/* $Id$
$State$
$Log$
+ Revision 1.93 2003/06/25 16:33:55 brouard
+ (Module): On windows (cygwin) function asctime_r doesn't
+ exist so I changed back to asctime which exists.
+ (Module): Version 0.96b
+
Revision 1.92 2003/06/25 16:30:45 brouard
(Module): On windows (cygwin) function asctime_r doesn't
exist so I changed back to asctime which exists.
int outcmd=0;
char fileres[FILENAMELENGTH], filerespij[FILENAMELENGTH], filereso[FILENAMELENGTH], rfileres[FILENAMELENGTH];
-char lfileres[FILENAMELENGTH];
+
char filelog[FILENAMELENGTH]; /* Log file */
char filerest[FILENAMELENGTH];
char fileregp[FILENAMELENGTH];
free((FREE_ARG)(m+nrl-NR_END));
}
+/*************** function subdirf ***********/
+char *subdirf(char fileres[])
+{
+ /* Caution optionfilefiname is hidden */
+ strcpy(tmpout,optionfilefiname);
+ strcat(tmpout,"/"); /* Add to the right */
+ strcat(tmpout,fileres);
+ return tmpout;
+}
+
+/*************** function subdirf2 ***********/
+char *subdirf2(char fileres[], char *preop)
+{
+
+ /* Caution optionfilefiname is hidden */
+ strcpy(tmpout,optionfilefiname);
+ strcat(tmpout,"/");
+ strcat(tmpout,preop);
+ strcat(tmpout,fileres);
+ return tmpout;
+}
+
+/*************** function subdirf3 ***********/
+char *subdirf3(char fileres[], char *preop, char *preop2)
+{
+
+ /* Caution optionfilefiname is hidden */
+ strcpy(tmpout,optionfilefiname);
+ strcat(tmpout,"/");
+ strcat(tmpout,preop);
+ strcat(tmpout,preop2);
+ strcat(tmpout,fileres);
+ return tmpout;
+}
+
/***************** f1dim *************************/
extern int ncom;
extern double *pcom,*xicom;
oldm=newm;
} /* end mult */
- /*lli=log(out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);*/ /* Original formula */
- /* But now since version 0.9 we anticipate for bias and large stepm.
- * If stepm is larger than one month (smallest stepm) and if the exact delay
- * (in months) between two waves is not a multiple of stepm, we rounded to
- * the nearest (and in case of equal distance, to the lowest) interval but now
- * we keep into memory the bias bh[mi][i] and also the previous matrix product
- * (i.e to dh[mi][i]-1) saved in 'savm'. The we inter(extra)polate the
- * probability in order to take into account the bias as a fraction of the way
- * from savm to out if bh is neagtive or even beyond if bh is positive. bh varies
- * -stepm/2 to stepm/2 .
- * For stepm=1 the results are the same as for previous versions of Imach.
- * For stepm > 1 the results are less biased than in previous versions.
- */
s1=s[mw[mi][i]][i];
s2=s[mw[mi+1][i]][i];
bbh=(double)bh[mi][i]/(double)stepm;
- /* bias is positive if real duration
- * is higher than the multiple of stepm and negative otherwise.
- */
lli= (savm[s1][s2]>(double)1.e-8 ?log((1.+bbh)*out[s1][s2]- bbh*(savm[s1][s2])):log((1.+bbh)*out[s1][s2])); /* linear interpolation */
- /* lli= (savm[s1][s2]>1.e-8 ?(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]):log((1.+bbh)*out[s1][s2]));*/
- /*lli= (savm[s1][s2]>1.e-8 ?(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]):log((1.-+bh)*out[s1][s2])); */ /* exponential interpolation */
- /*lli=(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]);*/
- /*if(lli ==000.0)*/
- /*printf("bbh= %f lli=%f savm=%f out=%f %d\n",bbh,lli,savm[s1][s2], out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]],i); */
ipmx +=1;
sw += weight[i];
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli;
oldm=newm;
} /* end mult */
- /*lli=log(out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]]);*/ /* Original formula */
- /* But now since version 0.9 we anticipate for bias and large stepm.
- * If stepm is larger than one month (smallest stepm) and if the exact delay
- * (in months) between two waves is not a multiple of stepm, we rounded to
- * the nearest (and in case of equal distance, to the lowest) interval but now
- * we keep into memory the bias bh[mi][i] and also the previous matrix product
- * (i.e to dh[mi][i]-1) saved in 'savm'. The we inter(extra)polate the
- * probability in order to take into account the bias as a fraction of the way
- * from savm to out if bh is neagtive or even beyond if bh is positive. bh varies
- * -stepm/2 to stepm/2 .
- * For stepm=1 the results are the same as for previous versions of Imach.
- * For stepm > 1 the results are less biased than in previous versions.
- */
s1=s[mw[mi][i]][i];
s2=s[mw[mi+1][i]][i];
bbh=(double)bh[mi][i]/(double)stepm;
- /* bias is positive if real duration
- * is higher than the multiple of stepm and negative otherwise.
- */
- /* lli= (savm[s1][s2]>(double)1.e-8 ?log((1.+bbh)*out[s1][s2]- bbh*(savm[s1][s2])):log((1.+bbh)*out[s1][s2])); */ /* linear interpolation */
lli= (savm[s1][s2]>1.e-8 ?(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]):log((1.+bbh)*out[s1][s2])); /* exponential inter-extrapolation */
- /*lli=(1.+bbh)*log(out[s1][s2])- bbh*log(savm[s1][s2]);*/
- /*if(lli ==000.0)*/
- /*printf("bbh= %f lli=%f savm=%f out=%f %d\n",bbh,lli,savm[s1][s2], out[s[mw[mi][i]][i]][s[mw[mi+1][i]][i]],i); */
ipmx +=1;
sw += weight[i];
ll[s[mw[mi][i]][i]] += 2*weight[i]*lli;
return -l;
}
-char *subdirf(char fileres[])
-{
- /* Caution optionfilefiname is hidden */
- strcpy(tmpout,optionfilefiname);
- strcat(tmpout,"/"); /* Add to the right */
- strcat(tmpout,fileres);
- return tmpout;
-}
-
-char *subdirf2(char fileres[], char *preop)
-{
-
- strcpy(tmpout,optionfilefiname);
- strcat(tmpout,"/");
- strcat(tmpout,preop);
- strcat(tmpout,fileres);
- return tmpout;
-}
-char *subdirf3(char fileres[], char *preop, char *preop2)
-{
-
- strcpy(tmpout,optionfilefiname);
- strcat(tmpout,"/");
- strcat(tmpout,preop);
- strcat(tmpout,preop2);
- strcat(tmpout,fileres);
- return tmpout;
-}
+/*************** function likelione ***********/
void likelione(FILE *ficres,double p[], int npar, int nlstate, int *globpri, long *ipmx, double *sw, double *fretone, double (*funcone)(double []))
{
/* This routine should help understanding what is done with
fflush(fichier);
return (1);
}
+
+
+/**************** function prwizard **********************/
void prwizard(int ncovmodel, int nlstate, int ndeath, char model[], FILE *ficparo)
{
+ /* Wizard to print covariance matrix template */
+
char ca[32], cb[32], cc[32];
int i,j, k, l, li, lj, lk, ll, jj, npar, itimes;
int numlinepar;
optionfilext=%s\n\
optionfilefiname=%s\n",pathtot,path,optionfile,optionfilext,optionfilefiname);
- printf("Localtime (at start):%s",strstart);
- fprintf(ficlog,"Localtime (at start): %s",strstart);
+ printf("Local time (at start):%s",strstart);
+ fprintf(ficlog,"Local time (at start): %s",strstart);
fflush(ficlog);
/* (void) gettimeofday(&curr_time,&tzp); */
/* printf("Elapsed time %d\n", asc_diff_time(curr_time.tv_sec-start_time.tv_sec,tmpout)); */
strcpy(pathr,path);
strcat(pathr,optionfilefiname);
chdir(optionfilefiname); /* Move to directory named optionfile */
- strcpy(lfileres,fileres);
- strcat(lfileres,"/");
- strcat(lfileres,optionfilefiname);
/* Calculates basic frequencies. Computes observed prevalence at single age
and prints on file fileres'p'. */
tm = *localtime(&end_time.tv_sec);
tmg = *gmtime(&end_time.tv_sec);
strcpy(strtend,asctime(&tm));
- printf("Localtime at start %s\nLocaltime at end %s",strstart, strtend);
- fprintf(ficlog,"Localtime at start %s\nLocal time at end %s\n",strstart, strtend);
+ printf("Local time at start %s\nLocaltime at end %s",strstart, strtend);
+ fprintf(ficlog,"Local time at start %s\nLocal time at end %s\n",strstart, strtend);
printf("Total time used %s\n", asc_diff_time(end_time.tv_sec -start_time.tv_sec,tmpout));
printf("Total time was %d Sec.\n", end_time.tv_sec -start_time.tv_sec);
git://henry.ined.fr / .git / commitdiff