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henry.ined.fr Git - .git/log
N. Brouard [Wed, 11 Feb 2015 23:22:24 +0000 (23:22 +0000)]
Summary: Comments on Powell added
Author:
N. Brouard [Wed, 11 Feb 2015 17:33:45 +0000 (17:33 +0000)]
Summary: Finishing move from main to function (hpijx and prevalence_limit)
N. Brouard [Wed, 11 Feb 2015 17:31:05 +0000 (17:31 +0000)]
Summary: update
N. Brouard [Sun, 4 Jan 2015 09:57:25 +0000 (09:57 +0000)]
Summary: Back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:57:06 +0000 (09:57 +0000)]
Summary: back to OS/X
N. Brouard [Sun, 4 Jan 2015 09:35:48 +0000 (09:35 +0000)]
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N. Brouard [Sat, 3 Jan 2015 18:41:06 +0000 (18:41 +0000)]
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N. Brouard [Sat, 3 Jan 2015 18:40:56 +0000 (18:40 +0000)]
Summary: Still testing ilc32 on OSX
N. Brouard [Sat, 3 Jan 2015 16:45:04 +0000 (16:45 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:33:42 +0000 (16:33 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:16:07 +0000 (16:16 +0000)]
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N. Brouard [Sat, 3 Jan 2015 16:15:49 +0000 (16:15 +0000)]
Summary: Still in cross-compilation
N. Brouard [Sat, 3 Jan 2015 12:06:26 +0000 (12:06 +0000)]
Summary: trying to detect cross-compilation
N. Brouard [Sat, 27 Dec 2014 12:07:47 +0000 (12:07 +0000)]
Summary: Back from Visual Studio and Intel, options for compiling for Windows XP
N. Brouard [Tue, 23 Dec 2014 13:26:59 +0000 (13:26 +0000)]
Summary: Back from Visual C
Still problem with utsname.h on Windows
N. Brouard [Tue, 23 Dec 2014 11:17:26 +0000 (11:17 +0000)]
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N. Brouard [Tue, 23 Dec 2014 11:17:12 +0000 (11:17 +0000)]
Summary: Cleaning some \%% back to %%
The escape was mandatory for a specific compiler (which one?), but too many warnings.
N. Brouard [Mon, 22 Dec 2014 23:08:31 +0000 (23:08 +0000)]
Summary: 0.98p
Outputs some informations on compiler used, OS etc. Testing on different platforms.
N. Brouard [Mon, 22 Dec 2014 23:06:35 +0000 (23:06 +0000)]
Summary: Trying to integrate Intel OSX compiler
N. Brouard [Mon, 22 Dec 2014 15:17:42 +0000 (15:17 +0000)]
Summary: udate
N. Brouard [Mon, 22 Dec 2014 13:50:56 +0000 (13:50 +0000)]
Summary: Testing uname and compiler version and if compiled 32 or 64
Testing on Linux 64
N. Brouard [Mon, 22 Dec 2014 11:40:47 +0000 (11:40 +0000)]
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N. Brouard [Tue, 16 Dec 2014 11:20:36 +0000 (11:20 +0000)]
Summary: After compiling on Visual C
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:52:11 +0000 (10:52 +0000)]
Summary: Merging with Visual C after suppressing some warnings for unused variables. Also fixing Saito's bug 0.98Xn
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:30:11 +0000 (10:30 +0000)]
* imach.c (Module): Merging 1.61 to 1.162
N. Brouard [Tue, 16 Dec 2014 10:13:01 +0000 (10:13 +0000)]
Summary: prevlim.h
N. Brouard [Thu, 25 Sep 2014 11:43:39 +0000 (11:43 +0000)]
Summary: temporary backup 0.99!
N. Brouard [Thu, 25 Sep 2014 11:42:54 +0000 (11:42 +0000)]
Summary: backuup
N. Brouard [Tue, 16 Sep 2014 11:06:58 +0000 (11:06 +0000)]
Summary: With some code (wrong) for nlopt
Author:
N. Brouard [Tue, 16 Sep 2014 11:01:02 +0000 (11:01 +0000)]
Summary: nlopt trial
N. Brouard [Mon, 15 Sep 2014 20:57:31 +0000 (20:57 +0000)]
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N. Brouard [Mon, 15 Sep 2014 20:42:05 +0000 (20:42 +0000)]
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N. Brouard [Mon, 15 Sep 2014 20:41:41 +0000 (20:41 +0000)]
Summary: Problem with macro SQR on Intel compiler
N. Brouard [Tue, 2 Sep 2014 11:19:57 +0000 (11:19 +0000)]
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N. Brouard [Tue, 2 Sep 2014 11:19:38 +0000 (11:19 +0000)]
* prevlim.h (Module):
N. Brouard [Tue, 2 Sep 2014 09:24:48 +0000 (09:24 +0000)]
Summary:Adding test with ming-64 for Windows
Author: Brouard
N. Brouard [Tue, 2 Sep 2014 09:24:05 +0000 (09:24 +0000)]
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N. Brouard [Mon, 1 Sep 2014 18:07:27 +0000 (18:07 +0000)]
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N. Brouard [Mon, 1 Sep 2014 17:51:01 +0000 (17:51 +0000)]
Summary: /MT instead of /MD in order to avoid the missing MSVCR100.dll
Author: Brouard
compiled on Windows with cl /MT /O2
N. Brouard [Mon, 1 Sep 2014 10:34:10 +0000 (10:34 +0000)]
Summary: WIN32
Author: Brouard
N. Brouard [Fri, 29 Aug 2014 09:50:30 +0000 (09:50 +0000)]
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N. Brouard [Fri, 29 Aug 2014 09:04:49 +0000 (09:04 +0000)]
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N. Brouard [Fri, 29 Aug 2014 08:50:53 +0000 (08:50 +0000)]
Summary: 0.98nX compiled now with visual studio 2010
Author: Brouard
N. Brouard [Fri, 29 Aug 2014 05:58:08 +0000 (05:58 +0000)]
Summary: Some provisional steps for a rpm build
Author: Brouard
N. Brouard [Thu, 28 Aug 2014 13:05:37 +0000 (13:05 +0000)]
Summary: New version 0.98nX
Author: Nicolas Brouard
N. Brouard [Thu, 28 Aug 2014 07:52:45 +0000 (07:52 +0000)]
Author: brouard
N. Brouard [Wed, 27 Aug 2014 19:06:49 +0000 (19:06 +0000)]
Summary: Integration Linux crosscompilation from OS/X
Author: brouard
N. Brouard [Wed, 27 Aug 2014 17:11:51 +0000 (17:11 +0000)]
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N. Brouard [Wed, 27 Aug 2014 16:26:55 +0000 (16:26 +0000)]
Summary: Preparing windows Visual studio version
Author: Brouard
In order to compile on Visual studio, time.h is now correct and time_t
and tm struct should be used. difftime should be used but sometimes I
just make the differences in raw time format (time(&now).
Trying to suppress #ifdef LINUX
Add xdg-open for __linux in order to open default browser.
N. Brouard [Wed, 27 Aug 2014 16:23:13 +0000 (16:23 +0000)]
Summary: 0.98nX
Author: brouard
N. Brouard [Mon, 25 Aug 2014 21:00:47 +0000 (21:00 +0000)]
Summary: Trying gcc-4.8.0-mingw32
Author: Brouard
N. Brouard [Mon, 25 Aug 2014 20:10:10 +0000 (20:10 +0000)]
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N. Brouard [Mon, 25 Aug 2014 18:32:34 +0000 (18:32 +0000)]
Summary: New compile, minor changes
Author: Brouard
N. Brouard [Fri, 20 Jun 2014 17:32:08 +0000 (17:32 +0000)]
Summary: Outputs now all graphs of convergence to period prevalence
N. Brouard [Fri, 20 Jun 2014 16:45:46 +0000 (16:45 +0000)]
Summary: If 3 live state, convergence to period prevalence on same graph
Author: Brouard
N. Brouard [Wed, 18 Jun 2014 17:54:58 +0000 (17:54 +0000)]
Summary: create dmg improved with gnuplot osx binary
Author: brouard
N. Brouard [Wed, 18 Jun 2014 17:54:09 +0000 (17:54 +0000)]
Summary: open browser, use gnuplot on same dir than imach if not found in the path
N. Brouard [Wed, 18 Jun 2014 16:43:30 +0000 (16:43 +0000)]
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N. Brouard [Wed, 18 Jun 2014 16:42:35 +0000 (16:42 +0000)]
Summary: If gnuplot is not in the path try on same directory than imach binary (OSX)
Author: brouard
N. Brouard [Wed, 18 Jun 2014 15:51:14 +0000 (15:51 +0000)]
Summary: Some fixes in parameter files errors
Author: Nicolas Brouard
N. Brouard [Tue, 17 Jun 2014 17:38:48 +0000 (17:38 +0000)]
Summary: Nothing new
Author: Brouard
Just a new packaging for OS/X version 0.98nS
N. Brouard [Tue, 17 Jun 2014 17:37:48 +0000 (17:37 +0000)]
Summary: Brouard
With an other createdmg for OS/X
N. Brouard [Mon, 16 Jun 2014 10:33:11 +0000 (10:33 +0000)]
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N. Brouard [Mon, 16 Jun 2014 10:20:28 +0000 (10:20 +0000)]
Summary: Merge
Author: Brouard
Merge, before building revised version.
N. Brouard [Tue, 10 Jun 2014 21:25:04 +0000 (21:25 +0000)]
Author: Nicolas Brouard
N. Brouard [Tue, 10 Jun 2014 21:24:21 +0000 (21:24 +0000)]
Summary: Valgrind added with test file
Author: Nicolas Brouard
Valgrind works on OS/X too.
N. Brouard [Tue, 10 Jun 2014 21:23:15 +0000 (21:23 +0000)]
Summary: Debugging with valgrind
Author: Nicolas Brouard
Lot of changes in order to output the results with some covariates
After the Edimburgh REVES conference 2014, it seems mandatory to
improve the code.
No more memory valgrind error but a lot has to be done in order to
continue the work of splitting the code into subroutines.
Also, decodemodel has been improved. Tricode is still not
optimal. nbcode should be improved. Documentation has been added in
the source code.
N. Brouard [Mon, 10 Feb 2014 22:24:12 +0000 (22:24 +0000)]
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N. Brouard [Mon, 10 Feb 2014 22:17:31 +0000 (22:17 +0000)]
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N. Brouard [Mon, 10 Feb 2014 21:31:16 +0000 (21:31 +0000)]
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N. Brouard [Sun, 26 Jan 2014 09:45:38 +0000 (09:45 +0000)]
Summary: Version 0.98nR (to be improved, but gives same optimization results as 0.98k. Nice, promising
* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
(Module): Version 0.98nR Running ok, but output format still only works for three covariates.
N. Brouard [Sun, 26 Jan 2014 03:57:36 +0000 (03:57 +0000)]
Summary: gnuplot changed plot w l 1 has to be changed to plot w l lt 2
* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
N. Brouard [Sun, 26 Jan 2014 02:42:01 +0000 (02:42 +0000)]
* imach.c (Module): Trying to merge old staffs together while being at Tokyo. Not tested...
N. Brouard [Fri, 2 Sep 2011 10:37:54 +0000 (10:37 +0000)]
Summary: times.h is ok with mingw32 now.
N. Brouard [Fri, 2 Sep 2011 10:28:58 +0000 (10:28 +0000)]
Summary: Merging
N. Brouard [Mon, 14 Jun 2010 07:50:17 +0000 (07:50 +0000)]
After the theft of my laptop, I probably lost some lines of codes which were not uploaded to the CVS tree.
I remember having already fixed agemin agemax which are pointers now but not cvs saved.
N. Brouard [Fri, 30 Apr 2010 18:19:40 +0000 (18:19 +0000)]
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N. Brouard [Fri, 30 Apr 2010 18:19:29 +0000 (18:19 +0000)]
Some comments added in order to remember what is done.
N. Brouard [Fri, 30 Apr 2010 09:00:45 +0000 (09:00 +0000)]
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N. Brouard [Thu, 29 Apr 2010 18:11:38 +0000 (18:11 +0000)]
(Module): Checking covariates for more complex models
than V1+V2. A lot of change to be done. Unstable.
N. Brouard [Mon, 26 Apr 2010 20:30:53 +0000 (20:30 +0000)]
(Module): merging some libgsl code. Fixing computation
of likelione (using inter/intrapolation if mle = 0) in order to
get same likelihood as if mle=1.
Some cleaning of code and comments added.
N. Brouard [Thu, 29 Oct 2009 15:33:14 +0000 (15:33 +0000)]
(Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
N. Brouard [Thu, 29 Oct 2009 13:20:46 +0000 (13:20 +0000)]
0.98l
N. Brouard [Thu, 29 Oct 2009 13:19:55 +0000 (13:19 +0000)]
Changes for compiling on Windows with Mingw and not only cygwin.
N. Brouard [Thu, 29 Oct 2009 13:18:53 +0000 (13:18 +0000)]
(Module): Now imach stops if date of birth, at least year of birth, is not given. Some cleaning of the code.
N. Brouard [Thu, 29 Oct 2009 13:18:35 +0000 (13:18 +0000)]
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N. Brouard [Mon, 6 Jul 2009 13:09:23 +0000 (13:09 +0000)]
O.98k
N. Brouard [Mon, 6 Jul 2009 13:09:03 +0000 (13:09 +0000)]
Compiling for Windows on Linux
N. Brouard [Mon, 6 Jul 2009 10:22:06 +0000 (10:22 +0000)]
Imach for OS/X version 0.98k
N. Brouard [Mon, 6 Jul 2009 10:21:25 +0000 (10:21 +0000)]
just nforces
N. Brouard [Mon, 6 Jul 2009 08:22:05 +0000 (08:22 +0000)]
Many tings
N. Brouard [Mon, 6 Jul 2009 08:14:17 +0000 (08:14 +0000)]
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N. Brouard [Sat, 20 Jun 2009 16:22:47 +0000 (16:22 +0000)]
Some dimensions resccaled
N. Brouard [Tue, 26 May 2009 06:44:34 +0000 (06:44 +0000)]
(Module): Max Covariate is now set to 20 instead of 8. A
lot of cleaning with variables initialized to 0. Trying to make
V2+V3*age+V1+V4 strb=V3*age+V1+V4 working better.
Agnès Lièvre [Fri, 31 Aug 2007 13:49:27 +0000 (13:49 +0000)]
Modification of the way of exiting when the covariate is not binary in order to see on the window the error message before exiting
N. Brouard [Fri, 30 Jun 2006 15:34:16 +0000 (15:34 +0000)]
0.98i version
N. Brouard [Fri, 30 Jun 2006 13:02:05 +0000 (13:02 +0000)]
(Module): Clarifications on computing e.j
N. Brouard [Fri, 28 Apr 2006 18:11:50 +0000 (18:11 +0000)]
(Module): Yes the sum of survivors was wrong since
imach-114 because nhstepm was no more computed in the age
loop. Now we define nhstepma in the age loop.
(Module): In order to speed up (in case of numerous covariates) we
compute health expectancies (without variances) in a first step
and then all the health expectancies with variances or standard
deviation (needs data from the Hessian matrices) which slows the
computation.
In the future we should be able to stop the program is only health
expectancies and graph are needed without standard deviations.
N. Brouard [Fri, 28 Apr 2006 17:25:08 +0000 (17:25 +0000)]
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N. Brouard [Fri, 28 Apr 2006 17:25:01 +0000 (17:25 +0000)]
Version 0.98h