]> henry.ined.fr Git - .git/log
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9 years ago*** empty log message ***
N. Brouard [Mon, 15 Feb 2016 00:48:12 +0000 (00:48 +0000)]
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9 years agoSummary: 0.99 Back projections
N. Brouard [Fri, 12 Feb 2016 11:29:23 +0000 (11:29 +0000)]
Summary: 0.99 Back projections

9 years agoSummary: Experimental backcast
N. Brouard [Wed, 23 Dec 2015 17:18:31 +0000 (17:18 +0000)]
Summary: Experimental backcast

9 years agoSummary: 0.98r4 Warning and status=-2
N. Brouard [Fri, 18 Dec 2015 17:32:11 +0000 (17:32 +0000)]
Summary: 0.98r4 Warning and status=-2

Version 0.98r4 is now:
 - displaying an error when status is -1, date of interview unknown and date of death known;
 - permitting a status -2 when the vital status is unknown at a known date of right truncation.
Older changes concerning s=-2, dating from 2005 have been supersed.

9 years ago*** empty log message ***
N. Brouard [Fri, 18 Dec 2015 17:30:14 +0000 (17:30 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Wed, 16 Dec 2015 09:07:10 +0000 (09:07 +0000)]
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9 years agoSummary: 0.98r4 working
N. Brouard [Wed, 16 Dec 2015 08:52:24 +0000 (08:52 +0000)]
Summary: 0.98r4 working

9 years agoSummary: linuxrpm added
N. Brouard [Wed, 16 Dec 2015 08:52:07 +0000 (08:52 +0000)]
Summary: linuxrpm added

9 years agoSummary: 0.98r4
N. Brouard [Wed, 16 Dec 2015 08:51:13 +0000 (08:51 +0000)]
Summary: 0.98r4

9 years ago*** empty log message ***
N. Brouard [Wed, 16 Dec 2015 06:58:09 +0000 (06:58 +0000)]
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9 years agoSummary: temporary not working
N. Brouard [Wed, 16 Dec 2015 06:57:54 +0000 (06:57 +0000)]
Summary: temporary not working

9 years agoSummary: 0.98r4
N. Brouard [Fri, 11 Dec 2015 18:22:17 +0000 (18:22 +0000)]
Summary: 0.98r4

9 years ago*** empty log message ***
N. Brouard [Tue, 8 Dec 2015 16:09:16 +0000 (16:09 +0000)]
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9 years agoSummary: For 0.98r3
N. Brouard [Tue, 8 Dec 2015 16:02:40 +0000 (16:02 +0000)]
Summary: For 0.98r3

9 years agoSummary: VBoxManage change from execute --image to run --exe and --wait-exit doesn...
N. Brouard [Sat, 21 Nov 2015 15:11:52 +0000 (15:11 +0000)]
Summary: VBoxManage change from execute --image to run --exe and --wait-exit doesn't exist any more

9 years agoSummary: minor typo
N. Brouard [Sat, 21 Nov 2015 12:47:24 +0000 (12:47 +0000)]
Summary: minor typo

9 years agoSummary: 0.98r3 with some graph of projected cross-sectional
N. Brouard [Sat, 21 Nov 2015 12:41:11 +0000 (12:41 +0000)]
Summary: 0.98r3 with some graph of projected cross-sectional

Author: Nicolas Brouard

9 years agoSummary: Start working on projected prevalences
N. Brouard [Wed, 18 Nov 2015 17:41:20 +0000 (17:41 +0000)]
Summary: Start working on projected prevalences

9 years agoSummary: Adding ftolpl parameter
N. Brouard [Tue, 17 Nov 2015 22:12:03 +0000 (22:12 +0000)]
Summary: Adding ftolpl parameter
Author: N Brouard

We had difficulties to get smoothed confidence intervals. It was due
to the period prevalence which wasn't computed accurately. The inner
parameter ftolpl is now an outer parameter of the .imach parameter
file after estepm. If ftolpl is small 1.e-4 and estepm too,
computation are long.

9 years ago*** empty log message ***
N. Brouard [Tue, 17 Nov 2015 14:32:17 +0000 (14:32 +0000)]
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9 years agoSummary: temporary
N. Brouard [Tue, 17 Nov 2015 14:31:57 +0000 (14:31 +0000)]
Summary: temporary

9 years ago*** empty log message ***
N. Brouard [Tue, 27 Oct 2015 19:51:42 +0000 (19:51 +0000)]
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9 years agoSummary: some new subdirs
N. Brouard [Tue, 27 Oct 2015 19:51:28 +0000 (19:51 +0000)]
Summary: some new subdirs

9 years ago*** empty log message ***
N. Brouard [Tue, 27 Oct 2015 17:36:57 +0000 (17:36 +0000)]
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9 years agoSummary: Adding gnuplot 5.1 with bin and etc for pango fonts
N. Brouard [Tue, 27 Oct 2015 17:36:40 +0000 (17:36 +0000)]
Summary: Adding gnuplot 5.1 with bin and etc for pango fonts

9 years agoSummary: 0.98r3 with new gnuplot 5.1
N. Brouard [Tue, 27 Oct 2015 15:59:13 +0000 (15:59 +0000)]
Summary: 0.98r3 with new gnuplot 5.1

9 years ago*** empty log message ***
N. Brouard [Tue, 27 Oct 2015 15:58:38 +0000 (15:58 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Sat, 24 Oct 2015 07:14:11 +0000 (07:14 +0000)]
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9 years agoSummary: 0.98r3 some clarification for graphs on likelihood contributions
N. Brouard [Fri, 23 Oct 2015 15:50:53 +0000 (15:50 +0000)]
Summary: 0.98r3 some clarification for graphs on likelihood contributions

9 years agoSummary: Some new graphs of contribution to likelihood
N. Brouard [Thu, 1 Oct 2015 16:20:26 +0000 (16:20 +0000)]
Summary: Some new graphs of contribution to likelihood

9 years agoSummary: Version read from version.h, itself read with cmake
N. Brouard [Wed, 30 Sep 2015 18:35:53 +0000 (18:35 +0000)]
Summary: Version read from version.h, itself read with cmake

9 years agoSummary: 0.98r2
N. Brouard [Wed, 30 Sep 2015 17:47:08 +0000 (17:47 +0000)]
Summary: 0.98r2

9 years agoSummary: looking at better estimation of the hessian
N. Brouard [Wed, 30 Sep 2015 17:45:14 +0000 (17:45 +0000)]
Summary: looking at better estimation of the hessian

Also a better criteria for convergence to the period prevalence And
therefore adding the number of years needed to converge. (The
prevalence in any alive state shold sum to one

9 years ago*** empty log message ***
N. Brouard [Wed, 30 Sep 2015 17:43:12 +0000 (17:43 +0000)]
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9 years agoSummary: Adding some overall graph on contribution to likelihood. Might change
N. Brouard [Tue, 22 Sep 2015 19:45:16 +0000 (19:45 +0000)]
Summary: Adding some overall graph on contribution to likelihood. Might change

9 years ago*** empty log message ***
N. Brouard [Thu, 17 Sep 2015 07:14:45 +0000 (07:14 +0000)]
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9 years agoSummary: generate refman.pdf
N. Brouard [Thu, 17 Sep 2015 07:14:08 +0000 (07:14 +0000)]
Summary: generate refman.pdf

9 years ago*** empty log message ***
N. Brouard [Thu, 17 Sep 2015 06:22:14 +0000 (06:22 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Wed, 16 Sep 2015 08:50:20 +0000 (08:50 +0000)]
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9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:57:21 +0000 (17:57 +0000)]
Summary: 0.98r0

9 years ago*** empty log message ***
N. Brouard [Tue, 15 Sep 2015 17:56:37 +0000 (17:56 +0000)]
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9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:34:58 +0000 (17:34 +0000)]
Summary: 0.98r0

- Some new graphs like suvival functions
- Some bugs fixed like model=1+age+V2.

9 years agoSummary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:33:54 +0000 (17:33 +0000)]
Summary: 0.98r0

9 years agoSummary: Some tests for setup.iss
N. Brouard [Tue, 15 Sep 2015 17:32:23 +0000 (17:32 +0000)]
Summary: Some tests for setup.iss

9 years ago*** empty log message ***
N. Brouard [Wed, 9 Sep 2015 16:54:10 +0000 (16:54 +0000)]
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9 years agoSummary: Big bug thanks to Flavia
N. Brouard [Wed, 9 Sep 2015 16:53:55 +0000 (16:53 +0000)]
Summary: Big bug thanks to Flavia

Even model=1+age+V2. did not work anymore

9 years agoSummary: 0.98q6 changing default small png format for graph to vectorized svg.
N. Brouard [Mon, 7 Sep 2015 14:09:23 +0000 (14:09 +0000)]
Summary: 0.98q6 changing default small png format for graph to vectorized svg.

9 years ago*** empty log message ***
N. Brouard [Mon, 7 Sep 2015 14:08:13 +0000 (14:08 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Thu, 3 Sep 2015 07:55:21 +0000 (07:55 +0000)]
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9 years agoSummary: 0.98q5 Flavia
N. Brouard [Thu, 3 Sep 2015 07:14:39 +0000 (07:14 +0000)]
Summary: 0.98q5 Flavia

9 years ago*** empty log message ***
N. Brouard [Thu, 3 Sep 2015 07:14:15 +0000 (07:14 +0000)]
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9 years agoSummary: Too old
N. Brouard [Wed, 2 Sep 2015 12:31:29 +0000 (12:31 +0000)]
Summary: Too old

9 years agoSummary: Some updates
N. Brouard [Wed, 2 Sep 2015 12:30:50 +0000 (12:30 +0000)]
Summary: Some updates

9 years agoSummary: Half way to using cmake on OS/X
N. Brouard [Wed, 2 Sep 2015 11:39:21 +0000 (11:39 +0000)]
Summary: Half way to using cmake on OS/X

9 years ago*** empty log message ***
N. Brouard [Wed, 2 Sep 2015 10:21:23 +0000 (10:21 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 1 Sep 2015 18:24:39 +0000 (18:24 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 23:23:08 +0000 (23:23 +0000)]
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9 years agoSummary: 0.98q5
N. Brouard [Tue, 18 Aug 2015 23:17:52 +0000 (23:17 +0000)]
Summary: 0.98q5

9 years agoSummary: cmake
N. Brouard [Tue, 18 Aug 2015 16:44:58 +0000 (16:44 +0000)]
Summary: cmake

9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 16:43:19 +0000 (16:43 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 16:36:50 +0000 (16:36 +0000)]
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9 years agoSummary: Adding a hack for testing purpose
N. Brouard [Tue, 18 Aug 2015 16:28:39 +0000 (16:28 +0000)]
Summary: Adding a hack for testing purpose

After reading the title, ftol and model lines, if the comment line has
a q, starting with #q, the answer at the end of the run is quit. It
permits to run test files in batch with ctest. The former workaround was
$ echo q | imach foo.imach

9 years agoSummary: Adding error when the covariance matrix doesn't contain the exact number...
N. Brouard [Tue, 18 Aug 2015 13:32:00 +0000 (13:32 +0000)]
Summary:  Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.

9 years ago*** empty log message ***
N. Brouard [Tue, 18 Aug 2015 13:31:23 +0000 (13:31 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 4 Aug 2015 07:18:34 +0000 (07:18 +0000)]
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9 years agoSummary: 0.98q4
N. Brouard [Tue, 4 Aug 2015 07:17:42 +0000 (07:17 +0000)]
Summary: 0.98q4

9 years ago0.98q4
N. Brouard [Tue, 4 Aug 2015 07:15:27 +0000 (07:15 +0000)]
0.98q4

9 years agoSummary:
N. Brouard [Mon, 3 Aug 2015 18:53:02 +0000 (18:53 +0000)]
Summary:

9 years agoSummary: Fixing some outputs
N. Brouard [Thu, 16 Jul 2015 16:49:02 +0000 (16:49 +0000)]
Summary: Fixing some outputs

9 years agoSummary: Some fixes
N. Brouard [Tue, 14 Jul 2015 10:00:33 +0000 (10:00 +0000)]
Summary: Some fixes

9 years ago*** empty log message ***
N. Brouard [Tue, 5 May 2015 08:54:59 +0000 (08:54 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Tue, 5 May 2015 08:52:05 +0000 (08:52 +0000)]
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9 years agoSummary: Adding digits in output parameters (7 digits instead of 6)
N. Brouard [Tue, 5 May 2015 08:51:13 +0000 (08:51 +0000)]
Summary: Adding digits in output parameters (7 digits instead of 6)

Fix 1+age+.

9 years agoSummary: 0.98q2
N. Brouard [Thu, 30 Apr 2015 14:45:16 +0000 (14:45 +0000)]
Summary: 0.98q2

9 years ago*** empty log message ***
N. Brouard [Thu, 30 Apr 2015 08:27:53 +0000 (08:27 +0000)]
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9 years ago*** empty log message ***
N. Brouard [Wed, 29 Apr 2015 09:11:15 +0000 (09:11 +0000)]
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9 years agoSummary:
N. Brouard [Wed, 29 Apr 2015 09:11:01 +0000 (09:11 +0000)]
Summary:
Author:

9 years agoSummary: 0.98q1
N. Brouard [Thu, 23 Apr 2015 12:02:12 +0000 (12:02 +0000)]
Summary: 0.98q1

9 years agoSummary: V1*age is working now, version 0.98q1
N. Brouard [Thu, 23 Apr 2015 12:01:52 +0000 (12:01 +0000)]
Summary: V1*age is working now, version 0.98q1

Some codes had been disabled in order to simplify and Vn*age was
working in the optimization phase, ie, giving correct MLE parameters,
but, as usual, outputs were not correct and program core dumped.

10 years agoSummary: O.98p0 and 0.98q0
N. Brouard [Tue, 31 Mar 2015 11:09:43 +0000 (11:09 +0000)]
Summary: O.98p0 and 0.98q0

10 years agoSummary: March 2015
N. Brouard [Wed, 11 Mar 2015 17:15:46 +0000 (17:15 +0000)]
Summary: March 2015

10 years ago*** empty log message ***
N. Brouard [Wed, 11 Mar 2015 13:43:20 +0000 (13:43 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Wed, 11 Mar 2015 13:28:49 +0000 (13:28 +0000)]
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10 years agoSummary: newer including both binaries 32 and 64 bits in a single installer with...
N. Brouard [Wed, 11 Mar 2015 13:28:31 +0000 (13:28 +0000)]
Summary: newer including both binaries 32 and 64 bits in a single installer with InnoSetup 5.5.5

10 years agoSummary: Inclusion of compile and links command line for Intel Compiler
N. Brouard [Wed, 11 Mar 2015 13:26:42 +0000 (13:26 +0000)]
Summary: Inclusion of compile and links command line for Intel Compiler

10 years agoSummary: Back from Windows 8. Intel Compiler
N. Brouard [Wed, 11 Mar 2015 11:52:39 +0000 (11:52 +0000)]
Summary: Back from Windows 8. Intel Compiler

10 years ago*** empty log message ***
N. Brouard [Tue, 10 Mar 2015 20:35:56 +0000 (20:35 +0000)]
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10 years agoSummary: 0.98q0, trying with directest, mnbrak fixed
N. Brouard [Tue, 10 Mar 2015 20:34:32 +0000 (20:34 +0000)]
Summary: 0.98q0, trying with directest, mnbrak fixed

We use directest instead of original Powell test; probably no
incidence on the results, but better justifications;
We fixed Numerical Recipes mnbrak routine which was wrong and gave
wrong results.

10 years agoSummary: Trying to keep directest which seems simpler and more general
N. Brouard [Thu, 12 Feb 2015 08:19:57 +0000 (08:19 +0000)]
Summary: Trying to keep directest which seems simpler and more general
Author: Nicolas Brouard

10 years agoSummary: Comments on Powell added
N. Brouard [Wed, 11 Feb 2015 23:22:24 +0000 (23:22 +0000)]
Summary: Comments on Powell added

Author:

10 years agoSummary: Finishing move from main to function (hpijx and prevalence_limit)
N. Brouard [Wed, 11 Feb 2015 17:33:45 +0000 (17:33 +0000)]
Summary: Finishing move from main to function (hpijx and prevalence_limit)

10 years agoSummary: update
N. Brouard [Wed, 11 Feb 2015 17:31:05 +0000 (17:31 +0000)]
Summary: update

10 years agoSummary: Back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:25 +0000 (09:57 +0000)]
Summary: Back to OS/X

10 years agoSummary: back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:06 +0000 (09:57 +0000)]
Summary: back to OS/X

10 years ago*** empty log message ***
N. Brouard [Sun, 4 Jan 2015 09:35:48 +0000 (09:35 +0000)]
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10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 18:41:06 +0000 (18:41 +0000)]
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10 years agoSummary: Still testing ilc32 on OSX
N. Brouard [Sat, 3 Jan 2015 18:40:56 +0000 (18:40 +0000)]
Summary: Still testing ilc32 on OSX

10 years ago*** empty log message ***
N. Brouard [Sat, 3 Jan 2015 16:45:04 +0000 (16:45 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:33:42 +0000 (16:33 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:16:07 +0000 (16:16 +0000)]
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