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henry.ined.fr Git - .git/log
N. Brouard [Wed, 18 Nov 2015 17:41:20 +0000 (17:41 +0000)]
Summary: Start working on projected prevalences
N. Brouard [Tue, 17 Nov 2015 22:12:03 +0000 (22:12 +0000)]
Summary: Adding ftolpl parameter
Author: N Brouard
We had difficulties to get smoothed confidence intervals. It was due
to the period prevalence which wasn't computed accurately. The inner
parameter ftolpl is now an outer parameter of the .imach parameter
file after estepm. If ftolpl is small 1.e-4 and estepm too,
computation are long.
N. Brouard [Tue, 17 Nov 2015 14:32:17 +0000 (14:32 +0000)]
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N. Brouard [Tue, 17 Nov 2015 14:31:57 +0000 (14:31 +0000)]
Summary: temporary
N. Brouard [Tue, 27 Oct 2015 19:51:42 +0000 (19:51 +0000)]
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N. Brouard [Tue, 27 Oct 2015 19:51:28 +0000 (19:51 +0000)]
Summary: some new subdirs
N. Brouard [Tue, 27 Oct 2015 17:36:57 +0000 (17:36 +0000)]
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N. Brouard [Tue, 27 Oct 2015 17:36:40 +0000 (17:36 +0000)]
Summary: Adding gnuplot 5.1 with bin and etc for pango fonts
N. Brouard [Tue, 27 Oct 2015 15:59:13 +0000 (15:59 +0000)]
Summary: 0.98r3 with new gnuplot 5.1
N. Brouard [Tue, 27 Oct 2015 15:58:38 +0000 (15:58 +0000)]
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N. Brouard [Sat, 24 Oct 2015 07:14:11 +0000 (07:14 +0000)]
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N. Brouard [Fri, 23 Oct 2015 15:50:53 +0000 (15:50 +0000)]
Summary: 0.98r3 some clarification for graphs on likelihood contributions
N. Brouard [Thu, 1 Oct 2015 16:20:26 +0000 (16:20 +0000)]
Summary: Some new graphs of contribution to likelihood
N. Brouard [Wed, 30 Sep 2015 18:35:53 +0000 (18:35 +0000)]
Summary: Version read from version.h, itself read with cmake
N. Brouard [Wed, 30 Sep 2015 17:47:08 +0000 (17:47 +0000)]
Summary: 0.98r2
N. Brouard [Wed, 30 Sep 2015 17:45:14 +0000 (17:45 +0000)]
Summary: looking at better estimation of the hessian
Also a better criteria for convergence to the period prevalence And
therefore adding the number of years needed to converge. (The
prevalence in any alive state shold sum to one
N. Brouard [Wed, 30 Sep 2015 17:43:12 +0000 (17:43 +0000)]
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N. Brouard [Tue, 22 Sep 2015 19:45:16 +0000 (19:45 +0000)]
Summary: Adding some overall graph on contribution to likelihood. Might change
N. Brouard [Thu, 17 Sep 2015 07:14:45 +0000 (07:14 +0000)]
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N. Brouard [Thu, 17 Sep 2015 07:14:08 +0000 (07:14 +0000)]
Summary: generate refman.pdf
N. Brouard [Thu, 17 Sep 2015 06:22:14 +0000 (06:22 +0000)]
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N. Brouard [Wed, 16 Sep 2015 08:50:20 +0000 (08:50 +0000)]
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N. Brouard [Tue, 15 Sep 2015 17:57:21 +0000 (17:57 +0000)]
Summary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:56:37 +0000 (17:56 +0000)]
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N. Brouard [Tue, 15 Sep 2015 17:34:58 +0000 (17:34 +0000)]
Summary: 0.98r0
- Some new graphs like suvival functions
- Some bugs fixed like model=1+age+V2.
N. Brouard [Tue, 15 Sep 2015 17:33:54 +0000 (17:33 +0000)]
Summary: 0.98r0
N. Brouard [Tue, 15 Sep 2015 17:32:23 +0000 (17:32 +0000)]
Summary: Some tests for setup.iss
N. Brouard [Wed, 9 Sep 2015 16:54:10 +0000 (16:54 +0000)]
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N. Brouard [Wed, 9 Sep 2015 16:53:55 +0000 (16:53 +0000)]
Summary: Big bug thanks to Flavia
Even model=1+age+V2. did not work anymore
N. Brouard [Mon, 7 Sep 2015 14:09:23 +0000 (14:09 +0000)]
Summary: 0.98q6 changing default small png format for graph to vectorized svg.
N. Brouard [Mon, 7 Sep 2015 14:08:13 +0000 (14:08 +0000)]
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N. Brouard [Thu, 3 Sep 2015 07:55:21 +0000 (07:55 +0000)]
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N. Brouard [Thu, 3 Sep 2015 07:14:39 +0000 (07:14 +0000)]
Summary: 0.98q5 Flavia
N. Brouard [Thu, 3 Sep 2015 07:14:15 +0000 (07:14 +0000)]
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N. Brouard [Wed, 2 Sep 2015 12:31:29 +0000 (12:31 +0000)]
Summary: Too old
N. Brouard [Wed, 2 Sep 2015 12:30:50 +0000 (12:30 +0000)]
Summary: Some updates
N. Brouard [Wed, 2 Sep 2015 11:39:21 +0000 (11:39 +0000)]
Summary: Half way to using cmake on OS/X
N. Brouard [Wed, 2 Sep 2015 10:21:23 +0000 (10:21 +0000)]
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N. Brouard [Tue, 1 Sep 2015 18:24:39 +0000 (18:24 +0000)]
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N. Brouard [Tue, 18 Aug 2015 23:23:08 +0000 (23:23 +0000)]
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N. Brouard [Tue, 18 Aug 2015 23:17:52 +0000 (23:17 +0000)]
Summary: 0.98q5
N. Brouard [Tue, 18 Aug 2015 16:44:58 +0000 (16:44 +0000)]
Summary: cmake
N. Brouard [Tue, 18 Aug 2015 16:43:19 +0000 (16:43 +0000)]
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N. Brouard [Tue, 18 Aug 2015 16:36:50 +0000 (16:36 +0000)]
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N. Brouard [Tue, 18 Aug 2015 16:28:39 +0000 (16:28 +0000)]
Summary: Adding a hack for testing purpose
After reading the title, ftol and model lines, if the comment line has
a q, starting with #q, the answer at the end of the run is quit. It
permits to run test files in batch with ctest. The former workaround was
$ echo q | imach foo.imach
N. Brouard [Tue, 18 Aug 2015 13:32:00 +0000 (13:32 +0000)]
Summary: Adding error when the covariance matrix doesn't contain the exact number of lines required by the model line.
N. Brouard [Tue, 18 Aug 2015 13:31:23 +0000 (13:31 +0000)]
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N. Brouard [Tue, 4 Aug 2015 07:18:34 +0000 (07:18 +0000)]
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N. Brouard [Tue, 4 Aug 2015 07:17:42 +0000 (07:17 +0000)]
Summary: 0.98q4
N. Brouard [Tue, 4 Aug 2015 07:15:27 +0000 (07:15 +0000)]
0.98q4
N. Brouard [Mon, 3 Aug 2015 18:53:02 +0000 (18:53 +0000)]
Summary:
N. Brouard [Thu, 16 Jul 2015 16:49:02 +0000 (16:49 +0000)]
Summary: Fixing some outputs
N. Brouard [Tue, 14 Jul 2015 10:00:33 +0000 (10:00 +0000)]
Summary: Some fixes
N. Brouard [Tue, 5 May 2015 08:54:59 +0000 (08:54 +0000)]
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N. Brouard [Tue, 5 May 2015 08:52:05 +0000 (08:52 +0000)]
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N. Brouard [Tue, 5 May 2015 08:51:13 +0000 (08:51 +0000)]
Summary: Adding digits in output parameters (7 digits instead of 6)
Fix 1+age+.
N. Brouard [Thu, 30 Apr 2015 14:45:16 +0000 (14:45 +0000)]
Summary: 0.98q2
N. Brouard [Thu, 30 Apr 2015 08:27:53 +0000 (08:27 +0000)]
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N. Brouard [Wed, 29 Apr 2015 09:11:15 +0000 (09:11 +0000)]
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N. Brouard [Wed, 29 Apr 2015 09:11:01 +0000 (09:11 +0000)]
Summary:
Author:
N. Brouard [Thu, 23 Apr 2015 12:02:12 +0000 (12:02 +0000)]
Summary: 0.98q1
N. Brouard [Thu, 23 Apr 2015 12:01:52 +0000 (12:01 +0000)]
Summary: V1*age is working now, version 0.98q1
Some codes had been disabled in order to simplify and Vn*age was
working in the optimization phase, ie, giving correct MLE parameters,
but, as usual, outputs were not correct and program core dumped.
N. Brouard [Tue, 31 Mar 2015 11:09:43 +0000 (11:09 +0000)]
Summary: O.98p0 and 0.98q0
N. Brouard [Wed, 11 Mar 2015 17:15:46 +0000 (17:15 +0000)]
Summary: March 2015
N. Brouard [Wed, 11 Mar 2015 13:43:20 +0000 (13:43 +0000)]
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N. Brouard [Wed, 11 Mar 2015 13:28:49 +0000 (13:28 +0000)]
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N. Brouard [Wed, 11 Mar 2015 13:28:31 +0000 (13:28 +0000)]
Summary: newer including both binaries 32 and 64 bits in a single installer with InnoSetup 5.5.5
N. Brouard [Wed, 11 Mar 2015 13:26:42 +0000 (13:26 +0000)]
Summary: Inclusion of compile and links command line for Intel Compiler
N. Brouard [Wed, 11 Mar 2015 11:52:39 +0000 (11:52 +0000)]
Summary: Back from Windows 8. Intel Compiler
N. Brouard [Tue, 10 Mar 2015 20:35:56 +0000 (20:35 +0000)]
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N. Brouard [Tue, 10 Mar 2015 20:34:32 +0000 (20:34 +0000)]
Summary: 0.98q0, trying with directest, mnbrak fixed
We use directest instead of original Powell test; probably no
incidence on the results, but better justifications;
We fixed Numerical Recipes mnbrak routine which was wrong and gave
wrong results.
N. Brouard [Thu, 12 Feb 2015 08:19:57 +0000 (08:19 +0000)]
Summary: Trying to keep directest which seems simpler and more general
Author: Nicolas Brouard
N. Brouard [Wed, 11 Feb 2015 23:22:24 +0000 (23:22 +0000)]
Summary: Comments on Powell added
Author:
N. Brouard [Wed, 11 Feb 2015 17:33:45 +0000 (17:33 +0000)]
Summary: Finishing move from main to function (hpijx and prevalence_limit)
N. Brouard [Wed, 11 Feb 2015 17:31:05 +0000 (17:31 +0000)]
Summary: update
N. Brouard [Sun, 4 Jan 2015 09:57:25 +0000 (09:57 +0000)]
Summary: Back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:06 +0000 (09:57 +0000)]
Summary: back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:35:48 +0000 (09:35 +0000)]
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N. Brouard [Sat, 3 Jan 2015 18:41:06 +0000 (18:41 +0000)]
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N. Brouard [Sat, 3 Jan 2015 18:40:56 +0000 (18:40 +0000)]
Summary: Still testing ilc32 on OSX
N. Brouard [Sat, 3 Jan 2015 16:45:04 +0000 (16:45 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:33:42 +0000 (16:33 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:16:07 +0000 (16:16 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:15:49 +0000 (16:15 +0000)]
Summary: Still in cross-compilation
N. Brouard [Sat, 3 Jan 2015 12:06:26 +0000 (12:06 +0000)]
Summary: trying to detect cross-compilation
N. Brouard [Sat, 27 Dec 2014 12:07:47 +0000 (12:07 +0000)]
Summary: Back from Visual Studio and Intel, options for compiling for Windows XP
N. Brouard [Tue, 23 Dec 2014 13:26:59 +0000 (13:26 +0000)]
Summary: Back from Visual C
Still problem with utsname.h on Windows
N. Brouard [Tue, 23 Dec 2014 11:17:26 +0000 (11:17 +0000)]
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N. Brouard [Tue, 23 Dec 2014 11:17:12 +0000 (11:17 +0000)]
Summary: Cleaning some \%% back to %%
The escape was mandatory for a specific compiler (which one?), but too many warnings.
N. Brouard [Mon, 22 Dec 2014 23:08:31 +0000 (23:08 +0000)]
Summary: 0.98p
Outputs some informations on compiler used, OS etc. Testing on different platforms.
N. Brouard [Mon, 22 Dec 2014 23:06:35 +0000 (23:06 +0000)]
Summary: Trying to integrate Intel OSX compiler
N. Brouard [Mon, 22 Dec 2014 15:17:42 +0000 (15:17 +0000)]
Summary: udate
N. Brouard [Mon, 22 Dec 2014 13:50:56 +0000 (13:50 +0000)]
Summary: Testing uname and compiler version and if compiled 32 or 64
Testing on Linux 64
N. Brouard [Mon, 22 Dec 2014 11:40:47 +0000 (11:40 +0000)]
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N. Brouard [Tue, 16 Dec 2014 11:20:36 +0000 (11:20 +0000)]
Summary: After compiling on Visual C
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:52:11 +0000 (10:52 +0000)]
Summary: Merging with Visual C after suppressing some warnings for unused variables. Also fixing Saito's bug 0.98Xn
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:30:11 +0000 (10:30 +0000)]
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:13:01 +0000 (10:13 +0000)]
Summary: prevlim.h
N. Brouard [Thu, 25 Sep 2014 11:43:39 +0000 (11:43 +0000)]
Summary: temporary backup 0.99!
N. Brouard [Thu, 25 Sep 2014 11:42:54 +0000 (11:42 +0000)]
Summary: backuup