Some cleaning and links added in html output

diff --git a/src/imach.c b/src/imach.c
index cc596d4039e7ae4b836dd0cdaac1452db594ddcb..74a5f6fcbcf99e376f781f72143f30e197229b2f 100644 (file)
--- a/src/imach.c
+++ b/src/imach.c
@@ -1,6 +1,9 @@
 /* $Id$
   $State$
   $Log$
+  Revision 1.105  2006/01/05 20:23:19  lievre
+  *** empty log message ***
+
   Revision 1.104  2005/09/30 16:11:43  lievre
   (Module): sump fixed, loop imx fixed, and simplifications.
   (Module): If the status is missing at the last wave but we know
@@ -218,6 +221,7 @@
 #include <math.h>
 #include <stdio.h>
 #include <stdlib.h>
+#include <string.h>
 #include <unistd.h>
 
 /* #include <sys/time.h> */
@@ -259,7 +263,7 @@
 /* $Id$ */
 /* $State$ */
 
-char version[]="Imach version 0.98, September 2005, INED-EUROREVES ";
+char version[]="Imach version 0.98a, January 2006, INED-EUROREVES ";
 char fullversion[]="$Revision$ $Date$"; 
 int erreur, nberr=0, nbwarn=0; /* Error number, number of errors number of warnings  */
 int nvar;
@@ -2553,7 +2557,7 @@ void varevsij(char optionfilefiname[], double ***vareij, double **matcov, double
   }  
   fprintf(ficresprobmorprev,"\n");
   fprintf(ficgp,"\n# Routine varevsij");
- fprintf(fichtm, "#Local time at start: %s", strstart);
+  /* fprintf(fichtm, "#Local time at start: %s", strstart);*/
   fprintf(fichtm,"\n<li><h4> Computing probabilities of dying over estepm months as a weighted average (i.e global mortality independent of initial healh state)</h4></li>\n");
   fprintf(fichtm,"\n<br>%s  <br>\n",digitp);
 /*   } */
@@ -3196,7 +3200,10 @@ void printinghtml(char fileres[], char title[], char datafile[], int firstpass,
                  double jprev2, double mprev2,double anprev2){
   int jj1, k1, i1, cpt;
 
-   fprintf(fichtm,"<ul><li><h4>Result files (first order: no variance)</h4>\n \
+   fprintf(fichtm,"<ul><li><a> href="#firstorder">Result files (first order: no variance)</a>\n \
+   <li><a> href="#secondorder">Result files (second order (variance)</a>\n \
+</ul>");
+   fprintf(fichtm,"<ul><li><h4><a name="firstorder">Result files (first order: no variance)</a></h4>\n \
  - Observed prevalence in each state (during the period defined between %.lf/%.lf/%.lf and %.lf/%.lf/%.lf): <a href=\"%s\">%s</a> <br>\n ",
           jprev1, mprev1,anprev1,jprev2, mprev2,anprev2,subdirf2(fileres,"p"),subdirf2(fileres,"p"));
    fprintf(fichtm,"\
@@ -3247,7 +3254,7 @@ fprintf(fichtm," \n<ul><li><b>Graphs</b></li><p>");
 
 
  fprintf(fichtm,"\
-\n<br><li><h4> Result files (second order: variances)</h4>\n\
+\n<br><li><h4> <a name="secondorder">Result files (second order: variances)</a></h4>\n\
  - Parameter file with estimated parameters and covariance matrix: <a href=\"%s\">%s</a> <br>\n", rfileres,rfileres);
 
  fprintf(fichtm," - Variance of one-step probabilities: <a href=\"%s\">%s</a> <br>\n",
@@ -4006,7 +4013,7 @@ void printinghtmlmort(char fileres[], char title[], char datafile[], int firstpa
 
 fprintf(fichtm,"<ul><li><h4>Life table</h4>\n <br>");
 
- fprintf(fichtm,"\nAge   lx     qx    dx    Lx     Tx     e(x)<br>");
+ fprintf(fichtm,"\nAge   l<inf>x</inf>     q<inf>x</inf> d(x,x+1)    L<inf>x</inf>     T<inf>x</inf>     e<infx</inf><br>");
 
  for (k=agegomp;k<(agemortsup-2);k++) 
    fprintf(fichtm,"%d %.0lf %lf %.0lf %.0lf %.0lf %lf<br>\n",k,lsurv[k],p[1]*exp(p[2]*(k-agegomp)),(p[1]*exp(p[2]*(k-agegomp)))*lsurv[k],lpop[k],tpop[k],tpop[k]/lsurv[k]);
@@ -4501,12 +4508,12 @@ int main(int argc, char *argv[])
      if (s[4][i]==9)  s[4][i]=-1; 
      printf("%ld %.lf %.lf %.lf %.lf/%.lf %.lf/%.lf %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d %.lf/%.lf %d\n",num[i],(covar[1][i]), (covar[2][i]), (weight[i]), (moisnais[i]), (annais[i]), (moisdc[i]), (andc[i]), (mint[1][i]), (anint[1][i]), (s[1][i]),  (mint[2][i]), (anint[2][i]), (s[2][i]),  (mint[3][i]), (anint[3][i]), (s[3][i]),  (mint[4][i]), (anint[4][i]), (s[4][i]));}*/
   
- for (i=1; i<=imx; i++)
+  /* for (i=1; i<=imx; i++) */
  
    /*if ((s[3][i]==3) ||  (s[4][i]==3)) weight[i]=0.08;
      else weight[i]=1;*/
 
-  /* Calculation of the number of parameter from char model*/
+  /* Calculation of the number of parameters from char model */
   Tvar=ivector(1,15); /* stores the number n of the covariates in Vm+Vn at 1 and m at 2 */
   Tprod=ivector(1,15); 
   Tvaraff=ivector(1,15);