */
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p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
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p3mat=ma3x(1,nlstate+ndeath,1, nlstate+ndeath, 0,nhstepm);
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/* Computed by stepm unit matrices, product of hstepm matrices, stored
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/* Computed by stepm unit matrices, product of hstepm matrices, stored
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Line 1903 void printinghtml(char fileres[], char t
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Line 1903 void printinghtml(char fileres[], char t
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printf("Problem with %s \n",optionfilehtm), exit(0);
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printf("Problem with %s \n",optionfilehtm), exit(0);
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}
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}
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fprintf(fichtm,"<body><ul> <font size=\"6\">Imach, Version 0.71c </font> <hr size=\"2\" color=\"#EC5E5E\">
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fprintf(fichtm,"<body><ul> <font size=\"6\">Imach, Version 0.8 </font> <hr size=\"2\" color=\"#EC5E5E\">
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Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>
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Title=%s <br>Datafile=%s Firstpass=%d Lastpass=%d Stepm=%d Weight=%d Model=%s<br>
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Total number of observations=%d <br>
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Total number of observations=%d <br>
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Line 2466 int main(int argc, char *argv[])
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Line 2466 int main(int argc, char *argv[])
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double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2;
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double dateprev1, dateprev2,jproj1,mproj1,anproj1,jproj2,mproj2,anproj2;
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char version[80]="Imach version 0.71c, March 2002, INED-EUROREVES ";
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char version[80]="Imach version 0.8, March 2002, INED-EUROREVES ";
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char *alph[]={"a","a","b","c","d","e"}, str[4];
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char *alph[]={"a","a","b","c","d","e"}, str[4];
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Line 2527 int main(int argc, char *argv[])
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Line 2527 int main(int argc, char *argv[])
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}
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}
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ungetc(c,ficpar);
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ungetc(c,ficpar);
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fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncov, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model);
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fscanf(ficpar,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%lf stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n",title, datafile, &lastobs, &firstpass,&lastpass,&ftol, &stepm, &ncovcol, &nlstate,&ndeath, &maxwav, &mle, &weightopt,model);
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printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate,ndeath, maxwav, mle, weightopt,model);
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printf("title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncovcol, nlstate,ndeath, maxwav, mle, weightopt,model);
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fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncov,nlstate,ndeath,maxwav, mle, weightopt,model);
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fprintf(ficparo,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle=%d weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol,stepm,ncovcol,nlstate,ndeath,maxwav, mle, weightopt,model);
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while((c=getc(ficpar))=='#' && c!= EOF){
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while((c=getc(ficpar))=='#' && c!= EOF){
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ungetc(c,ficpar);
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ungetc(c,ficpar);
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fgets(line, MAXLINE, ficpar);
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fgets(line, MAXLINE, ficpar);
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Line 2686 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 2686 while((c=getc(ficpar))=='#' && c!= EOF){
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cutv(stra, strb,line,' '); moisnais[i]=(double)(atoi(strb)); strcpy(line,stra);
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cutv(stra, strb,line,' '); moisnais[i]=(double)(atoi(strb)); strcpy(line,stra);
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cutv(stra, strb,line,' '); weight[i]=(double)(atoi(strb)); strcpy(line,stra);
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cutv(stra, strb,line,' '); weight[i]=(double)(atoi(strb)); strcpy(line,stra);
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for (j=ncov;j>=1;j--){
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for (j=ncovcol;j>=1;j--){
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cutv(stra, strb,line,' '); covar[j][i]=(double)(atoi(strb)); strcpy(line,stra);
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cutv(stra, strb,line,' '); covar[j][i]=(double)(atoi(strb)); strcpy(line,stra);
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}
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}
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num[i]=atol(stra);
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num[i]=atol(stra);
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Line 2755 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 2755 while((c=getc(ficpar))=='#' && c!= EOF){
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}
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}
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else {
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else {
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cutv(strb,stre,strc,'V');
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cutv(strb,stre,strc,'V');
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Tvar[i]=ncov+k1;
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Tvar[i]=ncovcol+k1;
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cutv(strb,strc,strd,'V');
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cutv(strb,strc,strd,'V');
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Tprod[k1]=i;
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Tprod[k1]=i;
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Tvard[k1][1]=atoi(strc);
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Tvard[k1][1]=atoi(strc);
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Line 2763 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 2763 while((c=getc(ficpar))=='#' && c!= EOF){
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Tvar[cptcovn+k2]=Tvard[k1][1];
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Tvar[cptcovn+k2]=Tvard[k1][1];
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Tvar[cptcovn+k2+1]=Tvard[k1][2];
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Tvar[cptcovn+k2+1]=Tvard[k1][2];
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for (k=1; k<=lastobs;k++)
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for (k=1; k<=lastobs;k++)
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covar[ncov+k1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k];
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covar[ncovcol+k1][k]=covar[atoi(stre)][k]*covar[atoi(strc)][k];
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k1++;
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k1++;
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k2=k2+2;
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k2=k2+2;
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}
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}
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Line 2917 printf("Total number of individuals= %d,
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Line 2917 printf("Total number of individuals= %d,
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}
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}
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/*--------- results files --------------*/
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/*--------- results files --------------*/
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fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncov=%d nlstate=%d ndeath=%d maxwav=%d mle= 0 weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncov, nlstate, ndeath, maxwav, weightopt,model);
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fprintf(ficres,"title=%s datafile=%s lastobs=%d firstpass=%d lastpass=%d\nftol=%e stepm=%d ncovcol=%d nlstate=%d ndeath=%d maxwav=%d mle= 0 weight=%d\nmodel=%s\n", title, datafile, lastobs, firstpass,lastpass,ftol, stepm, ncovcol, nlstate, ndeath, maxwav, weightopt,model);
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jk=1;
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jk=1;
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fprintf(ficres,"# Parameters\n");
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fprintf(ficres,"# Parameters nlstate*nlstate*ncov a12*1 + b12 * age + ...\n");
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printf("# Parameters\n");
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printf("# Parameters nlstate*nlstate*ncov a12*1 + b12 * age + ...\n");
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for(i=1,jk=1; i <=nlstate; i++){
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for(i=1,jk=1; i <=nlstate; i++){
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for(k=1; k <=(nlstate+ndeath); k++){
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for(k=1; k <=(nlstate+ndeath); k++){
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if (k != i)
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if (k != i)
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Line 2944 printf("Total number of individuals= %d,
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Line 2944 printf("Total number of individuals= %d,
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ftolhess=ftol; /* Usually correct */
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ftolhess=ftol; /* Usually correct */
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hesscov(matcov, p, npar, delti, ftolhess, func);
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hesscov(matcov, p, npar, delti, ftolhess, func);
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}
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}
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fprintf(ficres,"# Scales\n");
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fprintf(ficres,"# Scales (for hessian or gradient estimation)\n");
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printf("# Scales\n");
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printf("# Scales (for hessian or gradient estimation)\n");
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for(i=1,jk=1; i <=nlstate; i++){
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for(i=1,jk=1; i <=nlstate; i++){
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for(j=1; j <=nlstate+ndeath; j++){
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for(j=1; j <=nlstate+ndeath; j++){
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if (j!=i) {
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if (j!=i) {
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Line 2963 printf("Total number of individuals= %d,
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Line 2963 printf("Total number of individuals= %d,
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}
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}
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k=1;
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k=1;
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fprintf(ficres,"# Covariance\n");
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fprintf(ficres,"# Covariance matrix \n# 121 Var(a12)\n# 122 Cov(b12,a12) Var(b12)\n# ...\n# 232 Cov(b23,a12) Cov(b23,b12) ... Var (b23)\n");
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printf("# Covariance\n");
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printf("# Covariance matrix \n# 121 Var(a12)\n# 122 Cov(b12,a12) Var(b12)\n# ...\n# 232 Cov(b23,a12) Cov(b23,b12) ... Var (b23)\n");
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for(i=1;i<=npar;i++){
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for(i=1;i<=npar;i++){
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/* if (k>nlstate) k=1;
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/* if (k>nlstate) k=1;
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i1=(i-1)/(ncovmodel*nlstate)+1;
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i1=(i-1)/(ncovmodel*nlstate)+1;
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Line 3243 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 3243 while((c=getc(ficpar))=='#' && c!= EOF){
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for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i);
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for (i=1;i<=nlstate;i++) fprintf(ficrest,"e.%d (std) ",i);
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fprintf(ficrest,"\n");
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fprintf(ficrest,"\n");
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hf=1;
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if (stepm >= YEARM) hf=stepm/YEARM;
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epj=vector(1,nlstate+1);
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epj=vector(1,nlstate+1);
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for(age=bage; age <=fage ;age++){
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for(age=bage; age <=fage ;age++){
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prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k);
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prevalim(prlim, nlstate, p, age, oldm, savm,ftolpl,k);
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Line 3253 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 3251 while((c=getc(ficpar))=='#' && c!= EOF){
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prlim[i][i]=probs[(int)age][i][k];
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prlim[i][i]=probs[(int)age][i][k];
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}
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}
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fprintf(ficrest," %.0f",age);
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fprintf(ficrest," %4.0f",age);
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for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){
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for(j=1, epj[nlstate+1]=0.;j <=nlstate;j++){
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for(i=1, epj[j]=0.;i <=nlstate;i++) {
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for(i=1, epj[j]=0.;i <=nlstate;i++) {
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epj[j] += prlim[i][i]*hf*eij[i][j][(int)age];
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epj[j] += prlim[i][i]*eij[i][j][(int)age];
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}
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}
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epj[nlstate+1] +=epj[j];
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epj[nlstate+1] +=epj[j];
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}
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}
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for(i=1, vepp=0.;i <=nlstate;i++)
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for(i=1, vepp=0.;i <=nlstate;i++)
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for(j=1;j <=nlstate;j++)
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for(j=1;j <=nlstate;j++)
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vepp += vareij[i][j][(int)age];
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vepp += vareij[i][j][(int)age];
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fprintf(ficrest," %.2f (%.2f)", epj[nlstate+1],hf*sqrt(vepp));
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fprintf(ficrest," %7.2f (%7.2f)", epj[nlstate+1],sqrt(vepp));
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for(j=1;j <=nlstate;j++){
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for(j=1;j <=nlstate;j++){
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fprintf(ficrest," %.2f (%.2f)", epj[j],hf*sqrt(vareij[j][j][(int)age]));
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fprintf(ficrest," %7.2f (%7.2f)", epj[j],sqrt(vareij[j][j][(int)age]));
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}
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}
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fprintf(ficrest,"\n");
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fprintf(ficrest,"\n");
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}
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}
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Line 3323 while((c=getc(ficpar))=='#' && c!= EOF){
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Line 3321 while((c=getc(ficpar))=='#' && c!= EOF){
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free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel);
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free_ma3x(param,1,nlstate,1, nlstate+ndeath-1,1,ncovmodel);
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if(erreur >0)
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if(erreur >0)
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printf("End of Imach with error %d\n",erreur);
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printf("End of Imach with error or warning %d\n",erreur);
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else printf("End of Imach\n");
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else printf("End of Imach\n");
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/* gettimeofday(&end_time, (struct timezone*)0);*/ /* after time */
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/* gettimeofday(&end_time, (struct timezone*)0);*/ /* after time */
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