]> henry.ined.fr Git - .git/log
.git
9 years agoSummary: some new subdirs
N. Brouard [Tue, 27 Oct 2015 19:51:28 +0000 (19:51 +0000)]
Summary: some new subdirs

9 years ago*** empty log message ***
N. Brouard [Tue, 27 Oct 2015 17:36:57 +0000 (17:36 +0000)]
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9 years agoSummary: Adding gnuplot 5.1 with bin and etc for pango fonts
N. Brouard [Tue, 27 Oct 2015 17:36:40 +0000 (17:36 +0000)]
Summary: Adding gnuplot 5.1 with bin and etc for pango fonts

9 years agoSummary: 0.98r3 with new gnuplot 5.1
N. Brouard [Tue, 27 Oct 2015 15:59:13 +0000 (15:59 +0000)]
Summary: 0.98r3 with new gnuplot 5.1

9 years ago*** empty log message ***
N. Brouard [Tue, 27 Oct 2015 15:58:38 +0000 (15:58 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Sat, 24 Oct 2015 07:14:11 +0000 (07:14 +0000)]
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9 years agoSummary: 0.98r3 some clarification for graphs on likelihood contributions
N. Brouard [Fri, 23 Oct 2015 15:50:53 +0000 (15:50 +0000)]
Summary: 0.98r3 some clarification for graphs on likelihood contributions

9 years agoSummary: Some new graphs of contribution to likelihood
N. Brouard [Thu, 1 Oct 2015 16:20:26 +0000 (16:20 +0000)]
Summary: Some new graphs of contribution to likelihood

9 years agoSummary: Version read from version.h, itself read with cmake
N. Brouard [Wed, 30 Sep 2015 18:35:53 +0000 (18:35 +0000)]
Summary: Version read from version.h, itself read with cmake

9 years agoSummary: 0.98r2
N. Brouard [Wed, 30 Sep 2015 17:47:08 +0000 (17:47 +0000)]
Summary: 0.98r2

9 years agoSummary: looking at better estimation of the hessian
N. Brouard [Wed, 30 Sep 2015 17:45:14 +0000 (17:45 +0000)]
Summary: looking at better estimation of the hessian

Also a better criteria for convergence to the period prevalence And
therefore adding the number of years needed to converge. (The
prevalence in any alive state shold sum to one

9 years ago*** empty log message ***
N. Brouard [Wed, 30 Sep 2015 17:43:12 +0000 (17:43 +0000)]
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9 years agoSummary: Adding some overall graph on contribution to likelihood. Might change
N. Brouard [Tue, 22 Sep 2015 19:45:16 +0000 (19:45 +0000)]
Summary: Adding some overall graph on contribution to likelihood. Might change

9 years ago*** empty log message ***
N. Brouard [Thu, 17 Sep 2015 07:14:45 +0000 (07:14 +0000)]
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9 years agoSummary: generate refman.pdf
N. Brouard [Thu, 17 Sep 2015 07:14:08 +0000 (07:14 +0000)]
Summary: generate refman.pdf

9 years ago*** empty log message ***
N. Brouard [Thu, 17 Sep 2015 06:22:14 +0000 (06:22 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Wed, 16 Sep 2015 08:50:20 +0000 (08:50 +0000)]
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9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:57:21 +0000 (17:57 +0000)]
Summary: 0.98r0

9 years ago*** empty log message ***
N. Brouard [Tue, 15 Sep 2015 17:56:37 +0000 (17:56 +0000)]
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9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:34:58 +0000 (17:34 +0000)]
Summary: 0.98r0

- Some new graphs like suvival functions
- Some bugs fixed like model=1+age+V2.

9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:33:54 +0000 (17:33 +0000)]
Summary: 0.98r0

9 years agoSummary: Some tests for setup.iss
N. Brouard [Tue, 15 Sep 2015 17:32:23 +0000 (17:32 +0000)]
Summary: Some tests for setup.iss

9 years ago*** empty log message ***
N. Brouard [Wed, 9 Sep 2015 16:54:10 +0000 (16:54 +0000)]
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9 years agoSummary: Big bug thanks to Flavia
N. Brouard [Wed, 9 Sep 2015 16:53:55 +0000 (16:53 +0000)]
Summary: Big bug thanks to Flavia

Even model=1+age+V2. did not work anymore

9 years agoSummary: 0.98q6 changing default small png format for graph to vectorized svg.
N. Brouard [Mon, 7 Sep 2015 14:09:23 +0000 (14:09 +0000)]
Summary: 0.98q6 changing default small png format for graph to vectorized svg.

9 years ago*** empty log message ***
N. Brouard [Mon, 7 Sep 2015 14:08:13 +0000 (14:08 +0000)]
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N. Brouard [Thu, 3 Sep 2015 07:55:21 +0000 (07:55 +0000)]
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9 years agoSummary: 0.98q5 Flavia
N. Brouard [Thu, 3 Sep 2015 07:14:39 +0000 (07:14 +0000)]
Summary: 0.98q5 Flavia

9 years ago*** empty log message ***
N. Brouard [Thu, 3 Sep 2015 07:14:15 +0000 (07:14 +0000)]
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9 years agoSummary: Too old
N. Brouard [Wed, 2 Sep 2015 12:31:29 +0000 (12:31 +0000)]
Summary: Too old

9 years agoSummary: Some updates
N. Brouard [Wed, 2 Sep 2015 12:30:50 +0000 (12:30 +0000)]
Summary: Some updates

9 years agoSummary: Half way to using cmake on OS/X
N. Brouard [Wed, 2 Sep 2015 11:39:21 +0000 (11:39 +0000)]
Summary: Half way to using cmake on OS/X

9 years ago*** empty log message ***
N. Brouard [Wed, 2 Sep 2015 10:21:23 +0000 (10:21 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 1 Sep 2015 18:24:39 +0000 (18:24 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 23:23:08 +0000 (23:23 +0000)]
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9 years agoSummary: 0.98q5
N. Brouard [Tue, 18 Aug 2015 23:17:52 +0000 (23:17 +0000)]
Summary: 0.98q5

9 years agoSummary: cmake
N. Brouard [Tue, 18 Aug 2015 16:44:58 +0000 (16:44 +0000)]
Summary: cmake

9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 16:43:19 +0000 (16:43 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 16:36:50 +0000 (16:36 +0000)]
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9 years agoSummary: Adding a hack for testing purpose
N. Brouard [Tue, 18 Aug 2015 16:28:39 +0000 (16:28 +0000)]
Summary: Adding a hack for testing purpose

After reading the title, ftol and model lines, if the comment line has
a q, starting with #q, the answer at the end of the run is quit. It
permits to run test files in batch with ctest. The former workaround was
$ echo q | imach foo.imach

9 years agoSummary: Adding error when the covariance matrix doesn't contain the exact number...
N. Brouard [Tue, 18 Aug 2015 13:32:00 +0000 (13:32 +0000)]
Summary:  Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.

9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 13:31:23 +0000 (13:31 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 4 Aug 2015 07:18:34 +0000 (07:18 +0000)]
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9 years agoSummary: 0.98q4
N. Brouard [Tue, 4 Aug 2015 07:17:42 +0000 (07:17 +0000)]
Summary: 0.98q4

9 years ago0.98q4
N. Brouard [Tue, 4 Aug 2015 07:15:27 +0000 (07:15 +0000)]
0.98q4

9 years agoSummary:
N. Brouard [Mon, 3 Aug 2015 18:53:02 +0000 (18:53 +0000)]
Summary:

9 years agoSummary: Fixing some outputs
N. Brouard [Thu, 16 Jul 2015 16:49:02 +0000 (16:49 +0000)]
Summary: Fixing some outputs

9 years agoSummary: Some fixes
N. Brouard [Tue, 14 Jul 2015 10:00:33 +0000 (10:00 +0000)]
Summary: Some fixes

9 years ago*** empty log message ***
N. Brouard [Tue, 5 May 2015 08:54:59 +0000 (08:54 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 5 May 2015 08:52:05 +0000 (08:52 +0000)]
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9 years agoSummary: Adding digits in output parameters (7 digits instead of 6)
N. Brouard [Tue, 5 May 2015 08:51:13 +0000 (08:51 +0000)]
Summary: Adding digits in output parameters (7 digits instead of 6)

Fix 1+age+.

9 years agoSummary: 0.98q2
N. Brouard [Thu, 30 Apr 2015 14:45:16 +0000 (14:45 +0000)]
Summary: 0.98q2

9 years ago*** empty log message ***
N. Brouard [Thu, 30 Apr 2015 08:27:53 +0000 (08:27 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Wed, 29 Apr 2015 09:11:15 +0000 (09:11 +0000)]
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9 years agoSummary:
N. Brouard [Wed, 29 Apr 2015 09:11:01 +0000 (09:11 +0000)]
Summary:
Author:

9 years agoSummary: 0.98q1
N. Brouard [Thu, 23 Apr 2015 12:02:12 +0000 (12:02 +0000)]
Summary: 0.98q1

9 years agoSummary: V1*age is working now, version 0.98q1
N. Brouard [Thu, 23 Apr 2015 12:01:52 +0000 (12:01 +0000)]
Summary: V1*age is working now, version 0.98q1

Some codes had been disabled in order to simplify and Vn*age was
working in the optimization phase, ie, giving correct MLE parameters,
but, as usual, outputs were not correct and program core dumped.

10 years agoSummary: O.98p0 and 0.98q0
N. Brouard [Tue, 31 Mar 2015 11:09:43 +0000 (11:09 +0000)]
Summary: O.98p0 and 0.98q0

10 years agoSummary: March 2015
N. Brouard [Wed, 11 Mar 2015 17:15:46 +0000 (17:15 +0000)]
Summary: March 2015

10 years ago*** empty log message ***
N. Brouard [Wed, 11 Mar 2015 13:43:20 +0000 (13:43 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Wed, 11 Mar 2015 13:28:49 +0000 (13:28 +0000)]
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10 years agoSummary: newer including both binaries 32 and 64 bits in a single installer with...
N. Brouard [Wed, 11 Mar 2015 13:28:31 +0000 (13:28 +0000)]
Summary: newer including both binaries 32 and 64 bits in a single installer with InnoSetup 5.5.5

10 years agoSummary: Inclusion of compile and links command line for Intel Compiler
N. Brouard [Wed, 11 Mar 2015 13:26:42 +0000 (13:26 +0000)]
Summary: Inclusion of compile and links command line for Intel Compiler

10 years agoSummary: Back from Windows 8. Intel Compiler
N. Brouard [Wed, 11 Mar 2015 11:52:39 +0000 (11:52 +0000)]
Summary: Back from Windows 8. Intel Compiler

10 years ago*** empty log message ***
N. Brouard [Tue, 10 Mar 2015 20:35:56 +0000 (20:35 +0000)]
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10 years agoSummary: 0.98q0, trying with directest, mnbrak fixed
N. Brouard [Tue, 10 Mar 2015 20:34:32 +0000 (20:34 +0000)]
Summary: 0.98q0, trying with directest, mnbrak fixed

We use directest instead of original Powell test; probably no
incidence on the results, but better justifications;
We fixed Numerical Recipes mnbrak routine which was wrong and gave
wrong results.

10 years agoSummary: Trying to keep directest which seems simpler and more general
N. Brouard [Thu, 12 Feb 2015 08:19:57 +0000 (08:19 +0000)]
Summary: Trying to keep directest which seems simpler and more general
Author: Nicolas Brouard

10 years agoSummary: Comments on Powell added
N. Brouard [Wed, 11 Feb 2015 23:22:24 +0000 (23:22 +0000)]
Summary: Comments on Powell added

Author:

10 years agoSummary: Finishing move from main to function (hpijx and prevalence_limit)
N. Brouard [Wed, 11 Feb 2015 17:33:45 +0000 (17:33 +0000)]
Summary: Finishing move from main to function (hpijx and prevalence_limit)

10 years agoSummary: update
N. Brouard [Wed, 11 Feb 2015 17:31:05 +0000 (17:31 +0000)]
Summary: update

10 years agoSummary: Back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:25 +0000 (09:57 +0000)]
Summary: Back to OS/X

10 years agoSummary: back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:06 +0000 (09:57 +0000)]
Summary: back to OS/X

10 years ago*** empty log message ***
N. Brouard [Sun, 4 Jan 2015 09:35:48 +0000 (09:35 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 18:41:06 +0000 (18:41 +0000)]
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10 years agoSummary: Still testing ilc32 on OSX
N. Brouard [Sat, 3 Jan 2015 18:40:56 +0000 (18:40 +0000)]
Summary: Still testing ilc32 on OSX

10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 16:45:04 +0000 (16:45 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 16:33:42 +0000 (16:33 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 16:16:07 +0000 (16:16 +0000)]
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10 years agoSummary: Still in cross-compilation
N. Brouard [Sat, 3 Jan 2015 16:15:49 +0000 (16:15 +0000)]
Summary: Still in cross-compilation

10 years agoSummary: trying to detect cross-compilation
N. Brouard [Sat, 3 Jan 2015 12:06:26 +0000 (12:06 +0000)]
Summary: trying to detect cross-compilation

10 years agoSummary: Back from Visual Studio and Intel, options for compiling for Windows XP
N. Brouard [Sat, 27 Dec 2014 12:07:47 +0000 (12:07 +0000)]
Summary: Back from Visual Studio and Intel, options for compiling for Windows XP

10 years agoSummary: Back from Visual C
N. Brouard [Tue, 23 Dec 2014 13:26:59 +0000 (13:26 +0000)]
Summary: Back from Visual C

Still problem with utsname.h on Windows

10 years ago*** empty log message ***
N. Brouard [Tue, 23 Dec 2014 11:17:26 +0000 (11:17 +0000)]
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10 years agoSummary: Cleaning some \%% back to %%
N. Brouard [Tue, 23 Dec 2014 11:17:12 +0000 (11:17 +0000)]
Summary: Cleaning some \%% back to %%

The escape was mandatory for a specific compiler (which one?), but too many warnings.

10 years agoSummary: 0.98p
N. Brouard [Mon, 22 Dec 2014 23:08:31 +0000 (23:08 +0000)]
Summary: 0.98p

Outputs some informations on compiler used, OS etc. Testing on different platforms.

10 years agoSummary: Trying to integrate Intel OSX compiler
N. Brouard [Mon, 22 Dec 2014 23:06:35 +0000 (23:06 +0000)]
Summary: Trying to integrate Intel OSX compiler

10 years agoSummary: udate
N. Brouard [Mon, 22 Dec 2014 15:17:42 +0000 (15:17 +0000)]
Summary: udate

10 years agoSummary: Testing uname and compiler version and if compiled 32 or 64
N. Brouard [Mon, 22 Dec 2014 13:50:56 +0000 (13:50 +0000)]
Summary: Testing uname and compiler version and if compiled 32 or 64

Testing on Linux 64

10 years ago*** empty log message ***
N. Brouard [Mon, 22 Dec 2014 11:40:47 +0000 (11:40 +0000)]
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10 years agoSummary: After compiling on Visual C
N. Brouard [Tue, 16 Dec 2014 11:20:36 +0000 (11:20 +0000)]
Summary: After compiling on Visual C

* imach.c (Module): Merging 1.61 to 1.162

10 years agoSummary: Merging with Visual C after suppressing some warnings for unused variables...
N. Brouard [Tue, 16 Dec 2014 10:52:11 +0000 (10:52 +0000)]
Summary: Merging with Visual C after suppressing some warnings for unused variables. Also fixing Saito's bug 0.98Xn

* imach.c (Module): Merging 1.61 to 1.162

10 years ago* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:30:11 +0000 (10:30 +0000)]
* imach.c (Module): Merging 1.61 to 1.162

10 years agoSummary: prevlim.h
N. Brouard [Tue, 16 Dec 2014 10:13:01 +0000 (10:13 +0000)]
Summary: prevlim.h

10 years agoSummary: temporary backup 0.99!
N. Brouard [Thu, 25 Sep 2014 11:43:39 +0000 (11:43 +0000)]
Summary: temporary backup 0.99!

10 years agoSummary: backuup
N. Brouard [Thu, 25 Sep 2014 11:42:54 +0000 (11:42 +0000)]
Summary: backuup

10 years agoSummary: With some code (wrong) for nlopt
N. Brouard [Tue, 16 Sep 2014 11:06:58 +0000 (11:06 +0000)]
Summary: With some code (wrong) for nlopt

Author:

10 years agoSummary: nlopt trial
N. Brouard [Tue, 16 Sep 2014 11:01:02 +0000 (11:01 +0000)]
Summary: nlopt trial

10 years ago*** empty log message ***
N. Brouard [Mon, 15 Sep 2014 20:57:31 +0000 (20:57 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Mon, 15 Sep 2014 20:42:05 +0000 (20:42 +0000)]
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10 years agoSummary: Problem with macro SQR on Intel compiler
N. Brouard [Mon, 15 Sep 2014 20:41:41 +0000 (20:41 +0000)]
Summary: Problem with macro SQR on Intel compiler