-2022-07-22 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Output of Wald test in the htm file and not only in the log. \r
-\r
-2022-05-30 Brouard Nicolas <brouard@brouard.name>\r
-\r
- * imach.c: With products of covariates (age or dummies or\r
- quantitatives), estimates of parameters were good but when\r
- estimating variances the positions of newly created covariates\r
- were wrongly assigned and results were wrong. Thank to Feinua_Sun!\r
-\r
-2022-05-24 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Some attempts to find a bug of wrong estimates\r
- of confidencce intervals with product in the equation modelC\r
-\r
-2022-05-15 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Some minor improvements\r
-\r
-2022-04-13 Brouard Nicolas <brouard@brouard.name>\r
-\r
- * imach.c (Module): Adding link to text data files\r
-\r
-2022-04-11 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed\r
-\r
-2022-04-05 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c (Module): Fixed covariates (dummy or quantitative)\r
- with missing values have never been allowed but are ERRORS and\r
- program quits. Standard deviations of fixed covariates were\r
- wrongly computed. Mean and standard deviations of time varying\r
- covariates are still not computed.\r
-\r
-2022-03-17 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * 99r25 Improvements in fixing discrepancies between covariates\r
- missing in result line but in model. \r
-\r
-*Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>\r
- * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett\r
-\r
-*2021-03-08 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * ./ (Module): Fixed bug on result:\r
-\r
-*2021-02-20 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Fix bug on quitting after result lines!\r
- (Module): Version 0.99r21\r
-\r
-2021-02-12 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): The use of a Windows BOM (huge) file is now an error\r
-\r
-\r
-2021-02-11 Nicolas Brouard <brouard@ined.fr>\r
-\r
- * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.\r
-\r
-2020-02-22 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * (Module): imach.c Update mle=-3 (for computing Life expectancy\r
- and life table from the data without any state)\r
-\r
-2019-05-20 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * version.h: Summary: version 0.99.r19\r
-\r
- * imach.c: Summary: Projection syntax simplified\r
- We can now start projections, forward or backward, from the mean date\r
- of inteviews up to or down to a number of years of projection:\r
- prevforecast=1 yearsfproj=15.3 mobil_average=0\r
- or\r
- prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0\r
- or\r
- prevbackcast=1 yearsbproj=12.3 mobil_average=1\r
- or\r
- prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1\r
-\r
-2019-05-18 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: doxygen tex bug\r
-\r
-2019-05-16 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: There was some wrong lines added\r
-\r
-2019-05-09 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile, imach.c: *** empty log message ***\r
-\r
- * ChangeLog: Summary: C=\r
-\r
- * imach.c: Summary: Some updates\r
-\r
- * imach.c: Summary: Before ncovmax\r
-\r
- * version.h: *** empty log message ***\r
-\r
- * imach.c: Summary: 0.99r18 unlimited number of individuals\r
- The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.\r
-\r
-2018-12-13 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Bug for young ages (<-30) will be in r17\r
-\r
-2018-12-05 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile: Summary: 0.99r16\r
-\r
-2018-05-02 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Some bugs fixed\r
-\r
-2018-05-02 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Bug for young ages (<-30) will be in r17\r
-\r
-2018-05-02 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Some bugs fixed\r
-\r
-2018-05-01 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: Bug fixed by providing frequencies only for non missing covariates\r
-\r
-2018-04-27 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: some minor bugs\r
-\r
-2018-04-21 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * README.txt: *** empty log message ***\r
-\r
- * imach.c: Summary: Some bugs fixed, valgrind tested\r
-\r
-2018-04-20 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile, README.txt, setup.iss: Summary: imach 0.99r16\r
-\r
- * imach.c:\r
- Summary: Computing mean and stdeviation of fixed quantitative variables\r
-\r
-2018-04-19 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Some minor bugs fixed\r
-\r
- * version.h: *** empty log message ***\r
-\r
-2018-02-27 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
- * imach.c: Summary: Adding second argument for quitting\r
-\r
-2018-02-21 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile, README.txt, imach.c: Summary: 0.99r15\r
- New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c\r
-\r
-2017-07-20 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: temporary working\r
-\r
-2017-07-19 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)\r
-\r
-2017-07-17 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: BOM files can be read now\r
-\r
-2017-06-30 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Graphs improvements\r
-\r
- * imach.c: Summary: Saito's color\r
-\r
-2017-06-29 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Version 0.99r14\r
-\r
-2017-06-27 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: More documentation on projections\r
-\r
- * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)\r
-\r
- * imach.c: Summary: Some bug with rint\r
-\r
-2017-05-24 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2017-05-23 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Code into subroutine, cleanings\r
-\r
-2017-05-18 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: backprojection and confidence intervals of backprevalence\r
-\r
-2017-05-13 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: temporary save for backprojection\r
-\r
- * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)\r
-\r
-2017-04-26 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: imach 0.99r13 Some bugs fixed\r
-\r
- * imach.c: Summary: Labels in graphs\r
-\r
-2017-04-24 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: to save\r
-\r
-2017-04-18 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2017-04-05 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1\r
-\r
-2017-04-04 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Gnuplot indexations fixed (humm)\r
-\r
- * imach.c:\r
- Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3\r
-\r
-2017-04-03 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Version 0.99r12\r
- Some cleanings, conformed with updated documentation.\r
-\r
-2017-03-30 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * version.h: *** empty log message ***\r
-\r
- * version.h: Summary:0.99r11\r
-\r
-2017-03-29 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Temp\r
-\r
-2017-03-27 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Temporary\r
-\r
-2017-03-08 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed\r
-\r
- * imach.c: Summary: Fixing data parameter line\r
-\r
-2016-12-15 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: 0.99 in progress\r
-\r
-2016-09-15 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
- * imach.c: Summary: not working\r
-\r
-2016-09-08 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: continue\r
-\r
-2016-09-07 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Starting values from frequencies\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2016-09-02 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2016-08-30 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Fixing a lots\r
-\r
-2016-08-29 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: gnuplot problem in Back projection to fix\r
-\r
- * imach.c: Summary: Better\r
-\r
-2016-08-26 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: Improvement in Powell output in order to copy and paste\r
-\r
- * imach.c: Summary: Starting tests of 0.99\r
-\r
- * imach.c: Summary: to valgrind\r
-\r
-2016-08-25 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2016-08-23 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
- * imach.c: Summary: not working\r
-\r
-2016-08-22 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: not working\r
-\r
- * imach.c: Summary: Not working\r
-\r
-2016-07-23 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Completing for func too\r
-\r
-2016-07-22 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Fixing some arrays, still debugging\r
-\r
-2016-07-21 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: 0.99 working (more or less) for Asian Workshop on multitate methods\r
-\r
-2016-07-12 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: temp\r
-\r
- * imach.c: Summary: saving but not running\r
-\r
-2016-07-01 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Fixes\r
-\r
-2016-02-19 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7\r
-\r
- * setup.iss, Makefile, version.h: *** empty log message ***\r
-\r
- * imach.c: Summary: temporary\r
-\r
-2016-02-17 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Probably last 0.98 stable version 0.98r6\r
-\r
-2016-02-16 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: minor bug\r
-\r
- * imach.c: Summary: 0.99r2\r
-\r
-2016-02-15 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2016-02-12 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: 0.99 Back projections\r
-\r
-2015-12-23 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Experimental backcast\r
-\r
-2015-12-18 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: 0.98r4 Warning and status=-2\r
-\r
- Version 0.98r4 is now:\r
- - displaying an error when status is -1, date of interview unknown and date of death known;\r
- - permitting a status -2 when the vital status is unknown at a known date of right truncation.\r
- Older changes concerning s=-2, dating from 2005 have been supersed.\r
-\r
- * Makefile: *** empty log message ***\r
-\r
-2015-12-16 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile: *** empty log message ***\r
-\r
- * imach.c: Summary: 0.98r4 working\r
-\r
- * Makefile: Summary: linuxrpm added\r
-\r
- * Makefile: *** empty log message ***\r
-\r
- * imach.c: Summary: temporary not working\r
-\r
-2015-12-11 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: 0.98r4\r
-\r
-2015-12-08 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile: *** empty log message ***\r
-\r
-2015-11-21 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile:\r
- Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more\r
-\r
- * imach.c: Summary: minor typo\r
-\r
- * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional\r
-\r
- Author: Nicolas Brouard\r
-\r
-2015-11-18 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Start working on projected prevalences\r
-\r
-2015-11-17 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Adding ftolpl parameter\r
- Author: N Brouard\r
-\r
- We had difficulties to get smoothed confidence intervals. It was due\r
- to the period prevalence which wasn't computed accurately. The inner\r
- parameter ftolpl is now an outer parameter of the .imach parameter\r
- file after estepm. If ftolpl is small 1.e-4 and estepm too,\r
- computation are long.\r
-\r
- * version.h: *** empty log message ***\r
-\r
- * imach.c: Summary: temporary\r
-\r
-2015-10-27 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile: *** empty log message ***\r
-\r
- * setup.iss.in: Summary: some new subdirs\r
-\r
- * imach.c: *** empty log message ***\r
-\r
- * setup.iss.in:\r
- Summary: Adding gnuplot 5.1 with bin and etc for pango fonts\r
-\r
-2015-10-24 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: *** empty log message ***\r
-\r
-2015-10-23 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: 0.98r3 some clarification for graphs on likelihood contributions\r
-\r
-2015-10-01 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c: Summary: Some new graphs of contribution to likelihood\r
-\r
-2015-09-30 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile:\r
- Summary: Version read from version.h, itself read with cmake\r
-\r
- * imach.c: Summary: looking at better estimation of the hessian\r
-\r
- Also a better criteria for convergence to the period prevalence And\r
- therefore adding the number of years needed to converge. (The\r
- prevalence in any alive state shold sum to one\r
-\r
- * Makefile: *** empty log message ***\r
-\r
-2015-09-22 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * imach.c:\r
- Summary: Adding some overall graph on contribution to likelihood. Might change\r
-\r
-2015-09-15 Brouard Nicolas <brouard@ined.fr>\r
-\r
- * Makefile: *** empty log message ***\r
-\r
- * imach.c: Summary: 0.98r0\r
-\r
- - Some new graphs like survival functions\r
- - Some bugs fixed like model=1+age+V2.\r
-\r
- * ChangeLog, Makefile: Summary: 0.98r0\r
-\r
- * CMakeLists.txt: Summary: Some tests for setup.iss\r
-\r
-2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>\r
-\r
- * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc\r
-\r
-2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>\r
-\r
- * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.\r
-\r
-2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>\r
-\r
- * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)\r
-\r
-2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>\r
-\r
- * imach.c (Module): Merging 1.61 to 1.162\r
-\r
-2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>\r
-\r
- * prevlim.h (Module): \r
-\r
-2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>\r
-\r
- * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...\r
- (Module): Version 0.98nR Running ok, but output format still only works for three covariates.\r
-\r
-2010-04-29 brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Checking covariates for more complex models\r
- than V1+V2. A lot of change to be done. Unstable.\r
-\r
-2010-04-26 brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): merging some libgsl code. Fixing computation\r
- of likelione (using inter/intrapolation if mle = 0) in order to\r
- get same likelihood as if mle=1.\r
- Some cleaning of code and comments added.\r
-\r
-2009-10-29 brouard <brouard@ined.fr>\r
-\r
- * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.\r
-\r
-2006-06-30 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Clarifications on computing e.j\r
-\r
-2006-04-28 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Yes the sum of survivors was wrong since\r
- imach-114 because nhstepm was no more computed in the age\r
- loop. Now we define nhstepma in the age loop.\r
- (Module): In order to speed up (in case of numerous covariates) we\r
- compute health expectancies (without variances) in a first step\r
- and then all the health expectancies with variances or standard\r
- deviation (needs data from the Hessian matrices) which slows the\r
- computation.\r
- In the future we should be able to stop the program is only health\r
- expectancies and graph are needed without standard deviations.\r
-\r
-2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>\r
-\r
- * imach.iss (Module): \r
-\r
- * imach.c (Module): bugs in evsi + population file added in htm output file\r
-\r
-2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>\r
-\r
- * imach.c (Module): \r
-\r
-2006-03-20 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): <title> changed, corresponds to .htm file\r
- name. <head> headers where missing.\r
-\r
- * Makefile (Module): 0.98g\r
-\r
- * imach.c (Module): Weights can have a decimal point as for\r
- English (a comma might work with a correct LC_NUMERIC environment,\r
- otherwise the weight is truncated).\r
- Modification of warning when the covariates values are not 0 or\r
- 1. \r
- Version 0.98g\r
-\r
-2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>\r
-\r
- * imach.c (Module): Comments concerning covariates added\r
-\r
- * noreg-setup.iss (Module): Version 0.98f\r
-\r
- * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup\r
-\r
- * imach.c (Module): refinements in the computation of lli if\r
- status=-2 in order to have more reliable computation if stepm is\r
- not 1 month. Version 0.98f\r
-\r
-2006-03-15 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Bug if status = -2, the loglikelihood was\r
- computed as likelihood omitting the logarithm. Version O.98e\r
-\r
-2006-03-14 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): varevsij Comments added explaining the second\r
- table of variances if popbased=1 .\r
- (Module): Covariances of eij, ekl added, graphs fixed, new html link.\r
- (Module): Function pstamp added\r
- (Module): Version 0.98d \r
-\r
-2006-03-06 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Variance-covariance wrong links and\r
- varian-covariance of ej. is needed (Saito).\r
-\r
-2006-02-27 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): One freematrix added in mlikeli!\r
-\r
-2006-02-26 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Some improvements in processing parameter\r
- filename with strsep.\r
-\r
-2006-02-24 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Memory leaks checks with valgrind and:\r
- datafile was not closed, some imatrix were not freed and on matrix\r
- allocation too.\r
-\r
-2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>\r
-\r
- * strsep.c (Module): Inclusion because not in mingw32!!!\r
-\r
- * setup.iss.in (Module): IMACHSETUPVERSION added\r
-\r
- * noreg-setup.iss (Module): added to cvs tree\r
-\r
- * Makefile (Module): IMACHSETUPVERSION added\r
-\r
-2006-01-30 BROUARD Nicolas <brouard@localhost>\r
-\r
- * Makefile (Module, Module): Latest Makefile\r
-\r
- * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe\r
-\r
-2006-01-27 BROUARD Nicolas <brouard@localhost>\r
-\r
- * noreg-setup.iss (Module): ADDED\r
-\r
-2006-01-24 BROUARD Nicolas <brouard@localhost>\r
-\r
- * imach.c (Module): Comments (lines starting with a #) are allowed in data.\r
-\r
-2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>\r
-\r
- * Makefile (Module): Added Imach98.pmsp and howto crete a dmg\r
-\r
- * createdmg.sh (Module): Creates a dmg disk for MaC OS/X\r
-\r
-2005-09-30 <lievre@PC_00595>\r
-\r
- * imach.c (Module): sump fixed, loop imx fixed, and simplifications.\r
- (Module): If the status is missing at the last wave but we know\r
- that the person is alive, then we can code his/her status as -2\r
- (instead of missing=-1 in earlier versions) and his/her\r
- contributions to the likelihood is 1 - Prob of dying from last\r
- health status (= 1-p13= p11+p12 in the easiest case of somebody in\r
- the healthy state at last known wave). Version is 0.98 \r
-\r
-2004-05-20 Brouard Nicolas <brouard@localhost>\r
-\r
- * imach.c (Repository): \r
- Agnes added a direct estimation of mortality (without the need of\r
- computing period prevalence and differential mortality). Thus here\r
- is version 0.97a which has been distributed to some people at\r
- REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of\r
- mortality using covariates is not done today. Estimating direct\r
- mortality is a very different process because it doesn't need\r
- interpolation because it is easy to get the lx from the force of\r
- the mortality mux in the simplest case as for a Gompertz (log mux\r
- = a + b*x . But we have been able to incorporate the new code\r
- within former imach program (0.96d) without deteriorating too much\r
- the understanding of the program. \r
-\r
-2003-06-25 <brouard@BROUARD>\r
-\r
- * imach.c (Module): On windows (cygwin) function asctime_r doesn't\r
- exist so I changed back to asctime which exists.\r
- (Module): Version 0.96b\r
-\r
-2003-06-24 <brouard@BROUARD>\r
-\r
- * imach.c (Module): Some bugs corrected for windows. Also, when\r
- mle=-1 a template is output in file "or"mypar.txt with the design\r
- of the covariance matrix to be input.\r
-\r
-2003-06-25 Brouard Nicolas <brouard@homebrou>\r
-\r
- * imach.c (Repository): Duplicated warning errors corrected.\r
- (Repository): Elapsed time after each iteration is now output. It\r
- helps to forecast when convergence will be reached. Elapsed time\r
- is stamped in powell. We created a new html file for the graphs\r
- concerning matrix of covariance. It has extension -cov.htm.\r
-\r
-2003-06-23 Brouard Nicolas <brouard@homebrou>\r
-\r
- * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.\r
-\r
-2003-06-18 Brouard Nicolas <brouard@homebrou>\r
-\r
- * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96\r
-\r
-2003-06-17 Brouard Nicolas <brouard@homebrou>\r
-\r
-\r
- * imach.c (Repository): Check when date of death was earlier that\r
- current date of interview. It may happen when the death was just\r
- prior to the death. In this case, dh was negative and likelihood\r
- was wrong (infinity). We still send an "Error" but patch by\r
- assuming that the date of death was just one stepm after the\r
- interview.\r
- (Repository): Because some people have very long ID (first column)\r
- we changed int to long in num[] and we added a new lvector for\r
- memory allocation. But we also truncated to 8 characters (left\r
- truncation)\r
-\r
- (Repository): No more line truncation errors.\r
-\r
-2003-06-14 Brouard Nicolas <brouard@homebrou>\r
-\r
- * imach.c (Repository): Add of a routine likelione (likelihood\r
- only once) which prints on a text file\r
- (ilk) the contributions to the likelihood for each\r
- individual/wave.\r
-\r
-2003-06-13 Brouard Nicolas <brouard@homebrou>\r
- * imach.c (Repository): Replace "freqsummary" at a correct\r
- place. It differs from routine "prevalence" which may be called\r
- many times. Probs is memory consuming and must be used with\r
- parcimony.\r
-\r
-2003-06-17 <brouard@BROUARD>\r
-\r
- * timeval.h (Module): Added included file to make use of\r
- gettimeofday working on win32 with cygwin.\r
-\r
-2003-05-16 Brouard Nicolas <brouard@brouard>\r
- * imach.c (Module): Insert of a warning if the delay between two\r
- waves is negative.\r
-\r
- * imach.c (Module): \r
-\r
-2003-05-03 <brouard@BROUARD>\r
-\r
- * imach.c: Some cleaning\r
-\r
-2003-03-28 <brouard@BROUARD>\r
- * imach.c (Module): In version up to 0.92 likelihood was computed\r
- as if date of death was unknown. Death was treated as any other\r
- health state: the date of the interview describes the actual state\r
- and not the date of a change in health state. The former idea was\r
- to consider that at each interview the state was recorded\r
- (healthy, disable or death) and IMaCh was corrected; but when we\r
- introduced the exact date of death then we should have modified\r
- the contribution of an exact death to the likelihood. This new\r
- contribution is smaller and very dependent of the step unit\r
- stepm. It is no more the probability to die between last interview\r
- and month of death but the probability to survive from last\r
- interview up to one month before death multiplied by the\r
- probability to die within a month. Thanks to Chris\r
- Jackson for correcting this bug. Former versions increased\r
- mortality artificially. The bad side is that we add another loop\r
- which slows down the processing. The difference can be up to 10%\r
- lower mortality.\r
-\r
-2002-05-30 <brouard@BROUARD>\r
- * \r
- * imach.c (Module): Add correlation matrix of one-step\r
- probabilities and covariance matrix\r
-\r
-\r
-\r
-\r
-\r
+2022-07-23 Nicolas Brouard <brouard@ined.fr>
+
+ * r29 W and not sqrt(Wald)
+
+2022-07-22 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): Output of Wald test in the htm file and not only in the log.
+
+2022-05-30 Brouard Nicolas <brouard@brouard.name>
+
+ * imach.c: With products of covariates (age or dummies or
+ quantitatives), estimates of parameters were good but when
+ estimating variances the positions of newly created covariates
+ were wrongly assigned and results were wrong. Thank to Feinua_Sun!
+
+2022-05-24 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): Some attempts to find a bug of wrong estimates
+ of confidencce intervals with product in the equation modelC
+
+2022-05-15 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): Some minor improvements
+
+2022-04-13 Brouard Nicolas <brouard@brouard.name>
+
+ * imach.c (Module): Adding link to text data files
+
+2022-04-11 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): Error in rewriting the 'r' file with yearsfproj or yearsbproj fixed
+
+2022-04-05 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c (Module): Fixed covariates (dummy or quantitative)
+ with missing values have never been allowed but are ERRORS and
+ program quits. Standard deviations of fixed covariates were
+ wrongly computed. Mean and standard deviations of time varying
+ covariates are still not computed.
+
+2022-03-17 Brouard Nicolas <brouard@ined.fr>
+
+ * 99r25 Improvements in fixing discrepancies between covariates
+ missing in result line but in model.
+
+*Wed Mar 31 2021 Nicolas Brouard <brouard@ined.fr>
+ * imach.c (Module): Still bugs in the result loop. Thank to Holly Benett
+
+*2021-03-08 Nicolas Brouard <brouard@ined.fr>
+
+ * ./ (Module): Fixed bug on result:
+
+*2021-02-20 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): Fix bug on quitting after result lines!
+ (Module): Version 0.99r21
+
+2021-02-12 Nicolas Brouard <brouard@ined.fr>
+
+ * imach.c (Module): The use of a Windows BOM (huge) file is now an error
+
+
+2021-02-11 Nicolas Brouard <brouard@ined.fr>
+
+ * (Module): imach.c Someone entered 'results:' instead of 'result:'. Now it is an error which is printed.
+
+2020-02-22 Brouard Nicolas <brouard@ined.fr>
+
+ * (Module): imach.c Update mle=-3 (for computing Life expectancy
+ and life table from the data without any state)
+
+2019-05-20 Brouard Nicolas <brouard@ined.fr>
+
+ * version.h: Summary: version 0.99.r19
+
+ * imach.c: Summary: Projection syntax simplified
+ We can now start projections, forward or backward, from the mean date
+ of inteviews up to or down to a number of years of projection:
+ prevforecast=1 yearsfproj=15.3 mobil_average=0
+ or
+ prevforecast=1 starting-proj-date=1/1/2007 final-proj-date=12/31/2017 mobil_average=0
+ or
+ prevbackcast=1 yearsbproj=12.3 mobil_average=1
+ or
+ prevbackcast=1 starting-back-date=1/10/1999 final-back-date=1/1/1985 mobil_average=1
+
+2019-05-18 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: doxygen tex bug
+
+2019-05-16 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: There was some wrong lines added
+
+2019-05-09 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile, imach.c: *** empty log message ***
+
+ * ChangeLog: Summary: C=
+
+ * imach.c: Summary: Some updates
+
+ * imach.c: Summary: Before ncovmax
+
+ * version.h: *** empty log message ***
+
+ * imach.c: Summary: 0.99r18 unlimited number of individuals
+ The number n which was limited to 20,000 cases is now unlimited, from firstobs to lastobs. If the number is too for the virtual memory, probably an error will occur.
+
+2018-12-13 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Bug for young ages (<-30) will be in r17
+
+2018-12-05 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile: Summary: 0.99r16
+
+2018-05-02 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Some bugs fixed
+
+2018-05-02 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Bug for young ages (<-30) will be in r17
+
+2018-05-02 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Some bugs fixed
+
+2018-05-01 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: Bug fixed by providing frequencies only for non missing covariates
+
+2018-04-27 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: some minor bugs
+
+2018-04-21 Brouard Nicolas <brouard@ined.fr>
+
+ * README.txt: *** empty log message ***
+
+ * imach.c: Summary: Some bugs fixed, valgrind tested
+
+2018-04-20 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile, README.txt, setup.iss: Summary: imach 0.99r16
+
+ * imach.c:
+ Summary: Computing mean and stdeviation of fixed quantitative variables
+
+2018-04-19 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Some minor bugs fixed
+
+ * version.h: *** empty log message ***
+
+2018-02-27 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+ * imach.c: Summary: Adding second argument for quitting
+
+2018-02-21 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile, README.txt, imach.c: Summary: 0.99r15
+ New Makefile with recent VirtualBox 5.26. Bug in sqrt negatve in imach.c
+
+2017-07-20 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: temporary working
+
+2017-07-19 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Bug for mobil_average=0 and prevforecast fixed(?)
+
+2017-07-17 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: BOM files can be read now
+
+2017-06-30 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Graphs improvements
+
+ * imach.c: Summary: Saito's color
+
+2017-06-29 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Version 0.99r14
+
+2017-06-27 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: More documentation on projections
+
+ * imach.c: Summary: Color of backprojection changed from 6 to 5(yellow)
+
+ * imach.c: Summary: Some bug with rint
+
+2017-05-24 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2017-05-23 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Code into subroutine, cleanings
+
+2017-05-18 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: backprojection and confidence intervals of backprevalence
+
+2017-05-13 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: temporary save for backprojection
+
+ * imach.c: Summary: Version 0.99r13 (improvements and bugs fixed)
+
+2017-04-26 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: imach 0.99r13 Some bugs fixed
+
+ * imach.c: Summary: Labels in graphs
+
+2017-04-24 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: to save
+
+2017-04-18 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2017-04-05 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Bug in E_ as well as in T_ fixed nres-1 vs k1-1
+
+2017-04-04 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Gnuplot indexations fixed (humm)
+
+ * imach.c:
+ Summary: Some errors to warnings only if date of death is unknown but status is death we could set to pi3
+
+2017-04-03 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Version 0.99r12
+ Some cleanings, conformed with updated documentation.
+
+2017-03-30 Brouard Nicolas <brouard@ined.fr>
+
+ * version.h: *** empty log message ***
+
+ * version.h: Summary:0.99r11
+
+2017-03-29 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Temp
+
+2017-03-27 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Temporary
+
+2017-03-08 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: IMaCh version 0.99r10 bugs in gnuplot fixed
+
+ * imach.c: Summary: Fixing data parameter line
+
+2016-12-15 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: 0.99 in progress
+
+2016-09-15 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+ * imach.c: Summary: not working
+
+2016-09-08 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: continue
+
+2016-09-07 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Starting values from frequencies
+
+ * imach.c: *** empty log message ***
+
+2016-09-02 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2016-08-30 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Fixing a lots
+
+2016-08-29 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: gnuplot problem in Back projection to fix
+
+ * imach.c: Summary: Better
+
+2016-08-26 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: Improvement in Powell output in order to copy and paste
+
+ * imach.c: Summary: Starting tests of 0.99
+
+ * imach.c: Summary: to valgrind
+
+2016-08-25 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2016-08-23 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+ * imach.c: Summary: not working
+
+2016-08-22 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: not working
+
+ * imach.c: Summary: Not working
+
+2016-07-23 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Completing for func too
+
+2016-07-22 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Fixing some arrays, still debugging
+
+2016-07-21 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: 0.99 working (more or less) for Asian Workshop on multitate methods
+
+2016-07-12 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: temp
+
+ * imach.c: Summary: saving but not running
+
+2016-07-01 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Fixes
+
+2016-02-19 Brouard Nicolas <brouard@ined.fr>
+
+ * imach-0.98r.c: Summary: Kind of 0.98r? series, starting with r7
+
+ * setup.iss, Makefile, version.h: *** empty log message ***
+
+ * imach.c: Summary: temporary
+
+2016-02-17 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Probably last 0.98 stable version 0.98r6
+
+2016-02-16 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: minor bug
+
+ * imach.c: Summary: 0.99r2
+
+2016-02-15 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2016-02-12 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: 0.99 Back projections
+
+2015-12-23 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Experimental backcast
+
+2015-12-18 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: 0.98r4 Warning and status=-2
+
+ Version 0.98r4 is now:
+ - displaying an error when status is -1, date of interview unknown and date of death known;
+ - permitting a status -2 when the vital status is unknown at a known date of right truncation.
+ Older changes concerning s=-2, dating from 2005 have been supersed.
+
+ * Makefile: *** empty log message ***
+
+2015-12-16 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile: *** empty log message ***
+
+ * imach.c: Summary: 0.98r4 working
+
+ * Makefile: Summary: linuxrpm added
+
+ * Makefile: *** empty log message ***
+
+ * imach.c: Summary: temporary not working
+
+2015-12-11 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: 0.98r4
+
+2015-12-08 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile: *** empty log message ***
+
+2015-11-21 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile:
+ Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more
+
+ * imach.c: Summary: minor typo
+
+ * imach.c: Summary: 0.98r3 with some graph of projected cross-sectional
+
+ Author: Nicolas Brouard
+
+2015-11-18 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Start working on projected prevalences
+
+2015-11-17 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Adding ftolpl parameter
+ Author: N Brouard
+
+ We had difficulties to get smoothed confidence intervals. It was due
+ to the period prevalence which wasn't computed accurately. The inner
+ parameter ftolpl is now an outer parameter of the .imach parameter
+ file after estepm. If ftolpl is small 1.e-4 and estepm too,
+ computation are long.
+
+ * version.h: *** empty log message ***
+
+ * imach.c: Summary: temporary
+
+2015-10-27 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile: *** empty log message ***
+
+ * setup.iss.in: Summary: some new subdirs
+
+ * imach.c: *** empty log message ***
+
+ * setup.iss.in:
+ Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
+
+2015-10-24 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: *** empty log message ***
+
+2015-10-23 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: 0.98r3 some clarification for graphs on likelihood contributions
+
+2015-10-01 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c: Summary: Some new graphs of contribution to likelihood
+
+2015-09-30 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile:
+ Summary: Version read from version.h, itself read with cmake
+
+ * imach.c: Summary: looking at better estimation of the hessian
+
+ Also a better criteria for convergence to the period prevalence And
+ therefore adding the number of years needed to converge. (The
+ prevalence in any alive state shold sum to one
+
+ * Makefile: *** empty log message ***
+
+2015-09-22 Brouard Nicolas <brouard@ined.fr>
+
+ * imach.c:
+ Summary: Adding some overall graph on contribution to likelihood. Might change
+
+2015-09-15 Brouard Nicolas <brouard@ined.fr>
+
+ * Makefile: *** empty log message ***
+
+ * imach.c: Summary: 0.98r0
+
+ - Some new graphs like survival functions
+ - Some bugs fixed like model=1+age+V2.
+
+ * ChangeLog, Makefile: Summary: 0.98r0
+
+ * CMakeLists.txt: Summary: Some tests for setup.iss
+
+2015-09-15 Nicolas J Brouard <nbrouard@tugault.ined.fr>
+
+ * (Module): 0.98r0 Some new graphs, some bugs fixed: model=1+age+V2. etc
+
+2015-08-18 Nicolas J Brouard <nbrouard@tugault.local>
+
+ * (Module): Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
+
+2015-08-03 Nicolas J Brouard <nbrouard@tugault.ined.fr>
+
+ * (Module): Changing Variance of one-step probabilities into Standard deviation (thanks to Yao-Chi Shih)
+
+2014-12-16 Nicolas J Brouard <nbrouard@tugault.local>
+
+ * imach.c (Module): Merging 1.61 to 1.162
+
+2014-09-02 Nicolas J Brouard <nbrouard@njbrouard.ined.fr>
+
+ * prevlim.h (Module):
+
+2014-01-26 Nicolas J Brouard <nbrouard@ledermann-2.local>
+
+ * imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
+ (Module): Version 0.98nR Running ok, but output format still only works for three covariates.
+
+2010-04-29 brouard <brouard@ined.fr>
+
+ * imach.c (Module): Checking covariates for more complex models
+ than V1+V2. A lot of change to be done. Unstable.
+
+2010-04-26 brouard <brouard@ined.fr>
+
+ * imach.c (Module): merging some libgsl code. Fixing computation
+ of likelione (using inter/intrapolation if mle = 0) in order to
+ get same likelihood as if mle=1.
+ Some cleaning of code and comments added.
+
+2009-10-29 brouard <brouard@ined.fr>
+
+ * imach.c (Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
+
+2006-06-30 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Clarifications on computing e.j
+
+2006-04-28 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Yes the sum of survivors was wrong since
+ imach-114 because nhstepm was no more computed in the age
+ loop. Now we define nhstepma in the age loop.
+ (Module): In order to speed up (in case of numerous covariates) we
+ compute health expectancies (without variances) in a first step
+ and then all the health expectancies with variances or standard
+ deviation (needs data from the Hessian matrices) which slows the
+ computation.
+ In the future we should be able to stop the program is only health
+ expectancies and graph are needed without standard deviations.
+
+2006-04-04 LIEVRE Agnes <lievre@PC_00697.ined.fr>
+
+ * imach.iss (Module):
+
+ * imach.c (Module): bugs in evsi + population file added in htm output file
+
+2006-03-22 LIEVRE Agnes <lievre@PC_00697.ined.fr>
+
+ * imach.c (Module):
+
+2006-03-20 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): <title> changed, corresponds to .htm file
+ name. <head> headers where missing.
+
+ * Makefile (Module): 0.98g
+
+ * imach.c (Module): Weights can have a decimal point as for
+ English (a comma might work with a correct LC_NUMERIC environment,
+ otherwise the weight is truncated).
+ Modification of warning when the covariates values are not 0 or
+ 1.
+ Version 0.98g
+
+2006-03-16 LIEVRE Agnes <lievre@PC_00697.ined.fr>
+
+ * imach.c (Module): Comments concerning covariates added
+
+ * noreg-setup.iss (Module): Version 0.98f
+
+ * Makefile (Module): Version 0.98f make _windows=1 imachcyg-setup
+
+ * imach.c (Module): refinements in the computation of lli if
+ status=-2 in order to have more reliable computation if stepm is
+ not 1 month. Version 0.98f
+
+2006-03-15 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Bug if status = -2, the loglikelihood was
+ computed as likelihood omitting the logarithm. Version O.98e
+
+2006-03-14 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): varevsij Comments added explaining the second
+ table of variances if popbased=1 .
+ (Module): Covariances of eij, ekl added, graphs fixed, new html link.
+ (Module): Function pstamp added
+ (Module): Version 0.98d
+
+2006-03-06 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Variance-covariance wrong links and
+ varian-covariance of ej. is needed (Saito).
+
+2006-02-27 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): One freematrix added in mlikeli!
+
+2006-02-26 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Some improvements in processing parameter
+ filename with strsep.
+
+2006-02-24 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Module): Memory leaks checks with valgrind and:
+ datafile was not closed, some imatrix were not freed and on matrix
+ allocation too.
+
+2006-02-09 LIEVRE Agnes <lievre@PC_00697.ined.fr>
+
+ * strsep.c (Module): Inclusion because not in mingw32!!!
+
+ * setup.iss.in (Module): IMACHSETUPVERSION added
+
+ * noreg-setup.iss (Module): added to cvs tree
+
+ * Makefile (Module): IMACHSETUPVERSION added
+
+2006-01-30 BROUARD Nicolas <brouard@localhost>
+
+ * Makefile (Module, Module): Latest Makefile
+
+ * imach.c (Module): Back to gnuplot.exe instead of wgnuplot.exe
+
+2006-01-27 BROUARD Nicolas <brouard@localhost>
+
+ * noreg-setup.iss (Module): ADDED
+
+2006-01-24 BROUARD Nicolas <brouard@localhost>
+
+ * imach.c (Module): Comments (lines starting with a #) are allowed in data.
+
+2005-10-25 Nicolas Brouard <brouard@dhcp171.recherche.ined.fr>
+
+ * Makefile (Module): Added Imach98.pmsp and howto crete a dmg
+
+ * createdmg.sh (Module): Creates a dmg disk for MaC OS/X
+
+2005-09-30 <lievre@PC_00595>
+
+ * imach.c (Module): sump fixed, loop imx fixed, and simplifications.
+ (Module): If the status is missing at the last wave but we know
+ that the person is alive, then we can code his/her status as -2
+ (instead of missing=-1 in earlier versions) and his/her
+ contributions to the likelihood is 1 - Prob of dying from last
+ health status (= 1-p13= p11+p12 in the easiest case of somebody in
+ the healthy state at last known wave). Version is 0.98
+
+2004-05-20 Brouard Nicolas <brouard@localhost>
+
+ * imach.c (Repository):
+ Agnes added a direct estimation of mortality (without the need of
+ computing period prevalence and differential mortality). Thus here
+ is version 0.97a which has been distributed to some people at
+ REVES 16 in Brugge using an Inno setup.exe for PCs. Estimates of
+ mortality using covariates is not done today. Estimating direct
+ mortality is a very different process because it doesn't need
+ interpolation because it is easy to get the lx from the force of
+ the mortality mux in the simplest case as for a Gompertz (log mux
+ = a + b*x . But we have been able to incorporate the new code
+ within former imach program (0.96d) without deteriorating too much
+ the understanding of the program.
+
+2003-06-25 <brouard@BROUARD>
+
+ * imach.c (Module): On windows (cygwin) function asctime_r doesn't
+ exist so I changed back to asctime which exists.
+ (Module): Version 0.96b
+
+2003-06-24 <brouard@BROUARD>
+
+ * imach.c (Module): Some bugs corrected for windows. Also, when
+ mle=-1 a template is output in file "or"mypar.txt with the design
+ of the covariance matrix to be input.
+
+2003-06-25 Brouard Nicolas <brouard@homebrou>
+
+ * imach.c (Repository): Duplicated warning errors corrected.
+ (Repository): Elapsed time after each iteration is now output. It
+ helps to forecast when convergence will be reached. Elapsed time
+ is stamped in powell. We created a new html file for the graphs
+ concerning matrix of covariance. It has extension -cov.htm.
+
+2003-06-23 Brouard Nicolas <brouard@homebrou>
+
+ * imach.c (Repository): Create a sub-directory where all the secondary files are. Only imach, htm, gp and r(imach) are on the main directory. Correct time and other things.
+
+2003-06-18 Brouard Nicolas <brouard@homebrou>
+
+ * imach.c (Repository): Suppress abusive calls to append to file html (solution was to put fichtm as a global variable. Version 0.96
+
+2003-06-17 Brouard Nicolas <brouard@homebrou>
+
+
+ * imach.c (Repository): Check when date of death was earlier that
+ current date of interview. It may happen when the death was just
+ prior to the death. In this case, dh was negative and likelihood
+ was wrong (infinity). We still send an "Error" but patch by
+ assuming that the date of death was just one stepm after the
+ interview.
+ (Repository): Because some people have very long ID (first column)
+ we changed int to long in num[] and we added a new lvector for
+ memory allocation. But we also truncated to 8 characters (left
+ truncation)
+
+ (Repository): No more line truncation errors.
+
+2003-06-14 Brouard Nicolas <brouard@homebrou>
+
+ * imach.c (Repository): Add of a routine likelione (likelihood
+ only once) which prints on a text file
+ (ilk) the contributions to the likelihood for each
+ individual/wave.
+
+2003-06-13 Brouard Nicolas <brouard@homebrou>
+ * imach.c (Repository): Replace "freqsummary" at a correct
+ place. It differs from routine "prevalence" which may be called
+ many times. Probs is memory consuming and must be used with
+ parcimony.
+
+2003-06-17 <brouard@BROUARD>
+
+ * timeval.h (Module): Added included file to make use of
+ gettimeofday working on win32 with cygwin.
+
+2003-05-16 Brouard Nicolas <brouard@brouard>
+ * imach.c (Module): Insert of a warning if the delay between two
+ waves is negative.
+
+ * imach.c (Module):
+
+2003-05-03 <brouard@BROUARD>
+
+ * imach.c: Some cleaning
+
+2003-03-28 <brouard@BROUARD>
+ * imach.c (Module): In version up to 0.92 likelihood was computed
+ as if date of death was unknown. Death was treated as any other
+ health state: the date of the interview describes the actual state
+ and not the date of a change in health state. The former idea was
+ to consider that at each interview the state was recorded
+ (healthy, disable or death) and IMaCh was corrected; but when we
+ introduced the exact date of death then we should have modified
+ the contribution of an exact death to the likelihood. This new
+ contribution is smaller and very dependent of the step unit
+ stepm. It is no more the probability to die between last interview
+ and month of death but the probability to survive from last
+ interview up to one month before death multiplied by the
+ probability to die within a month. Thanks to Chris
+ Jackson for correcting this bug. Former versions increased
+ mortality artificially. The bad side is that we add another loop
+ which slows down the processing. The difference can be up to 10%
+ lower mortality.
+
+2002-05-30 <brouard@BROUARD>
+ *
+ * imach.c (Module): Add correlation matrix of one-step
+ probabilities and covariance matrix
+
+
+
+
+
git://henry.ined.fr / .git / commitdiff